One-to-n alignments

Command: compare-matrices  -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2021/02/16/peak-motifs.2021-02-16.145820_2021-02-16.145820_jZbPOq/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2021/02/16/peak-motifs.2021-02-16.145820_2021-02-16.145820_jZbPOq/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab

One-to-n matrix alignment; reference matrix: oligos_6nt_test_vs_ctrl_m2_shift4 ; 5 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_test_vs_ctrl_m2_shift4 (oligos_6nt_test_vs_ctrl_m2)
; oligos_6nt_test_vs_ctrl_m2; m=0 (reference); ncol1=13; shift=4; ncol=18; ----rhcCTGATAAGra- ; Alignment reference a 0 0 0 0 234 220 197 51 127 21 774 31 806 789 60 229 260 0 c 0 0 0 0 204 239 336 704 34 14 43 33 14 17 51 204 201 0 g 0 0 0 0 222 182 175 67 31 826 27 51 29 41 722 253 219 0 t 0 0 0 0 217 236 169 55 685 16 33 762 28 30 44 191 197 0

oligos_6nt_test_vs_ctrl_m2_shift4 (oligos_6nt_test_vs_ctrl_m2)
; oligos_6nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m2; m=1/4; ncol2=13; w=13; offset=0; strand=D; shift=4; score= 1; ----rhcCTGATAAGra- ; cor=; Ncor= a 0 0 0 0 234 220 197 51 127 21 774 31 806 789 60 229 260 0 c 0 0 0 0 204 239 336 704 34 14 43 33 14 17 51 204 201 0 g 0 0 0 0 222 182 175 67 31 826 27 51 29 41 722 253 219 0 t 0 0 0 0 217 236 169 55 685 16 33 762 28 30 44 191 197 0

oligos_7nt_test_vs_ctrl_m2_rc_shift4 (oligos_7nt_test_vs_ctrl_m2_rc)
; oligos_6nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m2_rc; m=2/4; ncol2=14; w=13; offset=0; strand=R; shift=4; score=0.864272; ----dcaCTGATAAGGaa ; cor=; Ncor= a 0 0 0 0 182 157 421 56 108 30 570 29 582 587 59 54 202 179 c 0 0 0 0 108 179 85 497 22 18 25 34 21 13 21 44 161 161 g 0 0 0 0 176 158 80 63 21 577 25 52 21 28 524 500 152 162 t 0 0 0 0 184 156 64 34 499 25 30 535 26 22 46 52 135 148

oligos_6nt_test_vs_ctrl_m1_rc_shift2 (oligos_6nt_test_vs_ctrl_m1_rc)
; oligos_6nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m1_rc; m=3/4; ncol2=15; w=13; offset=-2; strand=R; shift=2; score=0.637664; --rgtcaGAGATAAGra- ; cor=; Ncor= a 0 0 252 210 198 163 576 83 831 41 873 55 856 852 76 306 311 0 c 0 0 214 219 143 443 101 131 38 23 34 41 29 26 52 203 221 0 g 0 0 255 292 200 209 120 656 30 868 31 56 40 44 781 268 236 0 t 0 0 237 237 417 143 161 88 59 26 20 806 33 36 49 181 190 0

oligos_7nt_test_vs_ctrl_m4_shift0 (oligos_7nt_test_vs_ctrl_m4)
; oligos_6nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m4; m=4/4; ncol2=18; w=13; offset=-4; strand=D; shift=0; score=0.563332; rragggacAGATAAGGma ; cor=; Ncor= a 142 142 250 80 103 78 320 55 458 19 478 43 451 455 39 65 173 157 c 119 117 85 52 48 93 77 318 14 21 17 24 21 16 23 39 132 116 g 141 146 107 314 281 276 65 100 15 460 15 51 30 25 428 384 105 127 t 119 116 79 75 89 74 59 48 34 21 11 403 19 25 31 33 111 121

One-to-n matrix alignment; reference matrix: oligos_7nt_test_vs_ctrl_m3_shift0 ; 3 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_test_vs_ctrl_m3_shift0 (oligos_7nt_test_vs_ctrl_m3)
; oligos_7nt_test_vs_ctrl_m3; m=0 (reference); ncol1=15; shift=0; ncol=17; ghaaCTGTCACCAsr-- ; Alignment reference a 134 157 343 330 45 43 21 37 21 477 24 38 429 138 166 0 0 c 129 160 78 65 467 31 21 21 492 29 473 473 43 150 142 0 0 g 166 111 80 88 30 18 507 13 31 21 35 25 42 177 154 0 0 t 142 143 70 88 29 479 22 500 27 44 39 35 57 106 109 0 0

oligos_7nt_test_vs_ctrl_m3_shift0 (oligos_7nt_test_vs_ctrl_m3)
; oligos_7nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m3; m=1/2; ncol2=15; w=15; offset=0; strand=D; shift=0; score= 1; ghaaCTGTCACCAsr-- ; cor=; Ncor= a 134 157 343 330 45 43 21 37 21 477 24 38 429 138 166 0 0 c 129 160 78 65 467 31 21 21 492 29 473 473 43 150 142 0 0 g 166 111 80 88 30 18 507 13 31 21 35 25 42 177 154 0 0 t 142 143 70 88 29 479 22 500 27 44 39 35 57 106 109 0 0

oligos_6nt_test_vs_ctrl_m3_rc_shift1 (oligos_6nt_test_vs_ctrl_m3_rc)
; oligos_7nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m3_rc; m=2/2; ncol2=16; w=14; offset=1; strand=R; shift=1; score=0.697033; -hsaCTGTCACCCAgmc ; cor=; Ncor= a 0 124 107 318 37 37 20 30 21 394 19 49 58 337 69 130 115 c 0 120 137 59 383 33 23 28 400 25 418 376 335 56 117 124 137 g 0 107 120 46 35 14 420 20 37 21 20 20 45 42 239 117 110 t 0 128 115 56 24 395 16 401 21 39 22 34 41 44 54 108 117

One-to-n matrix alignment; reference matrix: oligos_6nt_test_vs_ctrl_m3_shift0 ; 4 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_test_vs_ctrl_m3_shift0 (oligos_6nt_test_vs_ctrl_m3)
; oligos_6nt_test_vs_ctrl_m3; m=0 (reference); ncol1=16; shift=0; ncol=21; gkcTGGGTGACAGtsd----- ; Alignment reference a 117 108 54 44 41 34 22 39 21 401 16 395 24 56 115 128 0 0 0 0 0 c 110 117 239 42 45 20 20 21 37 20 420 14 35 46 120 107 0 0 0 0 0 g 137 124 117 56 335 376 418 25 400 28 23 33 383 59 137 120 0 0 0 0 0 t 115 130 69 337 58 49 19 394 21 30 20 37 37 318 107 124 0 0 0 0 0

oligos_6nt_test_vs_ctrl_m3_shift0 (oligos_6nt_test_vs_ctrl_m3)
; oligos_6nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m3; m=1/3; ncol2=16; w=16; offset=0; strand=D; shift=0; score= 1; gkcTGGGTGACAGtsd----- ; cor=; Ncor= a 117 108 54 44 41 34 22 39 21 401 16 395 24 56 115 128 0 0 0 0 0 c 110 117 239 42 45 20 20 21 37 20 420 14 35 46 120 107 0 0 0 0 0 g 137 124 117 56 335 376 418 25 400 28 23 33 383 59 137 120 0 0 0 0 0 t 115 130 69 337 58 49 19 394 21 30 20 37 37 318 107 124 0 0 0 0 0

oligos_7nt_test_vs_ctrl_m3_rc_shift2 (oligos_7nt_test_vs_ctrl_m3_rc)
; oligos_6nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m3_rc; m=2/3; ncol2=15; w=14; offset=2; strand=R; shift=2; score=0.697033; --ysTGGTGACAGttdc---- ; cor=; Ncor= a 0 0 109 106 57 35 39 44 27 500 22 479 29 88 70 143 142 0 0 0 0 c 0 0 154 177 42 25 35 21 31 13 507 18 30 88 80 111 166 0 0 0 0 g 0 0 142 150 43 473 473 29 492 21 21 31 467 65 78 160 129 0 0 0 0 t 0 0 166 138 429 38 24 477 21 37 21 43 45 330 343 157 134 0 0 0 0

oligos_6nt_test_vs_ctrl_m5_rc_shift0 (oligos_6nt_test_vs_ctrl_m5_rc)
; oligos_6nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m5_rc; m=3/3; ncol2=21; w=16; offset=0; strand=R; shift=0; score=0.639023; gmctgGGTGACAGGAcAGtsy ; cor=; Ncor= a 29 32 12 26 21 10 7 18 8 89 2 99 3 6 89 17 93 4 20 26 26 c 28 35 67 9 10 6 13 3 11 9 103 5 5 17 5 78 7 17 4 30 30 g 38 28 28 12 77 91 94 11 90 9 11 7 102 89 14 15 9 91 21 34 29 t 24 24 12 72 11 12 5 87 10 12 3 8 9 7 11 9 10 7 74 29 34

One-to-n matrix alignment; reference matrix: oligos_6nt_test_vs_ctrl_m5_shift0 ; 3 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_test_vs_ctrl_m5_shift0 (oligos_6nt_test_vs_ctrl_m5)
; oligos_6nt_test_vs_ctrl_m5; m=0 (reference); ncol1=21; shift=0; ncol=21; rsaCTgTCCTGTCACCcagkc ; Alignment reference a 34 29 74 7 10 9 11 7 9 8 3 12 10 87 5 12 11 72 12 24 24 c 29 34 21 91 9 15 14 89 102 7 11 9 90 11 94 91 77 12 28 28 38 g 30 30 4 17 7 78 5 17 5 5 103 9 11 3 13 6 10 9 67 35 28 t 26 26 20 4 93 17 89 6 3 99 2 89 8 18 7 10 21 26 12 32 29

oligos_6nt_test_vs_ctrl_m5_shift0 (oligos_6nt_test_vs_ctrl_m5)
; oligos_6nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m5; m=1/2; ncol2=21; w=21; offset=0; strand=D; shift=0; score= 1; rsaCTgTCCTGTCACCcagkc ; cor=; Ncor= a 34 29 74 7 10 9 11 7 9 8 3 12 10 87 5 12 11 72 12 24 24 c 29 34 21 91 9 15 14 89 102 7 11 9 90 11 94 91 77 12 28 28 38 g 30 30 4 17 7 78 5 17 5 5 103 9 11 3 13 6 10 9 67 35 28 t 26 26 20 4 93 17 89 6 3 99 2 89 8 18 7 10 21 26 12 32 29

oligos_6nt_test_vs_ctrl_m3_rc_shift5 (oligos_6nt_test_vs_ctrl_m3_rc)
; oligos_6nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m3_rc; m=2/2; ncol2=16; w=16; offset=5; strand=R; shift=5; score=0.639023; -----hsaCTGTCACCCAgmc ; cor=; Ncor= a 0 0 0 0 0 124 107 318 37 37 20 30 21 394 19 49 58 337 69 130 115 c 0 0 0 0 0 120 137 59 383 33 23 28 400 25 418 376 335 56 117 124 137 g 0 0 0 0 0 107 120 46 35 14 420 20 37 21 20 20 45 42 239 117 110 t 0 0 0 0 0 128 115 56 24 395 16 401 21 39 22 34 41 44 54 108 117

One-to-n matrix alignment; reference matrix: oligos_7nt_test_vs_ctrl_m1_shift4 ; 7 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_test_vs_ctrl_m1_shift4 (oligos_7nt_test_vs_ctrl_m1)
; oligos_7nt_test_vs_ctrl_m1; m=0 (reference); ncol1=14; shift=4; ncol=18; ----rsAGAGATAAGGma ; Alignment reference a 0 0 0 0 240 191 581 83 704 35 735 51 697 704 80 101 245 238 c 0 0 0 0 153 226 45 102 27 22 32 38 31 29 44 66 204 191 g 0 0 0 0 221 226 107 570 34 728 23 59 44 48 639 594 196 189 t 0 0 0 0 194 165 75 53 43 23 18 660 36 27 45 47 163 190

oligos_7nt_test_vs_ctrl_m1_shift4 (oligos_7nt_test_vs_ctrl_m1)
; oligos_7nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m1; m=1/6; ncol2=14; w=14; offset=0; strand=D; shift=4; score= 1; ----rsAGAGATAAGGma ; cor=; Ncor= a 0 0 0 0 240 191 581 83 704 35 735 51 697 704 80 101 245 238 c 0 0 0 0 153 226 45 102 27 22 32 38 31 29 44 66 204 191 g 0 0 0 0 221 226 107 570 34 728 23 59 44 48 639 594 196 189 t 0 0 0 0 194 165 75 53 43 23 18 660 36 27 45 47 163 190

oligos_7nt_test_vs_ctrl_m5_shift4 (oligos_7nt_test_vs_ctrl_m5)
; oligos_7nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m5; m=2/6; ncol2=14; w=14; offset=0; strand=D; shift=4; score=0.921524; ----rsAGAGATAAGArw ; cor=; Ncor= a 0 0 0 0 285 234 731 100 892 58 877 81 833 852 77 670 314 303 c 0 0 0 0 190 307 48 127 21 26 37 50 32 24 68 94 202 205 g 0 0 0 0 263 249 101 667 24 844 27 73 55 60 776 137 247 213 t 0 0 0 0 234 182 92 78 35 44 31 768 52 36 51 71 209 251

oligos_7nt_test_vs_ctrl_m2_rc_shift4 (oligos_7nt_test_vs_ctrl_m2_rc)
; oligos_7nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m2_rc; m=3/6; ncol2=14; w=14; offset=0; strand=R; shift=4; score=0.793008; ----dcaCTGATAAGGaa ; cor=; Ncor= a 0 0 0 0 182 157 421 56 108 30 570 29 582 587 59 54 202 179 c 0 0 0 0 108 179 85 497 22 18 25 34 21 13 21 44 161 161 g 0 0 0 0 176 158 80 63 21 577 25 52 21 28 524 500 152 162 t 0 0 0 0 184 156 64 34 499 25 30 535 26 22 46 52 135 148

oligos_6nt_test_vs_ctrl_m1_rc_shift2 (oligos_6nt_test_vs_ctrl_m1_rc)
; oligos_7nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m1_rc; m=4/6; ncol2=15; w=13; offset=-2; strand=R; shift=2; score=0.774531; --rgtcaGAGATAAGra- ; cor=; Ncor= a 0 0 252 210 198 163 576 83 831 41 873 55 856 852 76 306 311 0 c 0 0 214 219 143 443 101 131 38 23 34 41 29 26 52 203 221 0 g 0 0 255 292 200 209 120 656 30 868 31 56 40 44 781 268 236 0 t 0 0 237 237 417 143 161 88 59 26 20 806 33 36 49 181 190 0

oligos_7nt_test_vs_ctrl_m4_shift0 (oligos_7nt_test_vs_ctrl_m4)
; oligos_7nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m4; m=5/6; ncol2=18; w=14; offset=-4; strand=D; shift=0; score=0.715302; rragggacAGATAAGGma ; cor=; Ncor= a 142 142 250 80 103 78 320 55 458 19 478 43 451 455 39 65 173 157 c 119 117 85 52 48 93 77 318 14 21 17 24 21 16 23 39 132 116 g 141 146 107 314 281 276 65 100 15 460 15 51 30 25 428 384 105 127 t 119 116 79 75 89 74 59 48 34 21 11 403 19 25 31 33 111 121

oligos_6nt_test_vs_ctrl_m4_shift2 (oligos_6nt_test_vs_ctrl_m4)
; oligos_7nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m4; m=6/6; ncol2=15; w=13; offset=-2; strand=D; shift=2; score=0.653963; --kstcAGAGATAGGrr- ; cor=; Ncor= a 0 0 164 142 111 91 514 36 644 37 642 46 647 94 68 241 222 0 c 0 0 158 200 86 453 48 49 23 28 29 67 15 29 70 153 153 0 g 0 0 205 207 109 103 64 608 24 631 30 63 39 555 536 202 199 0 t 0 0 198 176 419 78 99 32 34 29 24 549 24 47 51 129 151 0

One-to-n matrix alignment; reference matrix: oligos_7nt_test_vs_ctrl_m2_shift0 ; 6 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_test_vs_ctrl_m2_shift0 (oligos_7nt_test_vs_ctrl_m2)
; oligos_7nt_test_vs_ctrl_m2; m=0 (reference); ncol1=14; shift=0; ncol=18; ttCCTTATCAGtgh---- ; Alignment reference a 148 135 52 46 22 26 535 30 25 499 34 64 156 184 0 0 0 0 c 162 152 500 524 28 21 52 25 577 21 63 80 158 176 0 0 0 0 g 161 161 44 21 13 21 34 25 18 22 497 85 179 108 0 0 0 0 t 179 202 54 59 587 582 29 570 30 108 56 421 157 182 0 0 0 0

oligos_7nt_test_vs_ctrl_m2_shift0 (oligos_7nt_test_vs_ctrl_m2)
; oligos_7nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m2; m=1/5; ncol2=14; w=14; offset=0; strand=D; shift=0; score= 1; ttCCTTATCAGtgh---- ; cor=; Ncor= a 148 135 52 46 22 26 535 30 25 499 34 64 156 184 0 0 0 0 c 162 152 500 524 28 21 52 25 577 21 63 80 158 176 0 0 0 0 g 161 161 44 21 13 21 34 25 18 22 497 85 179 108 0 0 0 0 t 179 202 54 59 587 582 29 570 30 108 56 421 157 182 0 0 0 0

oligos_6nt_test_vs_ctrl_m2_rc_shift1 (oligos_6nt_test_vs_ctrl_m2_rc)
; oligos_7nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m2_rc; m=2/5; ncol2=13; w=13; offset=1; strand=R; shift=1; score=0.864272; -tyCTTATCAGgdy---- ; cor=; Ncor= a 0 197 191 44 30 28 762 33 16 685 55 169 236 217 0 0 0 0 c 0 219 253 722 41 29 51 27 826 31 67 175 182 222 0 0 0 0 g 0 201 204 51 17 14 33 43 14 34 704 336 239 204 0 0 0 0 t 0 260 229 60 789 806 31 774 21 127 51 197 220 234 0 0 0 0

oligos_7nt_test_vs_ctrl_m1_rc_shift0 (oligos_7nt_test_vs_ctrl_m1_rc)
; oligos_7nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m1_rc; m=3/5; ncol2=14; w=14; offset=0; strand=R; shift=0; score=0.793008; tkCCTTATCTCTsy---- ; cor=; Ncor= a 190 163 47 45 27 36 660 18 23 43 53 75 165 194 0 0 0 0 c 189 196 594 639 48 44 59 23 728 34 570 107 226 221 0 0 0 0 g 191 204 66 44 29 31 38 32 22 27 102 45 226 153 0 0 0 0 t 238 245 101 80 704 697 51 735 35 704 83 581 191 240 0 0 0 0

oligos_7nt_test_vs_ctrl_m4_rc_shift0 (oligos_7nt_test_vs_ctrl_m4_rc)
; oligos_7nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m4_rc; m=4/5; ncol2=18; w=14; offset=0; strand=R; shift=0; score=0.665678; tkCCTTATCTgtccctyy ; cor=; Ncor= a 121 111 33 31 25 19 403 11 21 34 48 59 74 89 75 79 116 119 c 127 105 384 428 25 30 51 15 460 15 100 65 276 281 314 107 146 141 g 116 132 39 23 16 21 24 17 21 14 318 77 93 48 52 85 117 119 t 157 173 65 39 455 451 43 478 19 458 55 320 78 103 80 250 142 142

oligos_6nt_test_vs_ctrl_m1_shift1 (oligos_6nt_test_vs_ctrl_m1)
; oligos_7nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m1; m=5/5; ncol2=15; w=13; offset=1; strand=D; shift=1; score=0.608084; -tyCTTATCTCtgacy-- ; cor=; Ncor= a 0 190 181 49 36 33 806 20 26 59 88 161 143 417 237 237 0 0 c 0 236 268 781 44 40 56 31 868 30 656 120 209 200 292 255 0 0 g 0 221 203 52 26 29 41 34 23 38 131 101 443 143 219 214 0 0 t 0 311 306 76 852 856 55 873 41 831 83 576 163 198 210 252 0 0

One-to-n matrix alignment; reference matrix: oligos_6nt_test_vs_ctrl_m4_shift0 ; 5 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_test_vs_ctrl_m4_shift0 (oligos_6nt_test_vs_ctrl_m4)
; oligos_6nt_test_vs_ctrl_m4; m=0 (reference); ncol1=15; shift=0; ncol=16; kstcAGAGATAGGrr- ; Alignment reference a 164 142 111 91 514 36 644 37 642 46 647 94 68 241 222 0 c 158 200 86 453 48 49 23 28 29 67 15 29 70 153 153 0 g 205 207 109 103 64 608 24 631 30 63 39 555 536 202 199 0 t 198 176 419 78 99 32 34 29 24 549 24 47 51 129 151 0

oligos_6nt_test_vs_ctrl_m4_shift0 (oligos_6nt_test_vs_ctrl_m4)
; oligos_6nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m4; m=1/4; ncol2=15; w=15; offset=0; strand=D; shift=0; score= 1; kstcAGAGATAGGrr- ; cor=; Ncor= a 164 142 111 91 514 36 644 37 642 46 647 94 68 241 222 0 c 158 200 86 453 48 49 23 28 29 67 15 29 70 153 153 0 g 205 207 109 103 64 608 24 631 30 63 39 555 536 202 199 0 t 198 176 419 78 99 32 34 29 24 549 24 47 51 129 151 0

oligos_6nt_test_vs_ctrl_m1_rc_shift0 (oligos_6nt_test_vs_ctrl_m1_rc)
; oligos_6nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m1_rc; m=2/4; ncol2=15; w=15; offset=0; strand=R; shift=0; score=0.854341; rgtcaGAGATAAGra- ; cor=; Ncor= a 252 210 198 163 576 83 831 41 873 55 856 852 76 306 311 0 c 214 219 143 443 101 131 38 23 34 41 29 26 52 203 221 0 g 255 292 200 209 120 656 30 868 31 56 40 44 781 268 236 0 t 237 237 417 143 161 88 59 26 20 806 33 36 49 181 190 0

oligos_7nt_test_vs_ctrl_m5_shift2 (oligos_7nt_test_vs_ctrl_m5)
; oligos_6nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m5; m=3/4; ncol2=14; w=13; offset=2; strand=D; shift=2; score=0.666028; --rsAGAGATAAGArw ; cor=; Ncor= a 0 0 285 234 731 100 892 58 877 81 833 852 77 670 314 303 c 0 0 190 307 48 127 21 26 37 50 32 24 68 94 202 205 g 0 0 263 249 101 667 24 844 27 73 55 60 776 137 247 213 t 0 0 234 182 92 78 35 44 31 768 52 36 51 71 209 251

oligos_7nt_test_vs_ctrl_m1_shift2 (oligos_7nt_test_vs_ctrl_m1)
; oligos_6nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m1; m=4/4; ncol2=14; w=13; offset=2; strand=D; shift=2; score=0.653963; --rsAGAGATAAGGma ; cor=; Ncor= a 0 0 240 191 581 83 704 35 735 51 697 704 80 101 245 238 c 0 0 153 226 45 102 27 22 32 38 31 29 44 66 204 191 g 0 0 221 226 107 570 34 728 23 59 44 48 639 594 196 189 t 0 0 194 165 75 53 43 23 18 660 36 27 45 47 163 190

One-to-n matrix alignment; reference matrix: oligos_6nt_test_vs_ctrl_m1_shift1 ; 8 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_test_vs_ctrl_m1_shift1 (oligos_6nt_test_vs_ctrl_m1)
; oligos_6nt_test_vs_ctrl_m1; m=0 (reference); ncol1=15; shift=1; ncol=18; -tyCTTATCTCtgacy-- ; Alignment reference a 0 190 181 49 36 33 806 20 26 59 88 161 143 417 237 237 0 0 c 0 236 268 781 44 40 56 31 868 30 656 120 209 200 292 255 0 0 g 0 221 203 52 26 29 41 34 23 38 131 101 443 143 219 214 0 0 t 0 311 306 76 852 856 55 873 41 831 83 576 163 198 210 252 0 0

oligos_6nt_test_vs_ctrl_m1_shift1 (oligos_6nt_test_vs_ctrl_m1)
; oligos_6nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m1; m=1/7; ncol2=15; w=15; offset=0; strand=D; shift=1; score= 1; -tyCTTATCTCtgacy-- ; cor=; Ncor= a 0 190 181 49 36 33 806 20 26 59 88 161 143 417 237 237 0 0 c 0 236 268 781 44 40 56 31 868 30 656 120 209 200 292 255 0 0 g 0 221 203 52 26 29 41 34 23 38 131 101 443 143 219 214 0 0 t 0 311 306 76 852 856 55 873 41 831 83 576 163 198 210 252 0 0

oligos_6nt_test_vs_ctrl_m4_rc_shift1 (oligos_6nt_test_vs_ctrl_m4_rc)
; oligos_6nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m4_rc; m=2/7; ncol2=15; w=15; offset=0; strand=R; shift=1; score=0.854341; -yyCCTATCTCTgasm-- ; cor=; Ncor= a 0 151 129 51 47 24 549 24 29 34 32 99 78 419 176 198 0 0 c 0 199 202 536 555 39 63 30 631 24 608 64 103 109 207 205 0 0 g 0 153 153 70 29 15 67 29 28 23 49 48 453 86 200 158 0 0 t 0 222 241 68 94 647 46 642 37 644 36 514 91 111 142 164 0 0

oligos_7nt_test_vs_ctrl_m5_rc_shift0 (oligos_7nt_test_vs_ctrl_m5_rc)
; oligos_6nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m5_rc; m=3/7; ncol2=14; w=13; offset=-1; strand=R; shift=0; score=0.783303; wyTCTTATCTCTsy---- ; cor=; Ncor= a 251 209 71 51 36 52 768 31 44 35 78 92 182 234 0 0 0 0 c 213 247 137 776 60 55 73 27 844 24 667 101 249 263 0 0 0 0 g 205 202 94 68 24 32 50 37 26 21 127 48 307 190 0 0 0 0 t 303 314 670 77 852 833 81 877 58 892 100 731 234 285 0 0 0 0

oligos_7nt_test_vs_ctrl_m1_rc_shift0 (oligos_7nt_test_vs_ctrl_m1_rc)
; oligos_6nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m1_rc; m=4/7; ncol2=14; w=13; offset=-1; strand=R; shift=0; score=0.774531; tkCCTTATCTCTsy---- ; cor=; Ncor= a 190 163 47 45 27 36 660 18 23 43 53 75 165 194 0 0 0 0 c 189 196 594 639 48 44 59 23 728 34 570 107 226 221 0 0 0 0 g 191 204 66 44 29 31 38 32 22 27 102 45 226 153 0 0 0 0 t 238 245 101 80 704 697 51 735 35 704 83 581 191 240 0 0 0 0

oligos_7nt_test_vs_ctrl_m4_rc_shift0 (oligos_7nt_test_vs_ctrl_m4_rc)
; oligos_6nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m4_rc; m=5/7; ncol2=18; w=15; offset=-1; strand=R; shift=0; score=0.710556; tkCCTTATCTgtccctyy ; cor=; Ncor= a 121 111 33 31 25 19 403 11 21 34 48 59 74 89 75 79 116 119 c 127 105 384 428 25 30 51 15 460 15 100 65 276 281 314 107 146 141 g 116 132 39 23 16 21 24 17 21 14 318 77 93 48 52 85 117 119 t 157 173 65 39 455 451 43 478 19 458 55 320 78 103 80 250 142 142

oligos_6nt_test_vs_ctrl_m2_rc_shift1 (oligos_6nt_test_vs_ctrl_m2_rc)
; oligos_6nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m2_rc; m=6/7; ncol2=13; w=13; offset=0; strand=R; shift=1; score=0.637664; -tyCTTATCAGgdy---- ; cor=; Ncor= a 0 197 191 44 30 28 762 33 16 685 55 169 236 217 0 0 0 0 c 0 219 253 722 41 29 51 27 826 31 67 175 182 222 0 0 0 0 g 0 201 204 51 17 14 33 43 14 34 704 336 239 204 0 0 0 0 t 0 260 229 60 789 806 31 774 21 127 51 197 220 234 0 0 0 0

oligos_7nt_test_vs_ctrl_m2_shift0 (oligos_7nt_test_vs_ctrl_m2)
; oligos_6nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m2; m=7/7; ncol2=14; w=13; offset=-1; strand=D; shift=0; score=0.608084; ttCCTTATCAGtgh---- ; cor=; Ncor= a 148 135 52 46 22 26 535 30 25 499 34 64 156 184 0 0 0 0 c 162 152 500 524 28 21 52 25 577 21 63 80 158 176 0 0 0 0 g 161 161 44 21 13 21 34 25 18 22 497 85 179 108 0 0 0 0 t 179 202 54 59 587 582 29 570 30 108 56 421 157 182 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_7nt_test_vs_ctrl_m4_shift0 ; 7 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_test_vs_ctrl_m4_shift0 (oligos_7nt_test_vs_ctrl_m4)
; oligos_7nt_test_vs_ctrl_m4; m=0 (reference); ncol1=18; shift=0; ncol=18; rragggacAGATAAGGma ; Alignment reference a 142 142 250 80 103 78 320 55 458 19 478 43 451 455 39 65 173 157 c 119 117 85 52 48 93 77 318 14 21 17 24 21 16 23 39 132 116 g 141 146 107 314 281 276 65 100 15 460 15 51 30 25 428 384 105 127 t 119 116 79 75 89 74 59 48 34 21 11 403 19 25 31 33 111 121

oligos_7nt_test_vs_ctrl_m4_shift0 (oligos_7nt_test_vs_ctrl_m4)
; oligos_7nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m4; m=1/6; ncol2=18; w=18; offset=0; strand=D; shift=0; score= 1; rragggacAGATAAGGma ; cor=; Ncor= a 142 142 250 80 103 78 320 55 458 19 478 43 451 455 39 65 173 157 c 119 117 85 52 48 93 77 318 14 21 17 24 21 16 23 39 132 116 g 141 146 107 314 281 276 65 100 15 460 15 51 30 25 428 384 105 127 t 119 116 79 75 89 74 59 48 34 21 11 403 19 25 31 33 111 121

oligos_7nt_test_vs_ctrl_m1_shift4 (oligos_7nt_test_vs_ctrl_m1)
; oligos_7nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m1; m=2/6; ncol2=14; w=14; offset=4; strand=D; shift=4; score=0.715302; ----rsAGAGATAAGGma ; cor=; Ncor= a 0 0 0 0 240 191 581 83 704 35 735 51 697 704 80 101 245 238 c 0 0 0 0 153 226 45 102 27 22 32 38 31 29 44 66 204 191 g 0 0 0 0 221 226 107 570 34 728 23 59 44 48 639 594 196 189 t 0 0 0 0 194 165 75 53 43 23 18 660 36 27 45 47 163 190

oligos_6nt_test_vs_ctrl_m1_rc_shift2 (oligos_6nt_test_vs_ctrl_m1_rc)
; oligos_7nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m1_rc; m=3/6; ncol2=15; w=15; offset=2; strand=R; shift=2; score=0.710556; --rgtcaGAGATAAGra- ; cor=; Ncor= a 0 0 252 210 198 163 576 83 831 41 873 55 856 852 76 306 311 0 c 0 0 214 219 143 443 101 131 38 23 34 41 29 26 52 203 221 0 g 0 0 255 292 200 209 120 656 30 868 31 56 40 44 781 268 236 0 t 0 0 237 237 417 143 161 88 59 26 20 806 33 36 49 181 190 0

oligos_7nt_test_vs_ctrl_m2_rc_shift4 (oligos_7nt_test_vs_ctrl_m2_rc)
; oligos_7nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m2_rc; m=4/6; ncol2=14; w=14; offset=4; strand=R; shift=4; score=0.665678; ----dcaCTGATAAGGaa ; cor=; Ncor= a 0 0 0 0 182 157 421 56 108 30 570 29 582 587 59 54 202 179 c 0 0 0 0 108 179 85 497 22 18 25 34 21 13 21 44 161 161 g 0 0 0 0 176 158 80 63 21 577 25 52 21 28 524 500 152 162 t 0 0 0 0 184 156 64 34 499 25 30 535 26 22 46 52 135 148

oligos_7nt_test_vs_ctrl_m5_shift4 (oligos_7nt_test_vs_ctrl_m5)
; oligos_7nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m5; m=5/6; ncol2=14; w=14; offset=4; strand=D; shift=4; score=0.654059; ----rsAGAGATAAGArw ; cor=; Ncor= a 0 0 0 0 285 234 731 100 892 58 877 81 833 852 77 670 314 303 c 0 0 0 0 190 307 48 127 21 26 37 50 32 24 68 94 202 205 g 0 0 0 0 263 249 101 667 24 844 27 73 55 60 776 137 247 213 t 0 0 0 0 234 182 92 78 35 44 31 768 52 36 51 71 209 251

oligos_6nt_test_vs_ctrl_m2_shift4 (oligos_6nt_test_vs_ctrl_m2)
; oligos_7nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m2; m=6/6; ncol2=13; w=13; offset=4; strand=D; shift=4; score=0.563332; ----rhcCTGATAAGra- ; cor=; Ncor= a 0 0 0 0 234 220 197 51 127 21 774 31 806 789 60 229 260 0 c 0 0 0 0 204 239 336 704 34 14 43 33 14 17 51 204 201 0 g 0 0 0 0 222 182 175 67 31 826 27 51 29 41 722 253 219 0 t 0 0 0 0 217 236 169 55 685 16 33 762 28 30 44 191 197 0

One-to-n matrix alignment; reference matrix: oligos_7nt_test_vs_ctrl_m5_shift4 ; 6 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_test_vs_ctrl_m5_shift4 (oligos_7nt_test_vs_ctrl_m5)
; oligos_7nt_test_vs_ctrl_m5; m=0 (reference); ncol1=14; shift=4; ncol=18; ----rsAGAGATAAGArw ; Alignment reference a 0 0 0 0 285 234 731 100 892 58 877 81 833 852 77 670 314 303 c 0 0 0 0 190 307 48 127 21 26 37 50 32 24 68 94 202 205 g 0 0 0 0 263 249 101 667 24 844 27 73 55 60 776 137 247 213 t 0 0 0 0 234 182 92 78 35 44 31 768 52 36 51 71 209 251

oligos_7nt_test_vs_ctrl_m5_shift4 (oligos_7nt_test_vs_ctrl_m5)
; oligos_7nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m5; m=1/5; ncol2=14; w=14; offset=0; strand=D; shift=4; score= 1; ----rsAGAGATAAGArw ; cor=; Ncor= a 0 0 0 0 285 234 731 100 892 58 877 81 833 852 77 670 314 303 c 0 0 0 0 190 307 48 127 21 26 37 50 32 24 68 94 202 205 g 0 0 0 0 263 249 101 667 24 844 27 73 55 60 776 137 247 213 t 0 0 0 0 234 182 92 78 35 44 31 768 52 36 51 71 209 251

oligos_7nt_test_vs_ctrl_m1_shift4 (oligos_7nt_test_vs_ctrl_m1)
; oligos_7nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m1; m=2/5; ncol2=14; w=14; offset=0; strand=D; shift=4; score=0.921524; ----rsAGAGATAAGGma ; cor=; Ncor= a 0 0 0 0 240 191 581 83 704 35 735 51 697 704 80 101 245 238 c 0 0 0 0 153 226 45 102 27 22 32 38 31 29 44 66 204 191 g 0 0 0 0 221 226 107 570 34 728 23 59 44 48 639 594 196 189 t 0 0 0 0 194 165 75 53 43 23 18 660 36 27 45 47 163 190

oligos_6nt_test_vs_ctrl_m1_rc_shift2 (oligos_6nt_test_vs_ctrl_m1_rc)
; oligos_7nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m1_rc; m=3/5; ncol2=15; w=13; offset=-2; strand=R; shift=2; score=0.783303; --rgtcaGAGATAAGra- ; cor=; Ncor= a 0 0 252 210 198 163 576 83 831 41 873 55 856 852 76 306 311 0 c 0 0 214 219 143 443 101 131 38 23 34 41 29 26 52 203 221 0 g 0 0 255 292 200 209 120 656 30 868 31 56 40 44 781 268 236 0 t 0 0 237 237 417 143 161 88 59 26 20 806 33 36 49 181 190 0

oligos_6nt_test_vs_ctrl_m4_shift2 (oligos_6nt_test_vs_ctrl_m4)
; oligos_7nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m4; m=4/5; ncol2=15; w=13; offset=-2; strand=D; shift=2; score=0.666028; --kstcAGAGATAGGrr- ; cor=; Ncor= a 0 0 164 142 111 91 514 36 644 37 642 46 647 94 68 241 222 0 c 0 0 158 200 86 453 48 49 23 28 29 67 15 29 70 153 153 0 g 0 0 205 207 109 103 64 608 24 631 30 63 39 555 536 202 199 0 t 0 0 198 176 419 78 99 32 34 29 24 549 24 47 51 129 151 0

oligos_7nt_test_vs_ctrl_m4_shift0 (oligos_7nt_test_vs_ctrl_m4)
; oligos_7nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m4; m=5/5; ncol2=18; w=14; offset=-4; strand=D; shift=0; score=0.654059; rragggacAGATAAGGma ; cor=; Ncor= a 142 142 250 80 103 78 320 55 458 19 478 43 451 455 39 65 173 157 c 119 117 85 52 48 93 77 318 14 21 17 24 21 16 23 39 132 116 g 141 146 107 314 281 276 65 100 15 460 15 51 30 25 428 384 105 127 t 119 116 79 75 89 74 59 48 34 21 11 403 19 25 31 33 111 121

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_test_vs_ctrl_m2_shift4 (oligos_6nt_test_vs_ctrl_m2)				; oligos_6nt_test_vs_ctrl_m2; m=0 (reference); ncol1=13; shift=4; ncol=18; ----rhcCTGATAAGra- ; Alignment reference a 0 0 0 0 234 220 197 51 127 21 774 31 806 789 60 229 260 0 c 0 0 0 0 204 239 336 704 34 14 43 33 14 17 51 204 201 0 g 0 0 0 0 222 182 175 67 31 826 27 51 29 41 722 253 219 0 t 0 0 0 0 217 236 169 55 685 16 33 762 28 30 44 191 197 0
oligos_6nt_test_vs_ctrl_m2_shift4 (oligos_6nt_test_vs_ctrl_m2)				; oligos_6nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m2; m=1/4; ncol2=13; w=13; offset=0; strand=D; shift=4; score= 1; ----rhcCTGATAAGra- ; cor=; Ncor= a 0 0 0 0 234 220 197 51 127 21 774 31 806 789 60 229 260 0 c 0 0 0 0 204 239 336 704 34 14 43 33 14 17 51 204 201 0 g 0 0 0 0 222 182 175 67 31 826 27 51 29 41 722 253 219 0 t 0 0 0 0 217 236 169 55 685 16 33 762 28 30 44 191 197 0
oligos_7nt_test_vs_ctrl_m2_rc_shift4 (oligos_7nt_test_vs_ctrl_m2_rc)				; oligos_6nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m2_rc; m=2/4; ncol2=14; w=13; offset=0; strand=R; shift=4; score=0.864272; ----dcaCTGATAAGGaa ; cor=; Ncor= a 0 0 0 0 182 157 421 56 108 30 570 29 582 587 59 54 202 179 c 0 0 0 0 108 179 85 497 22 18 25 34 21 13 21 44 161 161 g 0 0 0 0 176 158 80 63 21 577 25 52 21 28 524 500 152 162 t 0 0 0 0 184 156 64 34 499 25 30 535 26 22 46 52 135 148
oligos_6nt_test_vs_ctrl_m1_rc_shift2 (oligos_6nt_test_vs_ctrl_m1_rc)				; oligos_6nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m1_rc; m=3/4; ncol2=15; w=13; offset=-2; strand=R; shift=2; score=0.637664; --rgtcaGAGATAAGra- ; cor=; Ncor= a 0 0 252 210 198 163 576 83 831 41 873 55 856 852 76 306 311 0 c 0 0 214 219 143 443 101 131 38 23 34 41 29 26 52 203 221 0 g 0 0 255 292 200 209 120 656 30 868 31 56 40 44 781 268 236 0 t 0 0 237 237 417 143 161 88 59 26 20 806 33 36 49 181 190 0
oligos_7nt_test_vs_ctrl_m4_shift0 (oligos_7nt_test_vs_ctrl_m4)				; oligos_6nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m4; m=4/4; ncol2=18; w=13; offset=-4; strand=D; shift=0; score=0.563332; rragggacAGATAAGGma ; cor=; Ncor= a 142 142 250 80 103 78 320 55 458 19 478 43 451 455 39 65 173 157 c 119 117 85 52 48 93 77 318 14 21 17 24 21 16 23 39 132 116 g 141 146 107 314 281 276 65 100 15 460 15 51 30 25 428 384 105 127 t 119 116 79 75 89 74 59 48 34 21 11 403 19 25 31 33 111 121

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_test_vs_ctrl_m3_shift0 (oligos_6nt_test_vs_ctrl_m3)				; oligos_6nt_test_vs_ctrl_m3; m=0 (reference); ncol1=16; shift=0; ncol=21; gkcTGGGTGACAGtsd----- ; Alignment reference a 117 108 54 44 41 34 22 39 21 401 16 395 24 56 115 128 0 0 0 0 0 c 110 117 239 42 45 20 20 21 37 20 420 14 35 46 120 107 0 0 0 0 0 g 137 124 117 56 335 376 418 25 400 28 23 33 383 59 137 120 0 0 0 0 0 t 115 130 69 337 58 49 19 394 21 30 20 37 37 318 107 124 0 0 0 0 0
oligos_6nt_test_vs_ctrl_m3_shift0 (oligos_6nt_test_vs_ctrl_m3)				; oligos_6nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m3; m=1/3; ncol2=16; w=16; offset=0; strand=D; shift=0; score= 1; gkcTGGGTGACAGtsd----- ; cor=; Ncor= a 117 108 54 44 41 34 22 39 21 401 16 395 24 56 115 128 0 0 0 0 0 c 110 117 239 42 45 20 20 21 37 20 420 14 35 46 120 107 0 0 0 0 0 g 137 124 117 56 335 376 418 25 400 28 23 33 383 59 137 120 0 0 0 0 0 t 115 130 69 337 58 49 19 394 21 30 20 37 37 318 107 124 0 0 0 0 0
oligos_7nt_test_vs_ctrl_m3_rc_shift2 (oligos_7nt_test_vs_ctrl_m3_rc)				; oligos_6nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m3_rc; m=2/3; ncol2=15; w=14; offset=2; strand=R; shift=2; score=0.697033; --ysTGGTGACAGttdc---- ; cor=; Ncor= a 0 0 109 106 57 35 39 44 27 500 22 479 29 88 70 143 142 0 0 0 0 c 0 0 154 177 42 25 35 21 31 13 507 18 30 88 80 111 166 0 0 0 0 g 0 0 142 150 43 473 473 29 492 21 21 31 467 65 78 160 129 0 0 0 0 t 0 0 166 138 429 38 24 477 21 37 21 43 45 330 343 157 134 0 0 0 0
oligos_6nt_test_vs_ctrl_m5_rc_shift0 (oligos_6nt_test_vs_ctrl_m5_rc)				; oligos_6nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m5_rc; m=3/3; ncol2=21; w=16; offset=0; strand=R; shift=0; score=0.639023; gmctgGGTGACAGGAcAGtsy ; cor=; Ncor= a 29 32 12 26 21 10 7 18 8 89 2 99 3 6 89 17 93 4 20 26 26 c 28 35 67 9 10 6 13 3 11 9 103 5 5 17 5 78 7 17 4 30 30 g 38 28 28 12 77 91 94 11 90 9 11 7 102 89 14 15 9 91 21 34 29 t 24 24 12 72 11 12 5 87 10 12 3 8 9 7 11 9 10 7 74 29 34

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_test_vs_ctrl_m1_shift4 (oligos_7nt_test_vs_ctrl_m1)				; oligos_7nt_test_vs_ctrl_m1; m=0 (reference); ncol1=14; shift=4; ncol=18; ----rsAGAGATAAGGma ; Alignment reference a 0 0 0 0 240 191 581 83 704 35 735 51 697 704 80 101 245 238 c 0 0 0 0 153 226 45 102 27 22 32 38 31 29 44 66 204 191 g 0 0 0 0 221 226 107 570 34 728 23 59 44 48 639 594 196 189 t 0 0 0 0 194 165 75 53 43 23 18 660 36 27 45 47 163 190
oligos_7nt_test_vs_ctrl_m1_shift4 (oligos_7nt_test_vs_ctrl_m1)				; oligos_7nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m1; m=1/6; ncol2=14; w=14; offset=0; strand=D; shift=4; score= 1; ----rsAGAGATAAGGma ; cor=; Ncor= a 0 0 0 0 240 191 581 83 704 35 735 51 697 704 80 101 245 238 c 0 0 0 0 153 226 45 102 27 22 32 38 31 29 44 66 204 191 g 0 0 0 0 221 226 107 570 34 728 23 59 44 48 639 594 196 189 t 0 0 0 0 194 165 75 53 43 23 18 660 36 27 45 47 163 190
oligos_7nt_test_vs_ctrl_m5_shift4 (oligos_7nt_test_vs_ctrl_m5)				; oligos_7nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m5; m=2/6; ncol2=14; w=14; offset=0; strand=D; shift=4; score=0.921524; ----rsAGAGATAAGArw ; cor=; Ncor= a 0 0 0 0 285 234 731 100 892 58 877 81 833 852 77 670 314 303 c 0 0 0 0 190 307 48 127 21 26 37 50 32 24 68 94 202 205 g 0 0 0 0 263 249 101 667 24 844 27 73 55 60 776 137 247 213 t 0 0 0 0 234 182 92 78 35 44 31 768 52 36 51 71 209 251
oligos_7nt_test_vs_ctrl_m2_rc_shift4 (oligos_7nt_test_vs_ctrl_m2_rc)				; oligos_7nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m2_rc; m=3/6; ncol2=14; w=14; offset=0; strand=R; shift=4; score=0.793008; ----dcaCTGATAAGGaa ; cor=; Ncor= a 0 0 0 0 182 157 421 56 108 30 570 29 582 587 59 54 202 179 c 0 0 0 0 108 179 85 497 22 18 25 34 21 13 21 44 161 161 g 0 0 0 0 176 158 80 63 21 577 25 52 21 28 524 500 152 162 t 0 0 0 0 184 156 64 34 499 25 30 535 26 22 46 52 135 148
oligos_6nt_test_vs_ctrl_m1_rc_shift2 (oligos_6nt_test_vs_ctrl_m1_rc)				; oligos_7nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m1_rc; m=4/6; ncol2=15; w=13; offset=-2; strand=R; shift=2; score=0.774531; --rgtcaGAGATAAGra- ; cor=; Ncor= a 0 0 252 210 198 163 576 83 831 41 873 55 856 852 76 306 311 0 c 0 0 214 219 143 443 101 131 38 23 34 41 29 26 52 203 221 0 g 0 0 255 292 200 209 120 656 30 868 31 56 40 44 781 268 236 0 t 0 0 237 237 417 143 161 88 59 26 20 806 33 36 49 181 190 0
oligos_7nt_test_vs_ctrl_m4_shift0 (oligos_7nt_test_vs_ctrl_m4)				; oligos_7nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m4; m=5/6; ncol2=18; w=14; offset=-4; strand=D; shift=0; score=0.715302; rragggacAGATAAGGma ; cor=; Ncor= a 142 142 250 80 103 78 320 55 458 19 478 43 451 455 39 65 173 157 c 119 117 85 52 48 93 77 318 14 21 17 24 21 16 23 39 132 116 g 141 146 107 314 281 276 65 100 15 460 15 51 30 25 428 384 105 127 t 119 116 79 75 89 74 59 48 34 21 11 403 19 25 31 33 111 121
oligos_6nt_test_vs_ctrl_m4_shift2 (oligos_6nt_test_vs_ctrl_m4)				; oligos_7nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m4; m=6/6; ncol2=15; w=13; offset=-2; strand=D; shift=2; score=0.653963; --kstcAGAGATAGGrr- ; cor=; Ncor= a 0 0 164 142 111 91 514 36 644 37 642 46 647 94 68 241 222 0 c 0 0 158 200 86 453 48 49 23 28 29 67 15 29 70 153 153 0 g 0 0 205 207 109 103 64 608 24 631 30 63 39 555 536 202 199 0 t 0 0 198 176 419 78 99 32 34 29 24 549 24 47 51 129 151 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_test_vs_ctrl_m2_shift0 (oligos_7nt_test_vs_ctrl_m2)				; oligos_7nt_test_vs_ctrl_m2; m=0 (reference); ncol1=14; shift=0; ncol=18; ttCCTTATCAGtgh---- ; Alignment reference a 148 135 52 46 22 26 535 30 25 499 34 64 156 184 0 0 0 0 c 162 152 500 524 28 21 52 25 577 21 63 80 158 176 0 0 0 0 g 161 161 44 21 13 21 34 25 18 22 497 85 179 108 0 0 0 0 t 179 202 54 59 587 582 29 570 30 108 56 421 157 182 0 0 0 0
oligos_7nt_test_vs_ctrl_m2_shift0 (oligos_7nt_test_vs_ctrl_m2)				; oligos_7nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m2; m=1/5; ncol2=14; w=14; offset=0; strand=D; shift=0; score= 1; ttCCTTATCAGtgh---- ; cor=; Ncor= a 148 135 52 46 22 26 535 30 25 499 34 64 156 184 0 0 0 0 c 162 152 500 524 28 21 52 25 577 21 63 80 158 176 0 0 0 0 g 161 161 44 21 13 21 34 25 18 22 497 85 179 108 0 0 0 0 t 179 202 54 59 587 582 29 570 30 108 56 421 157 182 0 0 0 0
oligos_6nt_test_vs_ctrl_m2_rc_shift1 (oligos_6nt_test_vs_ctrl_m2_rc)				; oligos_7nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m2_rc; m=2/5; ncol2=13; w=13; offset=1; strand=R; shift=1; score=0.864272; -tyCTTATCAGgdy---- ; cor=; Ncor= a 0 197 191 44 30 28 762 33 16 685 55 169 236 217 0 0 0 0 c 0 219 253 722 41 29 51 27 826 31 67 175 182 222 0 0 0 0 g 0 201 204 51 17 14 33 43 14 34 704 336 239 204 0 0 0 0 t 0 260 229 60 789 806 31 774 21 127 51 197 220 234 0 0 0 0
oligos_7nt_test_vs_ctrl_m1_rc_shift0 (oligos_7nt_test_vs_ctrl_m1_rc)				; oligos_7nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m1_rc; m=3/5; ncol2=14; w=14; offset=0; strand=R; shift=0; score=0.793008; tkCCTTATCTCTsy---- ; cor=; Ncor= a 190 163 47 45 27 36 660 18 23 43 53 75 165 194 0 0 0 0 c 189 196 594 639 48 44 59 23 728 34 570 107 226 221 0 0 0 0 g 191 204 66 44 29 31 38 32 22 27 102 45 226 153 0 0 0 0 t 238 245 101 80 704 697 51 735 35 704 83 581 191 240 0 0 0 0
oligos_7nt_test_vs_ctrl_m4_rc_shift0 (oligos_7nt_test_vs_ctrl_m4_rc)				; oligos_7nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m4_rc; m=4/5; ncol2=18; w=14; offset=0; strand=R; shift=0; score=0.665678; tkCCTTATCTgtccctyy ; cor=; Ncor= a 121 111 33 31 25 19 403 11 21 34 48 59 74 89 75 79 116 119 c 127 105 384 428 25 30 51 15 460 15 100 65 276 281 314 107 146 141 g 116 132 39 23 16 21 24 17 21 14 318 77 93 48 52 85 117 119 t 157 173 65 39 455 451 43 478 19 458 55 320 78 103 80 250 142 142
oligos_6nt_test_vs_ctrl_m1_shift1 (oligos_6nt_test_vs_ctrl_m1)				; oligos_7nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m1; m=5/5; ncol2=15; w=13; offset=1; strand=D; shift=1; score=0.608084; -tyCTTATCTCtgacy-- ; cor=; Ncor= a 0 190 181 49 36 33 806 20 26 59 88 161 143 417 237 237 0 0 c 0 236 268 781 44 40 56 31 868 30 656 120 209 200 292 255 0 0 g 0 221 203 52 26 29 41 34 23 38 131 101 443 143 219 214 0 0 t 0 311 306 76 852 856 55 873 41 831 83 576 163 198 210 252 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_test_vs_ctrl_m4_shift0 (oligos_6nt_test_vs_ctrl_m4)				; oligos_6nt_test_vs_ctrl_m4; m=0 (reference); ncol1=15; shift=0; ncol=16; kstcAGAGATAGGrr- ; Alignment reference a 164 142 111 91 514 36 644 37 642 46 647 94 68 241 222 0 c 158 200 86 453 48 49 23 28 29 67 15 29 70 153 153 0 g 205 207 109 103 64 608 24 631 30 63 39 555 536 202 199 0 t 198 176 419 78 99 32 34 29 24 549 24 47 51 129 151 0
oligos_6nt_test_vs_ctrl_m4_shift0 (oligos_6nt_test_vs_ctrl_m4)				; oligos_6nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m4; m=1/4; ncol2=15; w=15; offset=0; strand=D; shift=0; score= 1; kstcAGAGATAGGrr- ; cor=; Ncor= a 164 142 111 91 514 36 644 37 642 46 647 94 68 241 222 0 c 158 200 86 453 48 49 23 28 29 67 15 29 70 153 153 0 g 205 207 109 103 64 608 24 631 30 63 39 555 536 202 199 0 t 198 176 419 78 99 32 34 29 24 549 24 47 51 129 151 0
oligos_6nt_test_vs_ctrl_m1_rc_shift0 (oligos_6nt_test_vs_ctrl_m1_rc)				; oligos_6nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m1_rc; m=2/4; ncol2=15; w=15; offset=0; strand=R; shift=0; score=0.854341; rgtcaGAGATAAGra- ; cor=; Ncor= a 252 210 198 163 576 83 831 41 873 55 856 852 76 306 311 0 c 214 219 143 443 101 131 38 23 34 41 29 26 52 203 221 0 g 255 292 200 209 120 656 30 868 31 56 40 44 781 268 236 0 t 237 237 417 143 161 88 59 26 20 806 33 36 49 181 190 0
oligos_7nt_test_vs_ctrl_m5_shift2 (oligos_7nt_test_vs_ctrl_m5)				; oligos_6nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m5; m=3/4; ncol2=14; w=13; offset=2; strand=D; shift=2; score=0.666028; --rsAGAGATAAGArw ; cor=; Ncor= a 0 0 285 234 731 100 892 58 877 81 833 852 77 670 314 303 c 0 0 190 307 48 127 21 26 37 50 32 24 68 94 202 205 g 0 0 263 249 101 667 24 844 27 73 55 60 776 137 247 213 t 0 0 234 182 92 78 35 44 31 768 52 36 51 71 209 251
oligos_7nt_test_vs_ctrl_m1_shift2 (oligos_7nt_test_vs_ctrl_m1)				; oligos_6nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m1; m=4/4; ncol2=14; w=13; offset=2; strand=D; shift=2; score=0.653963; --rsAGAGATAAGGma ; cor=; Ncor= a 0 0 240 191 581 83 704 35 735 51 697 704 80 101 245 238 c 0 0 153 226 45 102 27 22 32 38 31 29 44 66 204 191 g 0 0 221 226 107 570 34 728 23 59 44 48 639 594 196 189 t 0 0 194 165 75 53 43 23 18 660 36 27 45 47 163 190

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_test_vs_ctrl_m1_shift1 (oligos_6nt_test_vs_ctrl_m1)				; oligos_6nt_test_vs_ctrl_m1; m=0 (reference); ncol1=15; shift=1; ncol=18; -tyCTTATCTCtgacy-- ; Alignment reference a 0 190 181 49 36 33 806 20 26 59 88 161 143 417 237 237 0 0 c 0 236 268 781 44 40 56 31 868 30 656 120 209 200 292 255 0 0 g 0 221 203 52 26 29 41 34 23 38 131 101 443 143 219 214 0 0 t 0 311 306 76 852 856 55 873 41 831 83 576 163 198 210 252 0 0
oligos_6nt_test_vs_ctrl_m1_shift1 (oligos_6nt_test_vs_ctrl_m1)				; oligos_6nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m1; m=1/7; ncol2=15; w=15; offset=0; strand=D; shift=1; score= 1; -tyCTTATCTCtgacy-- ; cor=; Ncor= a 0 190 181 49 36 33 806 20 26 59 88 161 143 417 237 237 0 0 c 0 236 268 781 44 40 56 31 868 30 656 120 209 200 292 255 0 0 g 0 221 203 52 26 29 41 34 23 38 131 101 443 143 219 214 0 0 t 0 311 306 76 852 856 55 873 41 831 83 576 163 198 210 252 0 0
oligos_6nt_test_vs_ctrl_m4_rc_shift1 (oligos_6nt_test_vs_ctrl_m4_rc)				; oligos_6nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m4_rc; m=2/7; ncol2=15; w=15; offset=0; strand=R; shift=1; score=0.854341; -yyCCTATCTCTgasm-- ; cor=; Ncor= a 0 151 129 51 47 24 549 24 29 34 32 99 78 419 176 198 0 0 c 0 199 202 536 555 39 63 30 631 24 608 64 103 109 207 205 0 0 g 0 153 153 70 29 15 67 29 28 23 49 48 453 86 200 158 0 0 t 0 222 241 68 94 647 46 642 37 644 36 514 91 111 142 164 0 0
oligos_7nt_test_vs_ctrl_m5_rc_shift0 (oligos_7nt_test_vs_ctrl_m5_rc)				; oligos_6nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m5_rc; m=3/7; ncol2=14; w=13; offset=-1; strand=R; shift=0; score=0.783303; wyTCTTATCTCTsy---- ; cor=; Ncor= a 251 209 71 51 36 52 768 31 44 35 78 92 182 234 0 0 0 0 c 213 247 137 776 60 55 73 27 844 24 667 101 249 263 0 0 0 0 g 205 202 94 68 24 32 50 37 26 21 127 48 307 190 0 0 0 0 t 303 314 670 77 852 833 81 877 58 892 100 731 234 285 0 0 0 0
oligos_7nt_test_vs_ctrl_m1_rc_shift0 (oligos_7nt_test_vs_ctrl_m1_rc)				; oligos_6nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m1_rc; m=4/7; ncol2=14; w=13; offset=-1; strand=R; shift=0; score=0.774531; tkCCTTATCTCTsy---- ; cor=; Ncor= a 190 163 47 45 27 36 660 18 23 43 53 75 165 194 0 0 0 0 c 189 196 594 639 48 44 59 23 728 34 570 107 226 221 0 0 0 0 g 191 204 66 44 29 31 38 32 22 27 102 45 226 153 0 0 0 0 t 238 245 101 80 704 697 51 735 35 704 83 581 191 240 0 0 0 0
oligos_7nt_test_vs_ctrl_m4_rc_shift0 (oligos_7nt_test_vs_ctrl_m4_rc)				; oligos_6nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m4_rc; m=5/7; ncol2=18; w=15; offset=-1; strand=R; shift=0; score=0.710556; tkCCTTATCTgtccctyy ; cor=; Ncor= a 121 111 33 31 25 19 403 11 21 34 48 59 74 89 75 79 116 119 c 127 105 384 428 25 30 51 15 460 15 100 65 276 281 314 107 146 141 g 116 132 39 23 16 21 24 17 21 14 318 77 93 48 52 85 117 119 t 157 173 65 39 455 451 43 478 19 458 55 320 78 103 80 250 142 142
oligos_6nt_test_vs_ctrl_m2_rc_shift1 (oligos_6nt_test_vs_ctrl_m2_rc)				; oligos_6nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m2_rc; m=6/7; ncol2=13; w=13; offset=0; strand=R; shift=1; score=0.637664; -tyCTTATCAGgdy---- ; cor=; Ncor= a 0 197 191 44 30 28 762 33 16 685 55 169 236 217 0 0 0 0 c 0 219 253 722 41 29 51 27 826 31 67 175 182 222 0 0 0 0 g 0 201 204 51 17 14 33 43 14 34 704 336 239 204 0 0 0 0 t 0 260 229 60 789 806 31 774 21 127 51 197 220 234 0 0 0 0
oligos_7nt_test_vs_ctrl_m2_shift0 (oligos_7nt_test_vs_ctrl_m2)				; oligos_6nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m2; m=7/7; ncol2=14; w=13; offset=-1; strand=D; shift=0; score=0.608084; ttCCTTATCAGtgh---- ; cor=; Ncor= a 148 135 52 46 22 26 535 30 25 499 34 64 156 184 0 0 0 0 c 162 152 500 524 28 21 52 25 577 21 63 80 158 176 0 0 0 0 g 161 161 44 21 13 21 34 25 18 22 497 85 179 108 0 0 0 0 t 179 202 54 59 587 582 29 570 30 108 56 421 157 182 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_test_vs_ctrl_m4_shift0 (oligos_7nt_test_vs_ctrl_m4)				; oligos_7nt_test_vs_ctrl_m4; m=0 (reference); ncol1=18; shift=0; ncol=18; rragggacAGATAAGGma ; Alignment reference a 142 142 250 80 103 78 320 55 458 19 478 43 451 455 39 65 173 157 c 119 117 85 52 48 93 77 318 14 21 17 24 21 16 23 39 132 116 g 141 146 107 314 281 276 65 100 15 460 15 51 30 25 428 384 105 127 t 119 116 79 75 89 74 59 48 34 21 11 403 19 25 31 33 111 121
oligos_7nt_test_vs_ctrl_m4_shift0 (oligos_7nt_test_vs_ctrl_m4)				; oligos_7nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m4; m=1/6; ncol2=18; w=18; offset=0; strand=D; shift=0; score= 1; rragggacAGATAAGGma ; cor=; Ncor= a 142 142 250 80 103 78 320 55 458 19 478 43 451 455 39 65 173 157 c 119 117 85 52 48 93 77 318 14 21 17 24 21 16 23 39 132 116 g 141 146 107 314 281 276 65 100 15 460 15 51 30 25 428 384 105 127 t 119 116 79 75 89 74 59 48 34 21 11 403 19 25 31 33 111 121
oligos_7nt_test_vs_ctrl_m1_shift4 (oligos_7nt_test_vs_ctrl_m1)				; oligos_7nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m1; m=2/6; ncol2=14; w=14; offset=4; strand=D; shift=4; score=0.715302; ----rsAGAGATAAGGma ; cor=; Ncor= a 0 0 0 0 240 191 581 83 704 35 735 51 697 704 80 101 245 238 c 0 0 0 0 153 226 45 102 27 22 32 38 31 29 44 66 204 191 g 0 0 0 0 221 226 107 570 34 728 23 59 44 48 639 594 196 189 t 0 0 0 0 194 165 75 53 43 23 18 660 36 27 45 47 163 190
oligos_6nt_test_vs_ctrl_m1_rc_shift2 (oligos_6nt_test_vs_ctrl_m1_rc)				; oligos_7nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m1_rc; m=3/6; ncol2=15; w=15; offset=2; strand=R; shift=2; score=0.710556; --rgtcaGAGATAAGra- ; cor=; Ncor= a 0 0 252 210 198 163 576 83 831 41 873 55 856 852 76 306 311 0 c 0 0 214 219 143 443 101 131 38 23 34 41 29 26 52 203 221 0 g 0 0 255 292 200 209 120 656 30 868 31 56 40 44 781 268 236 0 t 0 0 237 237 417 143 161 88 59 26 20 806 33 36 49 181 190 0
oligos_7nt_test_vs_ctrl_m2_rc_shift4 (oligos_7nt_test_vs_ctrl_m2_rc)				; oligos_7nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m2_rc; m=4/6; ncol2=14; w=14; offset=4; strand=R; shift=4; score=0.665678; ----dcaCTGATAAGGaa ; cor=; Ncor= a 0 0 0 0 182 157 421 56 108 30 570 29 582 587 59 54 202 179 c 0 0 0 0 108 179 85 497 22 18 25 34 21 13 21 44 161 161 g 0 0 0 0 176 158 80 63 21 577 25 52 21 28 524 500 152 162 t 0 0 0 0 184 156 64 34 499 25 30 535 26 22 46 52 135 148
oligos_7nt_test_vs_ctrl_m5_shift4 (oligos_7nt_test_vs_ctrl_m5)				; oligos_7nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m5; m=5/6; ncol2=14; w=14; offset=4; strand=D; shift=4; score=0.654059; ----rsAGAGATAAGArw ; cor=; Ncor= a 0 0 0 0 285 234 731 100 892 58 877 81 833 852 77 670 314 303 c 0 0 0 0 190 307 48 127 21 26 37 50 32 24 68 94 202 205 g 0 0 0 0 263 249 101 667 24 844 27 73 55 60 776 137 247 213 t 0 0 0 0 234 182 92 78 35 44 31 768 52 36 51 71 209 251
oligos_6nt_test_vs_ctrl_m2_shift4 (oligos_6nt_test_vs_ctrl_m2)				; oligos_7nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m2; m=6/6; ncol2=13; w=13; offset=4; strand=D; shift=4; score=0.563332; ----rhcCTGATAAGra- ; cor=; Ncor= a 0 0 0 0 234 220 197 51 127 21 774 31 806 789 60 229 260 0 c 0 0 0 0 204 239 336 704 34 14 43 33 14 17 51 204 201 0 g 0 0 0 0 222 182 175 67 31 826 27 51 29 41 722 253 219 0 t 0 0 0 0 217 236 169 55 685 16 33 762 28 30 44 191 197 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_test_vs_ctrl_m5_shift4 (oligos_7nt_test_vs_ctrl_m5)				; oligos_7nt_test_vs_ctrl_m5; m=0 (reference); ncol1=14; shift=4; ncol=18; ----rsAGAGATAAGArw ; Alignment reference a 0 0 0 0 285 234 731 100 892 58 877 81 833 852 77 670 314 303 c 0 0 0 0 190 307 48 127 21 26 37 50 32 24 68 94 202 205 g 0 0 0 0 263 249 101 667 24 844 27 73 55 60 776 137 247 213 t 0 0 0 0 234 182 92 78 35 44 31 768 52 36 51 71 209 251
oligos_7nt_test_vs_ctrl_m5_shift4 (oligos_7nt_test_vs_ctrl_m5)				; oligos_7nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m5; m=1/5; ncol2=14; w=14; offset=0; strand=D; shift=4; score= 1; ----rsAGAGATAAGArw ; cor=; Ncor= a 0 0 0 0 285 234 731 100 892 58 877 81 833 852 77 670 314 303 c 0 0 0 0 190 307 48 127 21 26 37 50 32 24 68 94 202 205 g 0 0 0 0 263 249 101 667 24 844 27 73 55 60 776 137 247 213 t 0 0 0 0 234 182 92 78 35 44 31 768 52 36 51 71 209 251
oligos_7nt_test_vs_ctrl_m1_shift4 (oligos_7nt_test_vs_ctrl_m1)				; oligos_7nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m1; m=2/5; ncol2=14; w=14; offset=0; strand=D; shift=4; score=0.921524; ----rsAGAGATAAGGma ; cor=; Ncor= a 0 0 0 0 240 191 581 83 704 35 735 51 697 704 80 101 245 238 c 0 0 0 0 153 226 45 102 27 22 32 38 31 29 44 66 204 191 g 0 0 0 0 221 226 107 570 34 728 23 59 44 48 639 594 196 189 t 0 0 0 0 194 165 75 53 43 23 18 660 36 27 45 47 163 190
oligos_6nt_test_vs_ctrl_m1_rc_shift2 (oligos_6nt_test_vs_ctrl_m1_rc)				; oligos_7nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m1_rc; m=3/5; ncol2=15; w=13; offset=-2; strand=R; shift=2; score=0.783303; --rgtcaGAGATAAGra- ; cor=; Ncor= a 0 0 252 210 198 163 576 83 831 41 873 55 856 852 76 306 311 0 c 0 0 214 219 143 443 101 131 38 23 34 41 29 26 52 203 221 0 g 0 0 255 292 200 209 120 656 30 868 31 56 40 44 781 268 236 0 t 0 0 237 237 417 143 161 88 59 26 20 806 33 36 49 181 190 0
oligos_6nt_test_vs_ctrl_m4_shift2 (oligos_6nt_test_vs_ctrl_m4)				; oligos_7nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m4; m=4/5; ncol2=15; w=13; offset=-2; strand=D; shift=2; score=0.666028; --kstcAGAGATAGGrr- ; cor=; Ncor= a 0 0 164 142 111 91 514 36 644 37 642 46 647 94 68 241 222 0 c 0 0 158 200 86 453 48 49 23 28 29 67 15 29 70 153 153 0 g 0 0 205 207 109 103 64 608 24 631 30 63 39 555 536 202 199 0 t 0 0 198 176 419 78 99 32 34 29 24 549 24 47 51 129 151 0
oligos_7nt_test_vs_ctrl_m4_shift0 (oligos_7nt_test_vs_ctrl_m4)				; oligos_7nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m4; m=5/5; ncol2=18; w=14; offset=-4; strand=D; shift=0; score=0.654059; rragggacAGATAAGGma ; cor=; Ncor= a 142 142 250 80 103 78 320 55 458 19 478 43 451 455 39 65 173 157 c 119 117 85 52 48 93 77 318 14 21 17 24 21 16 23 39 132 116 g 141 146 107 314 281 276 65 100 15 460 15 51 30 25 428 384 105 127 t 119 116 79 75 89 74 59 48 34 21 11 403 19 25 31 33 111 121