One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2021/02/16/peak-motifs.2021-02-16.144431_2021-02-16.144431_tXA9Xd/results/discovered_motifs/peak-motifs_motifs_discovered.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2021/02/16/peak-motifs.2021-02-16.144431_2021-02-16.144431_tXA9Xd/results/discovered_vs_db/peak-motifs_motifs_vs_db_jaspar_core_nonredundant_vertebrates.tab

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv4_m3_shift5 ; 78 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv4_m3_shift5 (oligos_7nt_mkv4_m3)
; oligos_7nt_mkv4_m3; m=0 (reference); ncol1=12; shift=5; ncol=17; -----wtATGCwAATgw ; Alignment reference a 0 0 0 0 0 298 176 686 10 10 39 216 634 705 45 177 210 c 0 0 0 0 0 79 154 15 7 8 630 18 44 10 34 120 141 g 0 0 0 0 0 120 131 14 16 688 23 50 39 5 35 258 171 t 0 0 0 0 0 235 271 17 699 26 40 448 15 12 618 177 210

MA0787.1_shift5 (POU3F2)
; oligos_7nt_mkv4_m3 versus MA0787.1 (POU3F2); m=1/77; ncol2=12; w=12; offset=0; strand=D; shift=5; score=0.934706; -----wTATGCwAATka ; cor=; Ncor= a 0 0 0 0 0 591.0 163.0 1292.0 28.0 19.0 68.0 688.0 1292.0 1292.0 63.0 137.0 1292.0 c 0 0 0 0 0 61.0 65.0 16.0 30.0 9.0 1292.0 4.0 16.0 6.0 19.0 165.0 262.0 g 0 0 0 0 0 171.0 40.0 25.0 12.0 1292.0 153.0 1.0 32.0 0.0 28.0 452.0 261.0 t 0 0 0 0 0 700.0 1292.0 0.0 1292.0 60.0 372.0 604.0 45.0 13.0 1292.0 840.0 562.0

MA0786.1_shift5 (POU3F1)
; oligos_7nt_mkv4_m3 versus MA0786.1 (POU3F1); m=2/77; ncol2=12; w=12; offset=0; strand=D; shift=5; score=0.93311; -----wTATGywAATkw ; cor=; Ncor= a 0 0 0 0 0 1034.0 505.0 2471.0 44.0 37.0 170.0 1423.0 2471.0 2471.0 259.0 382.0 1510.0 c 0 0 0 0 0 126.0 186.0 7.0 53.0 13.0 2471.0 1.0 103.0 20.0 95.0 302.0 478.0 g 0 0 0 0 0 322.0 128.0 26.0 21.0 2471.0 413.0 21.0 130.0 25.0 128.0 620.0 452.0 t 0 0 0 0 0 1437.0 2471.0 21.0 2471.0 232.0 1119.0 1048.0 284.0 63.0 2471.0 1167.0 961.0

MA0788.1_shift4 (POU3F3)
; oligos_7nt_mkv4_m3 versus MA0788.1 (POU3F3); m=3/77; ncol2=13; w=12; offset=-1; strand=D; shift=4; score=0.854467; ----wwTATGCwAATtw ; cor=; Ncor= a 0 0 0 0 576.0 440.0 129.0 1078.0 25.0 22.0 28.0 506.0 1078.0 1078.0 53.0 240.0 536.0 c 0 0 0 0 75.0 41.0 57.0 11.0 33.0 10.0 1078.0 4.0 11.0 6.0 20.0 141.0 85.0 g 0 0 0 0 137.0 131.0 64.0 12.0 49.0 1078.0 118.0 1.0 77.0 15.0 12.0 237.0 115.0 t 0 0 0 0 290.0 637.0 1078.0 30.0 1078.0 86.0 343.0 572.0 79.0 14.0 1078.0 1078.0 542.0

MA0507.1_rc_shift5 (POU2F2_rc)
; oligos_7nt_mkv4_m3 versus MA0507.1_rc (POU2F2_rc); m=4/77; ncol2=13; w=12; offset=0; strand=R; shift=5; score=0.835311; -----wyATGCAAATkm ; cor=; Ncor= a 0 0 0 0 0 1225.0 476.0 2285.0 0.0 16.0 132.0 2287.0 2029.0 2287.0 251.0 442.0 898.0 c 0 0 0 0 0 107.0 613.0 0.0 0.0 0.0 1997.0 0.0 0.0 0.0 1.0 415.0 593.0 g 0 0 0 0 0 361.0 39.0 2.0 30.0 2271.0 0.0 0.0 2.0 0.0 19.0 825.0 266.0 t 0 0 0 0 0 594.0 1159.0 0.0 2257.0 0.0 158.0 0.0 256.0 0.0 2016.0 605.0 530.0

MA0627.2_shift4 (POU2F3)
; oligos_7nt_mkv4_m3 versus MA0627.2 (POU2F3); m=5/77; ncol2=13; w=12; offset=-1; strand=D; shift=4; score=0.829856; ----watATGCAAATww ; cor=; Ncor= a 0 0 0 0 17399.0 26660.0 8522.0 54550.0 1090.0 980.0 946.0 54915.0 51382.0 55302.0 5115.0 16288.0 18907.0 c 0 0 0 0 11383.0 6824.0 6885.0 194.0 322.0 251.0 50288.0 80.0 567.0 164.0 3478.0 10595.0 11936.0 g 0 0 0 0 10722.0 8770.0 3029.0 354.0 1251.0 51971.0 1079.0 138.0 804.0 233.0 4098.0 13237.0 7941.0 t 0 0 0 0 16525.0 13775.0 37593.0 931.0 53366.0 2827.0 3716.0 896.0 3276.0 330.0 43338.0 15909.0 17245.0

MA1115.1_shift5 (POU5F1)
; oligos_7nt_mkv4_m3 versus MA1115.1 (POU5F1); m=6/77; ncol2=11; w=11; offset=0; strand=D; shift=5; score=0.824772; -----wwATGCAAAtd- ; cor=; Ncor= a 0 0 0 0 0 4982.0 3603.0 12693.0 83.0 717.0 533.0 11756.0 10560.0 12280.0 2556.0 3476.0 0 c 0 0 0 0 0 1290.0 2785.0 122.0 130.0 192.0 10310.0 132.0 690.0 270.0 2104.0 2450.0 0 g 0 0 0 0 0 1996.0 1908.0 229.0 67.0 11571.0 548.0 118.0 1026.0 257.0 2071.0 3551.0 0 t 0 0 0 0 0 4846.0 4818.0 70.0 12834.0 634.0 1723.0 1108.0 838.0 307.0 6383.0 3637.0 0

MA0785.1_shift4 (POU2F1)
; oligos_7nt_mkv4_m3 versus MA0785.1 (POU2F1); m=7/77; ncol2=12; w=11; offset=-1; strand=D; shift=4; score=0.789961; ----awTATGcwAATt- ; cor=; Ncor= a 0 0 0 0 5076.0 5351.0 756.0 10582.0 153.0 186.0 300.0 6932.0 10582.0 10582.0 1422.0 1976.0 0 c 0 0 0 0 1938.0 1046.0 1347.0 12.0 501.0 82.0 10582.0 33.0 108.0 37.0 457.0 1840.0 0 g 0 0 0 0 1494.0 2142.0 474.0 29.0 213.0 10582.0 1351.0 46.0 879.0 51.0 755.0 2504.0 0 t 0 0 0 0 2075.0 5231.0 10582.0 43.0 10582.0 1326.0 3375.0 3651.0 787.0 158.0 10582.0 4262.0 0

MA0784.1_shift4 (POU1F1)
; oligos_7nt_mkv4_m3 versus MA0784.1 (POU1F1); m=8/77; ncol2=14; w=12; offset=-1; strand=D; shift=4; score=0.784479; ----awTATGCwAATkA ; cor=; Ncor= a 0 0 0 0 1211.0 1128.0 276.0 2128.0 45.0 28.0 98.0 1267.0 2128.0 2128.0 76.0 222.0 2128.0 c 0 0 0 0 247.0 123.0 83.0 14.0 74.0 11.0 2128.0 12.0 11.0 10.0 37.0 241.0 174.0 g 0 0 0 0 273.0 187.0 108.0 32.0 26.0 2128.0 164.0 7.0 82.0 0.0 40.0 840.0 194.0 t 0 0 0 0 397.0 1000.0 2128.0 19.0 2128.0 176.0 536.0 861.0 85.0 3.0 2128.0 1287.0 273.0

MA0789.1_shift6 (POU3F4)
; oligos_7nt_mkv4_m3 versus MA0789.1 (POU3F4); m=9/77; ncol2=9; w=9; offset=1; strand=D; shift=6; score=0.71138; ------TATGCwAAT-- ; cor=; Ncor= a 0 0 0 0 0 0 941.0 11117.0 59.0 53.0 136.0 6447.0 11117.0 11117.0 705.0 0 0 c 0 0 0 0 0 0 349.0 23.0 59.0 19.0 11117.0 10.0 332.0 47.0 247.0 0 0 g 0 0 0 0 0 0 136.0 68.0 24.0 11117.0 602.0 56.0 315.0 88.0 292.0 0 0 t 0 0 0 0 0 0 11117.0 26.0 11117.0 245.0 2565.0 4670.0 885.0 168.0 11117.0 0 0

MA0792.1_shift6 (POU5F1B)
; oligos_7nt_mkv4_m3 versus MA0792.1 (POU5F1B); m=10/77; ncol2=9; w=9; offset=1; strand=D; shift=6; score=0.704504; ------TATGywAAT-- ; cor=; Ncor= a 0 0 0 0 0 0 1326.0 9519.0 171.0 322.0 398.0 6299.0 9519.0 9519.0 1559.0 0 0 c 0 0 0 0 0 0 1778.0 21.0 364.0 94.0 9519.0 51.0 144.0 65.0 537.0 0 0 g 0 0 0 0 0 0 808.0 67.0 206.0 9519.0 1293.0 65.0 856.0 97.0 750.0 0 0 t 0 0 0 0 0 0 9519.0 84.0 9519.0 1790.0 3828.0 3220.0 896.0 203.0 9519.0 0 0

MA0142.1_shift0 (Pou5f1::Sox2)
; oligos_7nt_mkv4_m3 versus MA0142.1 (Pou5f1::Sox2); m=11/77; ncol2=15; w=10; offset=-5; strand=D; shift=0; score=0.534407; ywTTswyATGCAaAt-- ; cor=; Ncor= a 63.0 579.0 11.0 47.0 118.0 415.0 206.0 1235.0 17.0 10.0 14.0 1050.0 887.0 1200.0 198.0 0 0 c 846.0 58.0 50.0 12.0 363.0 18.0 365.0 30.0 5.0 16.0 1029.0 16.0 68.0 33.0 119.0 0 0 g 66.0 28.0 36.0 79.0 825.0 29.0 186.0 24.0 15.0 1239.0 129.0 30.0 315.0 75.0 207.0 0 0 t 389.0 701.0 1270.0 1231.0 63.0 907.0 612.0 80.0 1332.0 104.0 196.0 269.0 92.0 53.0 837.0 0 0

MA0912.2_shift10 (HOXD3)
; oligos_7nt_mkv4_m3 versus MA0912.2 (HOXD3); m=12/77; ncol2=8; w=7; offset=5; strand=D; shift=10; score=0.459859; ----------CTAATTA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 276.0 0.0 14562.0 14562.0 0.0 0.0 14562.0 c 0 0 0 0 0 0 0 0 0 0 11615.0 94.0 742.0 0.0 0.0 0.0 0.0 g 0 0 0 0 0 0 0 0 0 0 827.0 0.0 0.0 0.0 0.0 4453.0 2198.0 t 0 0 0 0 0 0 0 0 0 0 2947.0 14562.0 0.0 0.0 14562.0 14562.0 0.0

MA0893.2_rc_shift10 (GSX2_rc)
; oligos_7nt_mkv4_m3 versus MA0893.2_rc (GSX2_rc); m=13/77; ncol2=8; w=7; offset=5; strand=R; shift=10; score=0.459358; ----------yTAATkr ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 918.0 20.0 4998.0 4998.0 0.0 29.0 4998.0 c 0 0 0 0 0 0 0 0 0 0 2840.0 1005.0 77.0 0.0 708.0 95.0 400.0 g 0 0 0 0 0 0 0 0 0 0 659.0 0.0 0.0 121.0 0.0 2223.0 2611.0 t 0 0 0 0 0 0 0 0 0 0 2158.0 4998.0 0.0 0.0 4998.0 2775.0 503.0

MA0132.2_rc_shift10 (PDX1_rc)
; oligos_7nt_mkv4_m3 versus MA0132.2_rc (PDX1_rc); m=14/77; ncol2=8; w=7; offset=5; strand=R; shift=10; score=0.451209; ----------yTAATkr ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 852.0 0.0 7130.0 7130.0 0.0 78.0 4661.0 c 0 0 0 0 0 0 0 0 0 0 2881.0 0.0 0.0 0.0 0.0 185.0 0.0 g 0 0 0 0 0 0 0 0 0 0 1216.0 0.0 0.0 0.0 45.0 2291.0 2469.0 t 0 0 0 0 0 0 0 0 0 0 2181.0 7130.0 0.0 0.0 7130.0 4839.0 292.0

MA0887.1_rc_shift9 (EVX1_rc)
; oligos_7nt_mkv4_m3 versus MA0887.1_rc (EVX1_rc); m=15/77; ncol2=10; w=8; offset=4; strand=R; shift=9; score=0.45048; ---------gsTAATta ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 1186.0 1743.0 172.0 7894.0 7894.0 0.0 358.0 7894.0 c 0 0 0 0 0 0 0 0 0 1958.0 2720.0 725.0 171.0 267.0 236.0 1885.0 269.0 g 0 0 0 0 0 0 0 0 0 3318.0 2098.0 14.0 463.0 67.0 29.0 1752.0 2343.0 t 0 0 0 0 0 0 0 0 0 1432.0 1333.0 7894.0 232.0 0.0 7894.0 3899.0 1196.0

MA0888.1_rc_shift9 (EVX2_rc)
; oligos_7nt_mkv4_m3 versus MA0888.1_rc (EVX2_rc); m=16/77; ncol2=10; w=8; offset=4; strand=R; shift=9; score=0.449117; ---------gcTAATtA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 3930.0 3682.0 446.0 20419.0 20419.0 0.0 752.0 20419.0 c 0 0 0 0 0 0 0 0 0 4997.0 7789.0 1559.0 445.0 702.0 881.0 4541.0 969.0 g 0 0 0 0 0 0 0 0 0 7715.0 4858.0 0.0 863.0 166.0 156.0 5018.0 5669.0 t 0 0 0 0 0 0 0 0 0 3778.0 4090.0 20419.0 303.0 5.0 20419.0 10108.0 2541.0

MA0875.1_rc_shift10 (BARX1_rc)
; oligos_7nt_mkv4_m3 versus MA0875.1_rc (BARX1_rc); m=17/77; ncol2=8; w=7; offset=5; strand=R; shift=10; score=0.447639; ----------yTAATkg ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 1077.0 0.0 6805.0 6805.0 0.0 87.0 1667.0 c 0 0 0 0 0 0 0 0 0 0 2420.0 0.0 0.0 0.0 192.0 1386.0 246.0 g 0 0 0 0 0 0 0 0 0 0 1391.0 0.0 0.0 0.0 207.0 1992.0 5138.0 t 0 0 0 0 0 0 0 0 0 0 1917.0 6805.0 0.0 0.0 6805.0 3339.0 590.0

MA0068.2_shift10 (PAX4)
; oligos_7nt_mkv4_m3 versus MA0068.2 (PAX4); m=18/77; ncol2=8; w=7; offset=5; strand=D; shift=10; score=0.446301; ----------ctAATTA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 37.0 58.0 333.0 333.0 0.0 18.0 333.0 c 0 0 0 0 0 0 0 0 0 0 333.0 30.0 2.0 0.0 0.0 11.0 89.0 g 0 0 0 0 0 0 0 0 0 0 47.0 120.0 0.0 0.0 5.0 10.0 11.0 t 0 0 0 0 0 0 0 0 0 0 105.0 333.0 3.0 0.0 333.0 333.0 12.0

MA0725.1_shift10 (VSX1)
; oligos_7nt_mkv4_m3 versus MA0725.1 (VSX1); m=19/77; ncol2=8; w=7; offset=5; strand=D; shift=10; score=0.444657; ----------yTAATTA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 756.0 1836.0 13572.0 13572.0 172.0 898.0 13572.0 c 0 0 0 0 0 0 0 0 0 0 8453.0 3131.0 626.0 154.0 199.0 761.0 516.0 g 0 0 0 0 0 0 0 0 0 0 561.0 572.0 553.0 172.0 103.0 984.0 3337.0 t 0 0 0 0 0 0 0 0 0 0 5119.0 13572.0 554.0 90.0 13572.0 13572.0 1372.0

MA1499.1_rc_shift10 (HOXB4_rc)
; oligos_7nt_mkv4_m3 versus MA1499.1_rc (HOXB4_rc); m=20/77; ncol2=8; w=7; offset=5; strand=R; shift=10; score=0.443783; ----------yTAATkA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 1388.0 0.0 9080.0 9080.0 0.0 0.0 9080.0 c 0 0 0 0 0 0 0 0 0 0 4683.0 55.0 271.0 0.0 265.0 0.0 0.0 g 0 0 0 0 0 0 0 0 0 0 1409.0 0.0 0.0 0.0 0.0 5459.0 2103.0 t 0 0 0 0 0 0 0 0 0 0 4397.0 9080.0 0.0 0.0 9080.0 3621.0 0.0

MA0723.1_shift10 (VAX2)
; oligos_7nt_mkv4_m3 versus MA0723.1 (VAX2); m=21/77; ncol2=8; w=7; offset=5; strand=D; shift=10; score=0.44374; ----------yTAATkA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 921.0 1410.0 14297.0 14297.0 576.0 1341.0 14297.0 c 0 0 0 0 0 0 0 0 0 0 7816.0 2823.0 2781.0 213.0 161.0 987.0 179.0 g 0 0 0 0 0 0 0 0 0 0 1384.0 221.0 414.0 94.0 564.0 5673.0 3818.0 t 0 0 0 0 0 0 0 0 0 0 6482.0 14297.0 565.0 218.0 14297.0 14297.0 562.0

MA0903.1_rc_shift9 (HOXB3_rc)
; oligos_7nt_mkv4_m3 versus MA0903.1_rc (HOXB3_rc); m=22/77; ncol2=10; w=8; offset=4; strand=R; shift=9; score=0.443174; ---------gyTAATkr ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 2724.0 1506.0 574.0 12899.0 12899.0 242.0 697.0 7920.0 c 0 0 0 0 0 0 0 0 0 2981.0 4732.0 0.0 0.0 0.0 640.0 838.0 604.0 g 0 0 0 0 0 0 0 0 0 3995.0 2119.0 119.0 839.0 150.0 545.0 5106.0 4979.0 t 0 0 0 0 0 0 0 0 0 3199.0 4542.0 12899.0 441.0 0.0 12899.0 7793.0 1744.0

MA1507.1_rc_shift10 (HOXD4_rc)
; oligos_7nt_mkv4_m3 versus MA1507.1_rc (HOXD4_rc); m=23/77; ncol2=8; w=7; offset=5; strand=R; shift=10; score=0.442394; ----------yTAATkR ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 631.0 0.0 3405.0 3405.0 0.0 0.0 3405.0 c 0 0 0 0 0 0 0 0 0 0 1147.0 194.0 0.0 0.0 176.0 0.0 0.0 g 0 0 0 0 0 0 0 0 0 0 525.0 0.0 0.0 0.0 0.0 1862.0 1184.0 t 0 0 0 0 0 0 0 0 0 0 1102.0 3405.0 0.0 0.0 3405.0 1542.0 0.0

MA0726.1_shift10 (VSX2)
; oligos_7nt_mkv4_m3 versus MA0726.1 (VSX2); m=24/77; ncol2=8; w=7; offset=5; strand=D; shift=10; score=0.442203; ----------yTAATTA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 427.0 1080.0 13809.0 13809.0 118.0 626.0 13809.0 c 0 0 0 0 0 0 0 0 0 0 9554.0 2725.0 397.0 124.0 186.0 567.0 321.0 g 0 0 0 0 0 0 0 0 0 0 445.0 363.0 343.0 123.0 92.0 447.0 2109.0 t 0 0 0 0 0 0 0 0 0 0 4255.0 13809.0 402.0 63.0 13809.0 13809.0 1014.0

MA0722.1_shift10 (VAX1)
; oligos_7nt_mkv4_m3 versus MA0722.1 (VAX1); m=25/77; ncol2=8; w=7; offset=5; strand=D; shift=10; score=0.442165; ----------yTAATtA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 447.0 679.0 5253.0 5253.0 297.0 508.0 5253.0 c 0 0 0 0 0 0 0 0 0 0 2775.0 995.0 863.0 153.0 86.0 321.0 87.0 g 0 0 0 0 0 0 0 0 0 0 455.0 101.0 189.0 46.0 213.0 1951.0 1332.0 t 0 0 0 0 0 0 0 0 0 0 2479.0 5253.0 302.0 133.0 5253.0 5253.0 398.0

MA0902.2_rc_shift10 (HOXB2_rc)
; oligos_7nt_mkv4_m3 versus MA0902.2_rc (HOXB2_rc); m=26/77; ncol2=8; w=7; offset=5; strand=R; shift=10; score=0.441492; ----------sTAATkr ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 589.0 0.0 6827.0 6827.0 0.0 0.0 3993.0 c 0 0 0 0 0 0 0 0 0 0 2933.0 0.0 1876.0 0.0 0.0 199.0 0.0 g 0 0 0 0 0 0 0 0 0 0 2031.0 0.0 0.0 0.0 0.0 3276.0 2834.0 t 0 0 0 0 0 0 0 0 0 0 1273.0 6827.0 0.0 0.0 6827.0 6827.0 51.0

MA0710.1_rc_shift9 (NOTO_rc)
; oligos_7nt_mkv4_m3 versus MA0710.1_rc (NOTO_rc); m=27/77; ncol2=10; w=8; offset=4; strand=R; shift=9; score=0.440906; ---------syTAATKa ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 4124.0 2832.0 1904.0 21405.0 21405.0 0.0 139.0 21405.0 c 0 0 0 0 0 0 0 0 0 5493.0 7679.0 2057.0 422.0 0.0 0.0 0.0 573.0 g 0 0 0 0 0 0 0 0 0 7711.0 3856.0 0.0 62.0 0.0 0.0 6310.0 4001.0 t 0 0 0 0 0 0 0 0 0 4078.0 7038.0 21405.0 374.0 0.0 21405.0 15096.0 7097.0

MA1504.1_rc_shift10 (HOXC4_rc)
; oligos_7nt_mkv4_m3 versus MA1504.1_rc (HOXC4_rc); m=28/77; ncol2=8; w=7; offset=5; strand=R; shift=10; score=0.439926; ----------yTAATkR ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 1592.0 0.0 8759.0 8759.0 0.0 0.0 8759.0 c 0 0 0 0 0 0 0 0 0 0 2713.0 825.0 0.0 0.0 583.0 0.0 0.0 g 0 0 0 0 0 0 0 0 0 0 1679.0 0.0 0.0 0.0 0.0 5152.0 3111.0 t 0 0 0 0 0 0 0 0 0 0 2776.0 8759.0 0.0 0.0 8759.0 3607.0 188.0

MA0876.1_rc_shift10 (BSX_rc)
; oligos_7nt_mkv4_m3 versus MA0876.1_rc (BSX_rc); m=29/77; ncol2=8; w=7; offset=5; strand=R; shift=10; score=0.436911; ----------bTAATkr ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 1276.0 0.0 8832.0 8832.0 66.0 116.0 3247.0 c 0 0 0 0 0 0 0 0 0 0 2417.0 0.0 0.0 0.0 1078.0 2197.0 103.0 g 0 0 0 0 0 0 0 0 0 0 2369.0 0.0 0.0 0.0 194.0 2483.0 5585.0 t 0 0 0 0 0 0 0 0 0 0 2770.0 8832.0 96.0 0.0 8832.0 4036.0 688.0

MA1496.1_rc_shift10 (HOXA4_rc)
; oligos_7nt_mkv4_m3 versus MA1496.1_rc (HOXA4_rc); m=30/77; ncol2=8; w=7; offset=5; strand=R; shift=10; score=0.434358; ----------yTAATkR ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 385.0 0.0 2454.0 2454.0 0.0 0.0 2454.0 c 0 0 0 0 0 0 0 0 0 0 840.0 260.0 171.0 39.0 684.0 176.0 0.0 g 0 0 0 0 0 0 0 0 0 0 593.0 146.0 173.0 0.0 0.0 1561.0 967.0 t 0 0 0 0 0 0 0 0 0 0 636.0 2454.0 0.0 0.0 2454.0 893.0 0.0

MA0630.1_shift10 (SHOX)
; oligos_7nt_mkv4_m3 versus MA0630.1 (SHOX); m=31/77; ncol2=8; w=7; offset=5; strand=D; shift=10; score=0.43186; ----------yTAATTr ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 179.0 74.0 852.0 991.0 15.0 98.0 416.0 c 0 0 0 0 0 0 0 0 0 0 301.0 30.0 48.0 2.0 15.0 50.0 48.0 g 0 0 0 0 0 0 0 0 0 0 162.0 9.0 55.0 5.0 27.0 84.0 424.0 t 0 0 0 0 0 0 0 0 0 0 357.0 886.0 45.0 2.0 943.0 768.0 111.0

MA0612.2_rc_shift10 (EMX1_rc)
; oligos_7nt_mkv4_m3 versus MA0612.2_rc (EMX1_rc); m=32/77; ncol2=8; w=7; offset=5; strand=R; shift=10; score=0.42935; ----------sTAATTA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 1062.0 0.0 9544.0 9544.0 0.0 0.0 7281.0 c 0 0 0 0 0 0 0 0 0 0 4516.0 0.0 933.0 0.0 0.0 0.0 0.0 g 0 0 0 0 0 0 0 0 0 0 2633.0 0.0 0.0 0.0 0.0 1235.0 2263.0 t 0 0 0 0 0 0 0 0 0 0 1333.0 9544.0 0.0 0.0 9544.0 9544.0 19.0

MA1577.1_rc_shift10 (TLX2_rc)
; oligos_7nt_mkv4_m3 versus MA1577.1_rc (TLX2_rc); m=33/77; ncol2=8; w=7; offset=5; strand=R; shift=10; score=0.428749; ----------yTAATTr ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 852.0 0.0 7799.0 7799.0 0.0 0.0 8156.0 c 0 0 0 0 0 0 0 0 0 0 3439.0 0.0 0.0 0.0 0.0 80.0 1112.0 g 0 0 0 0 0 0 0 0 0 0 1323.0 0.0 0.0 0.0 0.0 0.0 7799.0 t 0 0 0 0 0 0 0 0 0 0 2184.0 7799.0 0.0 0.0 7799.0 7799.0 1435.0

MA0900.2_rc_shift10 (HOXA2_rc)
; oligos_7nt_mkv4_m3 versus MA0900.2_rc (HOXA2_rc); m=34/77; ncol2=8; w=7; offset=5; strand=R; shift=10; score=0.42761; ----------sTAATKA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 7731.0 0.0 56949.0 56949.0 0.0 0.0 56949.0 c 0 0 0 0 0 0 0 0 0 0 22246.0 2052.0 0.0 0.0 0.0 290.0 0.0 g 0 0 0 0 0 0 0 0 0 0 16330.0 0.0 0.0 0.0 0.0 17275.0 3636.0 t 0 0 0 0 0 0 0 0 0 0 10641.0 56949.0 0.0 0.0 56949.0 39674.0 0.0

MA0889.1_rc_shift9 (GBX1_rc)
; oligos_7nt_mkv4_m3 versus MA0889.1_rc (GBX1_rc); m=35/77; ncol2=10; w=8; offset=4; strand=R; shift=9; score=0.427561; ---------gcTAATTr ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 6655.0 3039.0 321.0 27339.0 27339.0 23.0 157.0 13796.0 c 0 0 0 0 0 0 0 0 0 5441.0 12203.0 8.0 246.0 1.0 29.0 758.0 15.0 g 0 0 0 0 0 0 0 0 0 11717.0 6377.0 50.0 438.0 128.0 172.0 589.0 13543.0 t 0 0 0 0 0 0 0 0 0 3526.0 5720.0 27339.0 312.0 45.0 27339.0 27339.0 243.0

MA0717.1_rc_shift10 (RAX2_rc)
; oligos_7nt_mkv4_m3 versus MA0717.1_rc (RAX2_rc); m=36/77; ncol2=8; w=7; offset=5; strand=R; shift=10; score=0.426071; ----------yTAATTr ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 5601.0 4258.0 38860.0 38860.0 1030.0 2421.0 19215.0 c 0 0 0 0 0 0 0 0 0 0 12362.0 360.0 2513.0 125.0 757.0 4490.0 1688.0 g 0 0 0 0 0 0 0 0 0 0 7487.0 2644.0 4232.0 738.0 1523.0 3060.0 19645.0 t 0 0 0 0 0 0 0 0 0 0 13411.0 38860.0 2167.0 270.0 38860.0 38860.0 3558.0

MA0705.1_shift10 (Lhx8)
; oligos_7nt_mkv4_m3 versus MA0705.1 (Lhx8); m=37/77; ncol2=8; w=7; offset=5; strand=D; shift=10; score=0.425818; ----------cYAATYR ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 472.0 0.0 5092.0 5092.0 0.0 0.0 5092.0 c 0 0 0 0 0 0 0 0 0 0 2588.0 1996.0 160.0 0.0 0.0 2083.0 0.0 g 0 0 0 0 0 0 0 0 0 0 925.0 0.0 1670.0 0.0 0.0 88.0 1929.0 t 0 0 0 0 0 0 0 0 0 0 1108.0 5092.0 0.0 0.0 5092.0 5092.0 0.0

MA0158.2_rc_shift10 (HOXA5_rc)
; oligos_7nt_mkv4_m3 versus MA0158.2_rc (HOXA5_rc); m=38/77; ncol2=8; w=7; offset=5; strand=R; shift=10; score=0.424914; ----------sTAATkr ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 54.0 0.0 3130.0 3130.0 0.0 0.0 2078.0 c 0 0 0 0 0 0 0 0 0 0 1133.0 0.0 885.0 0.0 0.0 81.0 0.0 g 0 0 0 0 0 0 0 0 0 0 1463.0 0.0 0.0 0.0 0.0 1632.0 1052.0 t 0 0 0 0 0 0 0 0 0 0 480.0 3130.0 0.0 0.0 3130.0 3130.0 0.0

MA1500.1_shift10 (HOXB6)
; oligos_7nt_mkv4_m3 versus MA1500.1 (HOXB6); m=39/77; ncol2=8; w=7; offset=5; strand=D; shift=10; score=0.423622; ----------tTAATkr ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 1357.0 0.0 6192.0 6192.0 0.0 403.0 3128.0 c 0 0 0 0 0 0 0 0 0 0 2468.0 710.0 647.0 0.0 436.0 926.0 0.0 g 0 0 0 0 0 0 0 0 0 0 2395.0 0.0 0.0 0.0 727.0 4139.0 3064.0 t 0 0 0 0 0 0 0 0 0 0 3724.0 6192.0 564.0 0.0 6192.0 6192.0 0.0

MA0886.1_rc_shift9 (EMX2_rc)
; oligos_7nt_mkv4_m3 versus MA0886.1_rc (EMX2_rc); m=40/77; ncol2=10; w=8; offset=4; strand=R; shift=9; score=0.423002; ---------scTAATTA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 8043.0 3328.0 0.0 37262.0 37262.0 0.0 1236.0 29501.0 c 0 0 0 0 0 0 0 0 0 10195.0 17672.0 0.0 4025.0 0.0 0.0 678.0 0.0 g 0 0 0 0 0 0 0 0 0 13054.0 7124.0 0.0 0.0 0.0 0.0 4938.0 7761.0 t 0 0 0 0 0 0 0 0 0 5970.0 9139.0 37262.0 0.0 0.0 37262.0 37262.0 834.0

MA0642.1_rc_shift9 (EN2_rc)
; oligos_7nt_mkv4_m3 versus MA0642.1_rc (EN2_rc); m=41/77; ncol2=10; w=8; offset=4; strand=R; shift=9; score=0.422693; ---------ssTAATTr ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 283.0 177.0 0.0 1648.0 1648.0 0.0 53.0 624.0 c 0 0 0 0 0 0 0 0 0 476.0 630.0 45.0 203.0 0.0 7.0 164.0 35.0 g 0 0 0 0 0 0 0 0 0 708.0 491.0 0.0 420.0 0.0 105.0 297.0 1024.0 t 0 0 0 0 0 0 0 0 0 181.0 350.0 1648.0 0.0 0.0 1648.0 1648.0 10.0

MA1501.1_rc_shift9 (HOXB7_rc)
; oligos_7nt_mkv4_m3 versus MA1501.1_rc (HOXB7_rc); m=42/77; ncol2=10; w=8; offset=4; strand=R; shift=9; score=0.420897; ---------syTAATTr ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 92.0 71.0 0.0 828.0 828.0 0.0 0.0 828.0 c 0 0 0 0 0 0 0 0 0 250.0 268.0 151.0 0.0 31.0 0.0 0.0 51.0 g 0 0 0 0 0 0 0 0 0 354.0 165.0 0.0 3.0 0.0 29.0 222.0 359.0 t 0 0 0 0 0 0 0 0 0 132.0 324.0 828.0 79.0 0.0 828.0 828.0 0.0

MA1518.1_rc_shift10 (LHX1_rc)
; oligos_7nt_mkv4_m3 versus MA1518.1_rc (LHX1_rc); m=43/77; ncol2=8; w=7; offset=5; strand=R; shift=10; score=0.420835; ----------sTaATtr ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 2986.0 2105.0 14954.0 14954.0 569.0 2084.0 5724.0 c 0 0 0 0 0 0 0 0 0 0 3908.0 617.0 3100.0 0.0 39.0 4035.0 572.0 g 0 0 0 0 0 0 0 0 0 0 5037.0 495.0 5413.0 0.0 270.0 4878.0 9230.0 t 0 0 0 0 0 0 0 0 0 0 3023.0 14954.0 1101.0 0.0 14954.0 14954.0 949.0

MA0721.1_rc_shift10 (UNCX_rc)
; oligos_7nt_mkv4_m3 versus MA0721.1_rc (UNCX_rc); m=44/77; ncol2=8; w=7; offset=5; strand=R; shift=10; score=0.420672; ----------yTAATTr ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 4810.0 3885.0 36926.0 36926.0 890.0 2629.0 20126.0 c 0 0 0 0 0 0 0 0 0 0 10480.0 731.0 1782.0 117.0 420.0 4582.0 2086.0 g 0 0 0 0 0 0 0 0 0 0 7825.0 2211.0 3958.0 806.0 1302.0 2540.0 16800.0 t 0 0 0 0 0 0 0 0 0 0 13811.0 36926.0 3111.0 481.0 36926.0 36926.0 3975.0

MA1498.1_rc_shift10 (HOXA7_rc)
; oligos_7nt_mkv4_m3 versus MA1498.1_rc (HOXA7_rc); m=45/77; ncol2=8; w=7; offset=5; strand=R; shift=10; score=0.420504; ----------gTAATkr ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 702.0 0.0 4227.0 4227.0 148.0 226.0 1908.0 c 0 0 0 0 0 0 0 0 0 0 977.0 0.0 815.0 0.0 25.0 417.0 9.0 g 0 0 0 0 0 0 0 0 0 0 1720.0 0.0 0.0 0.0 83.0 3335.0 2319.0 t 0 0 0 0 0 0 0 0 0 0 828.0 4227.0 159.0 0.0 4227.0 4227.0 0.0

MA0720.1_rc_shift10 (Shox2_rc)
; oligos_7nt_mkv4_m3 versus MA0720.1_rc (Shox2_rc); m=46/77; ncol2=8; w=7; offset=5; strand=R; shift=10; score=0.420332; ----------yTAATTr ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 2278.0 895.0 18179.0 18179.0 79.0 766.0 9152.0 c 0 0 0 0 0 0 0 0 0 0 6337.0 36.0 870.0 0.0 3.0 426.0 228.0 g 0 0 0 0 0 0 0 0 0 0 3021.0 193.0 545.0 12.0 138.0 626.0 9027.0 t 0 0 0 0 0 0 0 0 0 0 6542.0 18179.0 597.0 29.0 18179.0 18179.0 979.0

MA0027.2_rc_shift10 (EN1_rc)
; oligos_7nt_mkv4_m3 versus MA0027.2_rc (EN1_rc); m=47/77; ncol2=8; w=7; offset=5; strand=R; shift=10; score=0.419785; ----------cTAATTr ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 302.0 132.0 2891.0 2891.0 0.0 0.0 1562.0 c 0 0 0 0 0 0 0 0 0 0 1216.0 30.0 162.0 0.0 0.0 71.0 5.0 g 0 0 0 0 0 0 0 0 0 0 683.0 0.0 483.0 0.0 28.0 99.0 1328.0 t 0 0 0 0 0 0 0 0 0 0 689.0 2891.0 57.0 0.0 2891.0 2891.0 104.0

MA0701.2_shift10 (LHX9)
; oligos_7nt_mkv4_m3 versus MA0701.2 (LHX9); m=48/77; ncol2=8; w=7; offset=5; strand=D; shift=10; score=0.417902; ----------CyAATTA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 390.0 0.0 6075.0 6075.0 0.0 0.0 6075.0 c 0 0 0 0 0 0 0 0 0 0 6075.0 2093.0 505.0 0.0 0.0 0.0 0.0 g 0 0 0 0 0 0 0 0 0 0 1056.0 0.0 0.0 0.0 0.0 170.0 305.0 t 0 0 0 0 0 0 0 0 0 0 1219.0 3983.0 20.0 0.0 6075.0 6075.0 0.0

MA0704.1_rc_shift10 (Lhx4_rc)
; oligos_7nt_mkv4_m3 versus MA0704.1_rc (Lhx4_rc); m=49/77; ncol2=8; w=7; offset=5; strand=R; shift=10; score=0.416748; ----------yTAATTA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 275.0 135.0 2896.0 2896.0 155.0 255.0 2896.0 c 0 0 0 0 0 0 0 0 0 0 857.0 316.0 57.0 0.0 0.0 309.0 0.0 g 0 0 0 0 0 0 0 0 0 0 449.0 39.0 446.0 0.0 0.0 428.0 912.0 t 0 0 0 0 0 0 0 0 0 0 1314.0 2896.0 0.0 0.0 2896.0 2896.0 217.0

MA0644.1_rc_shift9 (ESX1_rc)
; oligos_7nt_mkv4_m3 versus MA0644.1_rc (ESX1_rc); m=50/77; ncol2=10; w=8; offset=4; strand=R; shift=9; score=0.416308; ---------gyTAATTr ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 7223.0 5689.0 2501.0 35623.0 35623.0 1089.0 2400.0 17642.0 c 0 0 0 0 0 0 0 0 0 6231.0 10210.0 449.0 1274.0 4.0 867.0 3416.0 472.0 g 0 0 0 0 0 0 0 0 0 14583.0 7659.0 477.0 4545.0 995.0 2440.0 3018.0 17981.0 t 0 0 0 0 0 0 0 0 0 7586.0 12065.0 35623.0 3721.0 756.0 35623.0 35623.0 2884.0

MA1481.1_rc_shift10 (DRGX_rc)
; oligos_7nt_mkv4_m3 versus MA1481.1_rc (DRGX_rc); m=51/77; ncol2=8; w=7; offset=5; strand=R; shift=10; score=0.416261; ----------sTAATTr ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 3105.0 144.0 14867.0 14867.0 0.0 0.0 8870.0 c 0 0 0 0 0 0 0 0 0 0 3995.0 962.0 209.0 0.0 0.0 2037.0 1111.0 g 0 0 0 0 0 0 0 0 0 0 4651.0 17.0 813.0 0.0 0.0 501.0 5997.0 t 0 0 0 0 0 0 0 0 0 0 3117.0 14867.0 0.0 0.0 14867.0 14867.0 1079.0

MA0879.1_rc_shift9 (Dlx1_rc)
; oligos_7nt_mkv4_m3 versus MA0879.1_rc (Dlx1_rc); m=52/77; ncol2=10; w=8; offset=4; strand=R; shift=9; score=0.416228; ---------gmTAATTr ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 1648.0 2536.0 1910.0 8281.0 8281.0 535.0 347.0 5528.0 c 0 0 0 0 0 0 0 0 0 1893.0 2077.0 36.0 511.0 49.0 42.0 416.0 149.0 g 0 0 0 0 0 0 0 0 0 3126.0 1894.0 103.0 359.0 41.0 105.0 861.0 2753.0 t 0 0 0 0 0 0 0 0 0 1613.0 1774.0 8281.0 157.0 1002.0 8281.0 8281.0 2295.0

MA0724.1_rc_shift10 (VENTX_rc)
; oligos_7nt_mkv4_m3 versus MA0724.1_rc (VENTX_rc); m=53/77; ncol2=9; w=7; offset=5; strand=R; shift=10; score=0.415319; ----------yTAATyG ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 2189.0 0.0 23923.0 23923.0 74.0 626.0 3964.0 c 0 0 0 0 0 0 0 0 0 0 15103.0 0.0 0.0 0.0 0.0 16128.0 0.0 g 0 0 0 0 0 0 0 0 0 0 706.0 0.0 0.0 0.0 203.0 5650.0 23923.0 t 0 0 0 0 0 0 0 0 0 0 8820.0 23923.0 0.0 0.0 23923.0 7795.0 562.0

MA0894.1_shift9 (HESX1)
; oligos_7nt_mkv4_m3 versus MA0894.1 (HESX1); m=54/77; ncol2=10; w=8; offset=4; strand=D; shift=9; score=0.41497; ---------gyTAATTr ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 831.0 879.0 187.0 4072.0 4072.0 0.0 0.0 1892.0 c 0 0 0 0 0 0 0 0 0 753.0 1432.0 0.0 0.0 7.0 0.0 15.0 38.0 g 0 0 0 0 0 0 0 0 0 1743.0 447.0 34.0 53.0 9.0 15.0 0.0 2180.0 t 0 0 0 0 0 0 0 0 0 744.0 1313.0 4072.0 31.0 0.0 4072.0 4072.0 97.0

MA0075.3_shift10 (PRRX2)
; oligos_7nt_mkv4_m3 versus MA0075.3 (PRRX2); m=55/77; ncol2=8; w=7; offset=5; strand=D; shift=10; score=0.414728; ----------cyAATTA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 778.0 122.0 6720.0 6720.0 0.0 0.0 6720.0 c 0 0 0 0 0 0 0 0 0 0 6720.0 2008.0 29.0 0.0 0.0 0.0 1.0 g 0 0 0 0 0 0 0 0 0 0 1613.0 131.0 3.0 0.0 0.0 0.0 399.0 t 0 0 0 0 0 0 0 0 0 0 1933.0 4711.0 0.0 0.0 6720.0 6720.0 0.0

MA0699.1_rc_shift9 (LBX2_rc)
; oligos_7nt_mkv4_m3 versus MA0699.1_rc (LBX2_rc); m=56/77; ncol2=10; w=8; offset=4; strand=R; shift=9; score=0.413764; ---------gyTAATTr ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 560.0 438.0 148.0 2996.0 2996.0 89.0 57.0 1362.0 c 0 0 0 0 0 0 0 0 0 737.0 1135.0 106.0 293.0 118.0 130.0 325.0 109.0 g 0 0 0 0 0 0 0 0 0 977.0 434.0 34.0 258.0 29.0 290.0 338.0 1634.0 t 0 0 0 0 0 0 0 0 0 722.0 990.0 2996.0 150.0 0.0 2996.0 2996.0 157.0

MA1502.1_rc_shift10 (HOXB8_rc)
; oligos_7nt_mkv4_m3 versus MA1502.1_rc (HOXB8_rc); m=57/77; ncol2=8; w=7; offset=5; strand=R; shift=10; score=0.41363; ----------kTAATkr ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 766.0 0.0 4474.0 4474.0 0.0 0.0 1914.0 c 0 0 0 0 0 0 0 0 0 0 830.0 0.0 542.0 0.0 0.0 89.0 0.0 g 0 0 0 0 0 0 0 0 0 0 1704.0 0.0 0.0 0.0 0.0 3374.0 2560.0 t 0 0 0 0 0 0 0 0 0 0 1174.0 4474.0 284.0 0.0 4474.0 4474.0 0.0

MA0654.1_rc_shift10 (ISX_rc)
; oligos_7nt_mkv4_m3 versus MA0654.1_rc (ISX_rc); m=58/77; ncol2=8; w=7; offset=5; strand=R; shift=10; score=0.413411; ----------yTAATTr ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 283.0 49.0 2065.0 2065.0 10.0 24.0 1061.0 c 0 0 0 0 0 0 0 0 0 0 704.0 0.0 24.0 0.0 0.0 5.0 0.0 g 0 0 0 0 0 0 0 0 0 0 307.0 0.0 0.0 0.0 16.0 48.0 1003.0 t 0 0 0 0 0 0 0 0 0 0 770.0 2065.0 0.0 0.0 2065.0 2065.0 10.0

MA1463.1_shift9 (ARGFX)
; oligos_7nt_mkv4_m3 versus MA1463.1 (ARGFX); m=59/77; ncol2=10; w=8; offset=4; strand=D; shift=9; score=0.412547; ---------kcTAATTA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 3893.0 2558.0 270.0 16589.0 16589.0 0.0 0.0 16589.0 c 0 0 0 0 0 0 0 0 0 1750.0 16589.0 1130.0 46.0 0.0 0.0 44.0 499.0 g 0 0 0 0 0 0 0 0 0 4467.0 1748.0 96.0 0.0 0.0 0.0 0.0 1492.0 t 0 0 0 0 0 0 0 0 0 6479.0 4423.0 16589.0 4.0 0.0 16589.0 16589.0 1048.0

MA0716.1_rc_shift10 (PRRX1_rc)
; oligos_7nt_mkv4_m3 versus MA0716.1_rc (PRRX1_rc); m=60/77; ncol2=8; w=7; offset=5; strand=R; shift=10; score=0.411685; ----------yTAATTr ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 3765.0 1229.0 23897.0 23897.0 209.0 810.0 12775.0 c 0 0 0 0 0 0 0 0 0 0 6366.0 136.0 1004.0 0.0 202.0 1776.0 1121.0 g 0 0 0 0 0 0 0 0 0 0 4269.0 644.0 2302.0 3.0 503.0 1088.0 11122.0 t 0 0 0 0 0 0 0 0 0 0 9498.0 23897.0 1264.0 0.0 23897.0 23897.0 2373.0

MA1497.1_rc_shift9 (HOXA6_rc)
; oligos_7nt_mkv4_m3 versus MA1497.1_rc (HOXA6_rc); m=61/77; ncol2=10; w=8; offset=4; strand=R; shift=9; score=0.411099; ---------stTAATkr ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 1489.0 1492.0 663.0 7201.0 7201.0 11.0 1482.0 4234.0 c 0 0 0 0 0 0 0 0 0 2020.0 1632.0 502.0 553.0 0.0 908.0 833.0 100.0 g 0 0 0 0 0 0 0 0 0 2457.0 1377.0 94.0 233.0 0.0 745.0 3768.0 2967.0 t 0 0 0 0 0 0 0 0 0 1234.0 2700.0 7201.0 1911.0 0.0 7201.0 7201.0 87.0

MA0890.1_rc_shift9 (GBX2_rc)
; oligos_7nt_mkv4_m3 versus MA0890.1_rc (GBX2_rc); m=62/77; ncol2=10; w=8; offset=4; strand=R; shift=9; score=0.409782; ---------syTAATTr ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 5743.0 3991.0 650.0 27366.0 27366.0 25.0 227.0 11855.0 c 0 0 0 0 0 0 0 0 0 7075.0 10638.0 30.0 673.0 65.0 114.0 1113.0 106.0 g 0 0 0 0 0 0 0 0 0 9159.0 4502.0 73.0 570.0 61.0 250.0 570.0 15511.0 t 0 0 0 0 0 0 0 0 0 5389.0 8236.0 27366.0 318.0 0.0 27366.0 27366.0 699.0

MA0662.1_rc_shift9 (MIXL1_rc)
; oligos_7nt_mkv4_m3 versus MA0662.1_rc (MIXL1_rc); m=63/77; ncol2=10; w=8; offset=4; strand=R; shift=9; score=0.409452; ---------kyTAATTr ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 4397.0 3931.0 2895.0 27042.0 27042.0 736.0 1038.0 15403.0 c 0 0 0 0 0 0 0 0 0 6129.0 8529.0 115.0 2031.0 181.0 556.0 3660.0 1245.0 g 0 0 0 0 0 0 0 0 0 8462.0 4894.0 1903.0 4270.0 510.0 662.0 1911.0 11639.0 t 0 0 0 0 0 0 0 0 0 8054.0 9688.0 27042.0 1385.0 0.0 27042.0 27042.0 2635.0

MA0666.1_rc_shift10 (MSX1_rc)
; oligos_7nt_mkv4_m3 versus MA0666.1_rc (MSX1_rc); m=64/77; ncol2=8; w=7; offset=5; strand=R; shift=10; score=0.409357; ----------bTAATTr ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 460.0 91.0 3073.0 3073.0 0.0 16.0 956.0 c 0 0 0 0 0 0 0 0 0 0 945.0 105.0 251.0 31.0 0.0 139.0 33.0 g 0 0 0 0 0 0 0 0 0 0 814.0 118.0 205.0 0.0 107.0 332.0 2117.0 t 0 0 0 0 0 0 0 0 0 0 855.0 3073.0 63.0 0.0 3073.0 3073.0 82.0

MA0892.1_rc_shift9 (GSX1_rc)
; oligos_7nt_mkv4_m3 versus MA0892.1_rc (GSX1_rc); m=65/77; ncol2=10; w=8; offset=4; strand=R; shift=9; score=0.409244; ---------dyTAATkr ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 315.0 173.0 103.0 1183.0 1183.0 50.0 177.0 733.0 c 0 0 0 0 0 0 0 0 0 214.0 313.0 9.0 0.0 3.0 123.0 60.0 48.0 g 0 0 0 0 0 0 0 0 0 305.0 249.0 0.0 106.0 79.0 106.0 402.0 450.0 t 0 0 0 0 0 0 0 0 0 350.0 448.0 1183.0 106.0 90.0 1183.0 781.0 124.0

MA0648.1_shift9 (GSC)
; oligos_7nt_mkv4_m3 versus MA0648.1 (GSC); m=66/77; ncol2=10; w=8; offset=4; strand=D; shift=9; score=0.409233; ---------syTAATCC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 1249.0 955.0 0.0 6081.0 6081.0 0.0 416.0 315.0 c 0 0 0 0 0 0 0 0 0 1912.0 2885.0 54.0 71.0 0.0 25.0 6081.0 6081.0 g 0 0 0 0 0 0 0 0 0 2039.0 553.0 0.0 176.0 0.0 144.0 452.0 828.0 t 0 0 0 0 0 0 0 0 0 882.0 1688.0 6081.0 89.0 0.0 6081.0 787.0 1099.0

MA0904.2_shift10 (HOXB5)
; oligos_7nt_mkv4_m3 versus MA0904.2 (HOXB5); m=67/77; ncol2=8; w=7; offset=5; strand=D; shift=10; score=0.408684; ----------sTMATKA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 381.0 0.0 3067.0 3067.0 0.0 6.0 3067.0 c 0 0 0 0 0 0 0 0 0 0 1120.0 537.0 1031.0 0.0 0.0 26.0 0.0 g 0 0 0 0 0 0 0 0 0 0 1273.0 0.0 0.0 0.0 0.0 1061.0 564.0 t 0 0 0 0 0 0 0 0 0 0 294.0 3067.0 0.0 0.0 3067.0 3067.0 0.0

MA0634.1_rc_shift9 (ALX3_rc)
; oligos_7nt_mkv4_m3 versus MA0634.1_rc (ALX3_rc); m=68/77; ncol2=10; w=8; offset=4; strand=R; shift=9; score=0.407921; ---------kyTAATTr ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 1168.0 1403.0 977.0 7877.0 7877.0 231.0 629.0 4510.0 c 0 0 0 0 0 0 0 0 0 1503.0 2205.0 87.0 239.0 8.0 141.0 885.0 345.0 g 0 0 0 0 0 0 0 0 0 2446.0 1671.0 449.0 729.0 72.0 317.0 506.0 3367.0 t 0 0 0 0 0 0 0 0 0 2759.0 2597.0 7877.0 697.0 76.0 7877.0 7877.0 794.0

MA0658.1_shift9 (LHX6)
; oligos_7nt_mkv4_m3 versus MA0658.1 (LHX6); m=69/77; ncol2=10; w=8; offset=4; strand=D; shift=9; score=0.407362; ---------rcTAATTA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 1857.0 529.0 0.0 4438.0 4438.0 0.0 0.0 4438.0 c 0 0 0 0 0 0 0 0 0 769.0 3015.0 253.0 90.0 14.0 98.0 766.0 0.0 g 0 0 0 0 0 0 0 0 0 1548.0 791.0 28.0 487.0 0.0 15.0 108.0 243.0 t 0 0 0 0 0 0 0 0 0 264.0 1422.0 4438.0 0.0 0.0 4438.0 4438.0 2.0

MA0709.1_rc_shift10 (Msx3_rc)
; oligos_7nt_mkv4_m3 versus MA0709.1_rc (Msx3_rc); m=70/77; ncol2=8; w=7; offset=5; strand=R; shift=10; score=0.406306; ----------yTAATTr ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 1360.0 213.0 8380.0 8380.0 5.0 94.0 2582.0 c 0 0 0 0 0 0 0 0 0 0 2595.0 88.0 105.0 0.0 38.0 237.0 29.0 g 0 0 0 0 0 0 0 0 0 0 1737.0 59.0 215.0 0.0 89.0 160.0 5798.0 t 0 0 0 0 0 0 0 0 0 0 2689.0 8380.0 121.0 0.0 8380.0 8380.0 312.0

MA0880.1_rc_shift10 (Dlx3_rc)
; oligos_7nt_mkv4_m3 versus MA0880.1_rc (Dlx3_rc); m=71/77; ncol2=8; w=7; offset=5; strand=R; shift=10; score=0.40577; ----------kTAATTr ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 1809.0 691.0 7323.0 7323.0 299.0 643.0 3190.0 c 0 0 0 0 0 0 0 0 0 0 1356.0 101.0 452.0 60.0 62.0 587.0 164.0 g 0 0 0 0 0 0 0 0 0 0 2131.0 202.0 535.0 66.0 536.0 995.0 4133.0 t 0 0 0 0 0 0 0 0 0 0 2027.0 7323.0 399.0 173.0 7323.0 7323.0 572.0

MA0881.1_rc_shift10 (Dlx4_rc)
; oligos_7nt_mkv4_m3 versus MA0881.1_rc (Dlx4_rc); m=72/77; ncol2=8; w=7; offset=5; strand=R; shift=10; score=0.405418; ----------kTAATTr ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 2999.0 1127.0 12054.0 12054.0 499.0 883.0 5213.0 c 0 0 0 0 0 0 0 0 0 0 2286.0 134.0 542.0 38.0 55.0 739.0 145.0 g 0 0 0 0 0 0 0 0 0 0 3703.0 316.0 868.0 85.0 744.0 1500.0 6841.0 t 0 0 0 0 0 0 0 0 0 0 3065.0 12054.0 440.0 88.0 12054.0 12054.0 724.0

MA0910.2_rc_shift10 (HOXD8_rc)
; oligos_7nt_mkv4_m3 versus MA0910.2_rc (HOXD8_rc); m=73/77; ncol2=8; w=7; offset=5; strand=R; shift=10; score=0.405207; ----------kTAATkr ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 452.0 0.0 3629.0 3629.0 0.0 0.0 1480.0 c 0 0 0 0 0 0 0 0 0 0 551.0 0.0 507.0 0.0 0.0 47.0 0.0 g 0 0 0 0 0 0 0 0 0 0 1683.0 0.0 0.0 0.0 0.0 3006.0 2150.0 t 0 0 0 0 0 0 0 0 0 0 943.0 3629.0 178.0 0.0 3629.0 3629.0 0.0

MA0882.1_rc_shift10 (DLX6_rc)
; oligos_7nt_mkv4_m3 versus MA0882.1_rc (DLX6_rc); m=74/77; ncol2=8; w=7; offset=5; strand=R; shift=10; score=0.405123; ----------kTAATTr ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 624.0 193.0 2623.0 2623.0 56.0 184.0 1212.0 c 0 0 0 0 0 0 0 0 0 0 473.0 16.0 68.0 0.0 0.0 143.0 21.0 g 0 0 0 0 0 0 0 0 0 0 823.0 30.0 140.0 0.0 124.0 273.0 1410.0 t 0 0 0 0 0 0 0 0 0 0 703.0 2623.0 48.0 12.0 2623.0 2623.0 137.0

MA0885.1_rc_shift10 (Dlx2_rc)
; oligos_7nt_mkv4_m3 versus MA0885.1_rc (Dlx2_rc); m=75/77; ncol2=8; w=7; offset=5; strand=R; shift=10; score=0.40425; ----------wTAATTr ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 3697.0 579.0 13749.0 13749.0 179.0 524.0 6340.0 c 0 0 0 0 0 0 0 0 0 0 3065.0 55.0 565.0 0.0 15.0 488.0 135.0 g 0 0 0 0 0 0 0 0 0 0 3277.0 46.0 393.0 0.0 289.0 684.0 7409.0 t 0 0 0 0 0 0 0 0 0 0 3710.0 13749.0 260.0 0.0 13749.0 13749.0 543.0

MA1495.1_shift10 (HOXA1)
; oligos_7nt_mkv4_m3 versus MA1495.1 (HOXA1); m=76/77; ncol2=8; w=7; offset=5; strand=D; shift=10; score=0.403619; ----------sTAATtA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 1167.0 0.0 7406.0 7406.0 0.0 0.0 7406.0 c 0 0 0 0 0 0 0 0 0 0 2244.0 1546.0 2083.0 0.0 0.0 1310.0 0.0 g 0 0 0 0 0 0 0 0 0 0 2667.0 0.0 1244.0 0.0 0.0 2265.0 1576.0 t 0 0 0 0 0 0 0 0 0 0 1328.0 7406.0 0.0 0.0 7406.0 7406.0 0.0

MA0675.1_rc_shift10 (NKX6-2_rc)
; oligos_7nt_mkv4_m3 versus MA0675.1_rc (NKX6-2_rc); m=77/77; ncol2=8; w=7; offset=5; strand=R; shift=10; score=0.401203; ----------tTAATkr ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 3846.0 678.0 18935.0 18935.0 546.0 2582.0 11104.0 c 0 0 0 0 0 0 0 0 0 0 1660.0 775.0 551.0 0.0 191.0 1053.0 814.0 g 0 0 0 0 0 0 0 0 0 0 3457.0 370.0 2233.0 0.0 310.0 7581.0 7831.0 t 0 0 0 0 0 0 0 0 0 0 9971.0 18935.0 2468.0 584.0 18935.0 11354.0 1172.0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv3_m2_shift3 ; 21 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv3_m2_shift3 (oligos_6nt_mkv3_m2)
; oligos_6nt_mkv3_m2; m=0 (reference); ncol1=13; shift=3; ncol=17; ---ccCCCCACCCCcc- ; Alignment reference a 0 0 0 238 226 62 65 35 22 821 29 28 29 113 220 281 0 c 0 0 0 512 445 912 984 1089 1100 109 1080 1067 1076 895 515 438 0 g 0 0 0 228 269 95 80 43 44 171 55 65 49 94 241 255 0 t 0 0 0 217 255 126 66 28 29 94 31 35 41 93 219 221 0

MA0039.4_shift3 (KLF4)
; oligos_6nt_mkv3_m2 versus MA0039.4 (KLF4); m=1/20; ncol2=12; w=12; offset=0; strand=D; shift=3; score=0.882519; ---ssCCCCACCChs-- ; cor=; Ncor= a 0 0 0 12570.0 11487.0 2465.0 2105.0 7021.0 1173.0 45602.0 852.0 1617.0 1202.0 16264.0 9959.0 0 0 c 0 0 0 17520.0 14038.0 49209.0 47865.0 45405.0 52875.0 161.0 52366.0 51112.0 51045.0 18249.0 19217.0 0 0 g 0 0 0 14243.0 18473.0 1583.0 1214.0 1422.0 793.0 6598.0 1470.0 1870.0 1005.0 6292.0 14422.0 0 0 t 0 0 0 11484.0 11819.0 2560.0 4633.0 1969.0 976.0 3456.0 1129.0 1218.0 2565.0 15012.0 12219.0 0 0

MA1653.1_shift3 (ZNF148)
; oligos_6nt_mkv3_m2 versus MA1653.1 (ZNF148); m=2/20; ncol2=12; w=12; offset=0; strand=D; shift=3; score=0.801115; ---ysCCCCTCCCcc-- ; cor=; Ncor= a 0 0 0 1399.0 1263.0 82.0 132.0 136.0 89.0 133.0 66.0 352.0 442.0 846.0 841.0 0 0 c 0 0 0 4593.0 4057.0 10799.0 10396.0 10526.0 10833.0 14.0 10954.0 9922.0 9283.0 7239.0 7114.0 0 0 g 0 0 0 2241.0 3215.0 205.0 471.0 401.0 211.0 1012.0 112.0 460.0 392.0 1924.0 2064.0 0 0 t 0 0 0 2966.0 2664.0 113.0 200.0 136.0 66.0 10040.0 67.0 465.0 1082.0 1190.0 1180.0 0 0

MA0753.2_shift3 (ZNF740)
; oligos_6nt_mkv3_m2 versus MA0753.2 (ZNF740); m=3/20; ncol2=13; w=13; offset=0; strand=D; shift=3; score=0.770554; ---cyrCCCCCCCCAc- ; cor=; Ncor= a 0 0 0 186.0 162.0 727.0 60.0 110.0 18.0 22.0 23.0 10.0 2.0 115.0 1055.0 207.0 0 c 0 0 0 502.0 677.0 343.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 239.0 1055.0 0 g 0 0 0 182.0 72.0 1055.0 37.0 14.0 4.0 7.0 3.0 7.0 3.0 6.0 68.0 54.0 0 t 0 0 0 185.0 378.0 312.0 49.0 1.0 16.0 15.0 11.0 6.0 3.0 4.0 134.0 246.0 0

MA0746.2_shift3 (SP3)
; oligos_6nt_mkv3_m2 versus MA0746.2 (SP3); m=4/20; ncol2=13; w=13; offset=0; strand=D; shift=3; score=0.726174; ---srCCACGCCCmCy- ; cor=; Ncor= a 0 0 0 1267.0 2146.0 664.0 160.0 5253.0 6.0 465.0 0.0 0.0 2.0 3430.0 556.0 1516.0 0 c 0 0 0 1884.0 531.0 6591.0 6591.0 1338.0 6591.0 0.0 6591.0 6591.0 6591.0 3160.0 5116.0 2608.0 0 g 0 0 0 1895.0 4445.0 226.0 54.0 2.0 0.0 6591.0 0.0 0.0 2.0 39.0 297.0 524.0 0 t 0 0 0 1545.0 421.0 345.0 202.0 11.0 12.0 504.0 0.0 9.0 718.0 552.0 1475.0 1943.0 0

MA1513.1_shift4 (KLF15)
; oligos_6nt_mkv3_m2 versus MA1513.1 (KLF15); m=5/20; ncol2=11; w=11; offset=1; strand=D; shift=4; score=0.72069; ----scCCCGCCCcs-- ; cor=; Ncor= a 0 0 0 0 1184.0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 1566.0 1067.0 0 0 c 0 0 0 0 2903.0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 6267.0 5013.0 0 0 g 0 0 0 0 5538.0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 1934.0 3124.0 0 0 t 0 0 0 0 1744.0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 1602.0 2165.0 0 0

MA0599.1_shift4 (KLF5)
; oligos_6nt_mkv3_m2 versus MA0599.1 (KLF5); m=6/20; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.705471; ----gCCMCrCCCh--- ; cor=; Ncor= a 0 0 0 0 1429.0 0.0 0.0 3477.0 0.0 5051.0 0.0 0.0 0.0 3915.0 0 0 0 c 0 0 0 0 2023.0 11900.0 12008.0 9569.0 13611.0 0.0 13611.0 13611.0 13135.0 5595.0 0 0 0 g 0 0 0 0 7572.0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 0.0 0 0 0 t 0 0 0 0 2587.0 1711.0 1603.0 565.0 0.0 3378.0 0.0 0.0 476.0 4101.0 0 0 0

MA1564.1_shift4 (SP9)
; oligos_6nt_mkv3_m2 versus MA1564.1 (SP9); m=7/20; ncol2=12; w=12; offset=1; strand=D; shift=4; score=0.701862; ----rcCmCGCCCmcy- ; cor=; Ncor= a 0 0 0 0 834.0 566.0 321.0 2451.0 2.0 211.0 22.0 0.0 39.0 1192.0 188.0 420.0 0 c 0 0 0 0 440.0 2451.0 2451.0 1127.0 2451.0 200.0 2451.0 2451.0 2451.0 1259.0 1863.0 1167.0 0 g 0 0 0 0 952.0 309.0 113.0 56.0 17.0 2451.0 0.0 0.0 24.0 38.0 191.0 204.0 0 t 0 0 0 0 226.0 518.0 284.0 96.0 9.0 173.0 14.0 30.0 412.0 353.0 588.0 660.0 0

MA1522.1_shift3 (MAZ)
; oligos_6nt_mkv3_m2 versus MA1522.1 (MAZ); m=8/20; ncol2=11; w=11; offset=0; strand=D; shift=3; score=0.697711; ---ssCCCCTCCcc--- ; cor=; Ncor= a 0 0 0 2480.0 1819.0 17.0 49.0 36.0 39.0 6.0 90.0 23.0 1109.0 2016.0 0 0 0 c 0 0 0 5198.0 5068.0 14945.0 14630.0 14731.0 14676.0 0.0 14961.0 14944.0 9372.0 6775.0 0 0 0 g 0 0 0 4277.0 5163.0 75.0 384.0 290.0 347.0 130.0 8.0 96.0 1768.0 2539.0 0 0 0 t 0 0 0 3108.0 3013.0 26.0 0.0 6.0 1.0 14927.0 4.0 0.0 2814.0 3733.0 0 0 0

MA1515.1_shift3 (KLF2)
; oligos_6nt_mkv3_m2 versus MA1515.1 (KLF2); m=9/20; ncol2=11; w=11; offset=0; strand=D; shift=3; score=0.684849; ---srCCmCrCCCw--- ; cor=; Ncor= a 0 0 0 1054.0 2510.0 741.0 403.0 4622.0 0.0 1702.0 0.0 128.0 68.0 1838.0 0 0 0 c 0 0 0 1376.0 1103.0 4622.0 4622.0 2265.0 4622.0 274.0 4622.0 4622.0 4622.0 1142.0 0 0 0 g 0 0 0 1320.0 2112.0 495.0 186.0 1060.0 0.0 2920.0 49.0 195.0 105.0 389.0 0 0 0 t 0 0 0 872.0 433.0 346.0 312.0 214.0 78.0 167.0 22.0 9.0 444.0 1253.0 0 0 0

MA0741.1_shift4 (KLF16)
; oligos_6nt_mkv3_m2 versus MA0741.1 (KLF16); m=10/20; ncol2=11; w=11; offset=1; strand=D; shift=4; score=0.677043; ----gmCMCgCCCMC-- ; cor=; Ncor= a 0 0 0 0 666.0 901.0 62.0 1150.0 66.0 497.0 8.0 2.0 16.0 437.0 32.0 0 0 c 0 0 0 0 535.0 1612.0 1612.0 461.0 1612.0 173.0 1612.0 1612.0 1612.0 1175.0 1612.0 0 0 g 0 0 0 0 1612.0 77.0 6.0 32.0 17.0 1612.0 0.0 8.0 3.0 19.0 23.0 0 0 t 0 0 0 0 240.0 116.0 45.0 0.0 19.0 403.0 0.0 0.0 97.0 40.0 370.0 0 0

MA0747.1_shift4 (SP8)
; oligos_6nt_mkv3_m2 versus MA0747.1 (SP8); m=11/20; ncol2=12; w=12; offset=1; strand=D; shift=4; score=0.666356; ----rmCACgCCCmCy- ; cor=; Ncor= a 0 0 0 0 52.0 54.0 25.0 133.0 7.0 25.0 5.0 2.0 0.0 90.0 13.0 31.0 0 c 0 0 0 0 27.0 113.0 167.0 33.0 167.0 37.0 167.0 167.0 167.0 77.0 167.0 52.0 0 g 0 0 0 0 78.0 0.0 0.0 1.0 1.0 167.0 6.0 3.0 4.0 6.0 21.0 1.0 0 t 0 0 0 0 10.0 4.0 13.0 2.0 5.0 39.0 2.0 0.0 15.0 3.0 39.0 82.0 0

MA1511.1_shift4 (KLF10)
; oligos_6nt_mkv3_m2 versus MA1511.1 (KLF10); m=12/20; ncol2=11; w=11; offset=1; strand=D; shift=4; score=0.661016; ----gmCACrCCCmy-- ; cor=; Ncor= a 0 0 0 0 4746.0 6633.0 633.0 18751.0 238.0 13506.0 1.0 0.0 0.0 7545.0 934.0 0 0 c 0 0 0 0 2435.0 12654.0 19619.0 1663.0 19907.0 11.0 19995.0 19994.0 19244.0 11403.0 13118.0 0 0 g 0 0 0 0 14086.0 1299.0 98.0 1723.0 3.0 6234.0 2.0 0.0 0.0 587.0 770.0 0 0 t 0 0 0 0 1251.0 1373.0 485.0 6.0 157.0 543.0 0.0 0.0 2198.0 2686.0 6274.0 0 0

MA0493.1_shift3 (Klf1)
; oligos_6nt_mkv3_m2 versus MA0493.1 (Klf1); m=13/20; ncol2=11; w=11; offset=0; strand=D; shift=3; score=0.64254; ---rrCCACACCCw--- ; cor=; Ncor= a 0 0 0 150.0 167.0 67.0 13.0 404.0 0.0 400.0 0.0 0.0 0.0 280.0 0 0 0 c 0 0 0 76.0 40.0 396.0 461.0 118.0 526.0 0.0 526.0 526.0 508.0 35.0 0 0 0 g 0 0 0 202.0 305.0 32.0 0.0 0.0 0.0 97.0 0.0 0.0 0.0 0.0 0 0 0 t 0 0 0 98.0 14.0 31.0 52.0 4.0 0.0 29.0 0.0 0.0 18.0 211.0 0 0 0

MA1512.1_shift4 (KLF11)
; oligos_6nt_mkv3_m2 versus MA1512.1 (KLF11); m=14/20; ncol2=11; w=11; offset=1; strand=D; shift=4; score=0.620539; ----gcCACGCCCmC-- ; cor=; Ncor= a 0 0 0 0 1882.0 2022.0 650.0 8655.0 0.0 2426.0 11.0 1.0 0.0 4689.0 581.0 0 0 c 0 0 0 0 2054.0 5549.0 8662.0 1289.0 9142.0 52.0 9161.0 9166.0 8941.0 4226.0 8403.0 0 0 g 0 0 0 0 3930.0 401.0 156.0 115.0 0.0 8291.0 18.0 20.0 4.0 69.0 358.0 0 0 t 0 0 0 0 1299.0 1192.0 506.0 27.0 38.0 349.0 23.0 7.0 885.0 761.0 1281.0 0 0

MA1517.1_shift3 (KLF6)
; oligos_6nt_mkv3_m2 versus MA1517.1 (KLF6); m=15/20; ncol2=11; w=11; offset=0; strand=D; shift=3; score=0.616687; ---srcCACRCCCm--- ; cor=; Ncor= a 0 0 0 443.0 1035.0 569.0 432.0 2192.0 0.0 1024.0 0.0 25.0 71.0 955.0 0 0 0 c 0 0 0 624.0 490.0 2192.0 2192.0 284.0 2192.0 0.0 2192.0 2192.0 2192.0 665.0 0 0 0 g 0 0 0 626.0 1157.0 332.0 298.0 60.0 0.0 2192.0 0.0 60.0 12.0 52.0 0 0 0 t 0 0 0 499.0 136.0 219.0 140.0 60.0 24.0 0.0 0.0 0.0 64.0 520.0 0 0 0

MA1107.2_shift2 (KLF9)
; oligos_6nt_mkv3_m2 versus MA1107.2 (KLF9); m=16/20; ncol2=16; w=13; offset=-1; strand=D; shift=2; score=0.588802; --crgCCACACCCAChy ; cor=; Ncor= a 0 0 5359.0 8015.0 2862.0 4664.0 287.0 21899.0 221.0 19187.0 224.0 2428.0 146.0 18837.0 792.0 6948.0 4110.0 c 0 0 10412.0 5108.0 4342.0 17839.0 24709.0 2559.0 24863.0 1070.0 24365.0 22117.0 24682.0 4339.0 20644.0 8797.0 10520.0 g 0 0 5200.0 7779.0 16852.0 1660.0 291.0 708.0 353.0 4340.0 735.0 605.0 205.0 852.0 1778.0 3289.0 4423.0 t 0 0 4608.0 4677.0 1523.0 1416.0 292.0 413.0 142.0 982.0 255.0 429.0 546.0 1551.0 2365.0 6545.0 6526.0

MA0516.2_shift0 (SP2)
; oligos_6nt_mkv3_m2 versus MA0516.2 (SP2); m=17/20; ncol2=17; w=13; offset=-3; strand=D; shift=0; score=0.585771; mTAAGyCCCGCCCmCyy ; cor=; Ncor= a 256.0 53.0 613.0 753.0 54.0 34.0 14.0 16.0 4.0 82.0 0.0 5.0 23.0 402.0 22.0 109.0 150.0 c 308.0 171.0 76.0 84.0 127.0 456.0 774.0 786.0 788.0 52.0 795.0 793.0 774.0 390.0 679.0 221.0 203.0 g 123.0 57.0 0.0 33.0 791.0 8.0 1.0 13.0 22.0 780.0 0.0 26.0 0.0 22.0 1.0 0.0 88.0 t 106.0 608.0 180.0 67.0 43.0 327.0 0.0 8.0 12.0 45.0 18.0 7.0 27.0 17.0 101.0 503.0 352.0

MA1578.1_shift6 (VEZF1)
; oligos_6nt_mkv3_m2 versus MA1578.1 (VEZF1); m=18/20; ncol2=10; w=10; offset=3; strand=D; shift=6; score=0.575025; ------CCCCCCmytw- ; cor=; Ncor= a 0 0 0 0 0 0 71.0 1.0 4.0 2.0 6.0 10.0 406.0 44.0 240.0 333.0 0 c 0 0 0 0 0 0 790.0 997.0 995.0 997.0 989.0 977.0 357.0 550.0 171.0 173.0 0 g 0 0 0 0 0 0 137.0 0.0 0.0 0.0 0.0 3.0 110.0 70.0 211.0 152.0 0 t 0 0 0 0 0 0 0.0 0.0 0.0 0.0 4.0 8.0 125.0 334.0 377.0 339.0 0

MA1627.1_shift5 (Wt1)
; oligos_6nt_mkv3_m2 versus MA1627.1 (Wt1); m=19/20; ncol2=14; w=11; offset=2; strand=D; shift=5; score=0.499726; -----cycCTCCCCCAC ; cor=; Ncor= a 0 0 0 0 0 876.0 667.0 839.0 48.0 120.0 21.0 40.0 43.0 850.0 31.0 3294.0 158.0 c 0 0 0 0 0 1881.0 1630.0 2948.0 4546.0 69.0 4602.0 4354.0 4252.0 3636.0 4573.0 53.0 3749.0 g 0 0 0 0 0 794.0 1161.0 404.0 58.0 319.0 42.0 75.0 120.0 101.0 46.0 990.0 436.0 t 0 0 0 0 0 1140.0 1233.0 500.0 39.0 4183.0 26.0 222.0 276.0 104.0 41.0 354.0 348.0

MA1630.1_rc_shift1 (Znf281_rc)
; oligos_6nt_mkv3_m2 versus MA1630.1_rc (Znf281_rc); m=20/20; ncol2=11; w=9; offset=-2; strand=R; shift=1; score=0.475418; -CcTCCCCCAcc----- ; cor=; Ncor= a 0 315.0 1103.0 11.0 52.0 29.0 23.0 24.0 12.0 6298.0 745.0 954.0 0 0 0 0 0 c 0 5523.0 4312.0 8.0 6457.0 6402.0 6378.0 6356.0 6449.0 29.0 3751.0 3539.0 0 0 0 0 0 g 0 356.0 418.0 45.0 41.0 115.0 131.0 163.0 88.0 233.0 1076.0 878.0 0 0 0 0 0 t 0 374.0 735.0 6504.0 18.0 22.0 36.0 25.0 19.0 8.0 996.0 1197.0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: positions_6nt_m5_shift7 ; 19 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
positions_6nt_m5_shift7 (positions_6nt_m5)
; positions_6nt_m5; m=0 (reference); ncol1=11; shift=7; ncol=18; -------waACAAAGgam ; Alignment reference a 0 0 0 0 0 0 0 295 332 1009 3 971 932 943 25 174 304 327 c 0 0 0 0 0 0 0 132 233 7 969 13 43 15 13 158 252 272 g 0 0 0 0 0 0 0 217 220 5 16 14 26 6 950 625 230 221 t 0 0 0 0 0 0 0 387 246 10 43 33 30 67 43 74 245 211

MA0867.2_shift7 (SOX4)
; positions_6nt_m5 versus MA0867.2 (SOX4); m=1/18; ncol2=10; w=10; offset=0; strand=D; shift=7; score=0.855367; -------gaACAAwGrv- ; cor=; Ncor= a 0 0 0 0 0 0 0 3190.0 5582.0 5582.0 0.0 5582.0 5582.0 5582.0 1018.0 2093.0 1775.0 0 c 0 0 0 0 0 0 0 1771.0 951.0 0.0 5582.0 1.0 6.0 120.0 64.0 1422.0 1438.0 0 g 0 0 0 0 0 0 0 5582.0 2047.0 0.0 37.0 6.0 11.0 50.0 5582.0 3489.0 1889.0 0 t 0 0 0 0 0 0 0 2286.0 431.0 9.0 33.0 0.0 0.0 2719.0 83.0 174.0 480.0 0

MA0442.2_shift6 (SOX10)
; positions_6nt_m5 versus MA0442.2 (SOX10); m=2/18; ncol2=11; w=10; offset=-1; strand=D; shift=6; score=0.809048; ------rraACAAAGvm- ; cor=; Ncor= a 0 0 0 0 0 0 683.0 723.0 1118.0 2023.0 3.0 2029.0 1968.0 1959.0 10.0 666.0 638.0 0 c 0 0 0 0 0 0 397.0 283.0 372.0 4.0 1989.0 7.0 28.0 23.0 13.0 552.0 555.0 0 g 0 0 0 0 0 0 527.0 571.0 317.0 3.0 11.0 7.0 20.0 12.0 2012.0 619.0 505.0 0 t 0 0 0 0 0 0 448.0 478.0 248.0 25.0 52.0 12.0 39.0 61.0 20.0 218.0 357.0 0

MA0143.4_shift7 (SOX2)
; positions_6nt_m5 versus MA0143.4 (SOX2); m=3/18; ncol2=11; w=11; offset=0; strand=D; shift=7; score=0.806603; -------wwACAATGgww ; cor=; Ncor= a 0 0 0 0 0 0 0 29105.0 30279.0 83515.0 1307.0 81587.0 80825.0 4815.0 9926.0 14772.0 28860.0 28960.0 c 0 0 0 0 0 0 0 11041.0 15154.0 436.0 78356.0 1205.0 1742.0 732.0 800.0 6264.0 17158.0 17475.0 g 0 0 0 0 0 0 0 21434.0 17157.0 418.0 1243.0 550.0 2002.0 930.0 73372.0 54414.0 17765.0 15998.0 t 0 0 0 0 0 0 0 24174.0 23164.0 1385.0 4848.0 2412.0 1185.0 79277.0 1656.0 10304.0 21971.0 23321.0

MA1120.1_shift7 (SOX13)
; positions_6nt_m5 versus MA1120.1 (SOX13); m=4/18; ncol2=11; w=11; offset=0; strand=D; shift=7; score=0.795842; -------raACAATGgmw ; cor=; Ncor= a 0 0 0 0 0 0 0 1539.0 1795.0 4451.0 55.0 4329.0 4390.0 156.0 585.0 778.0 1228.0 1228.0 c 0 0 0 0 0 0 0 663.0 958.0 22.0 4276.0 55.0 48.0 77.0 57.0 647.0 1257.0 1126.0 g 0 0 0 0 0 0 0 1395.0 1049.0 40.0 60.0 50.0 63.0 28.0 3837.0 2666.0 1074.0 1046.0 t 0 0 0 0 0 0 0 955.0 750.0 39.0 161.0 118.0 51.0 4291.0 73.0 461.0 993.0 1152.0

MA0514.1_rc_shift6 (Sox3_rc)
; positions_6nt_m5 versus MA0514.1_rc (Sox3_rc); m=5/18; ncol2=10; w=9; offset=-1; strand=R; shift=6; score=0.70454; ------rrrACAAAGG-- ; cor=; Ncor= a 0 0 0 0 0 0 989.0 1173.0 1115.0 2067.0 0.0 2067.0 2067.0 1805.0 515.0 250.0 0 0 c 0 0 0 0 0 0 382.0 22.0 254.0 0.0 1923.0 0.0 0.0 0.0 0.0 330.0 0 0 g 0 0 0 0 0 0 654.0 853.0 698.0 0.0 144.0 0.0 0.0 0.0 1552.0 1487.0 0 0 t 0 0 0 0 0 0 42.0 19.0 0.0 0.0 0.0 0.0 0.0 262.0 0.0 0.0 0 0

MA1603.1_shift6 (Dmrt1)
; positions_6nt_m5 versus MA1603.1 (Dmrt1); m=6/18; ncol2=13; w=11; offset=-1; strand=D; shift=6; score=0.674378; ------gwtACAAWGTaw ; cor=; Ncor= a 0 0 0 0 0 0 2593.0 7473.0 3915.0 17933.0 211.0 17489.0 15568.0 12433.0 727.0 547.0 10367.0 5909.0 c 0 0 0 0 0 0 1113.0 4222.0 1228.0 69.0 17633.0 110.0 482.0 205.0 185.0 161.0 1233.0 1333.0 g 0 0 0 0 0 0 12329.0 1246.0 918.0 82.0 139.0 104.0 456.0 322.0 17032.0 200.0 2521.0 4132.0 t 0 0 0 0 0 0 2260.0 5354.0 12234.0 211.0 312.0 592.0 1789.0 5335.0 351.0 17387.0 4174.0 6921.0

MA0515.1_rc_shift6 (Sox6_rc)
; positions_6nt_m5 versus MA0515.1_rc (Sox6_rc); m=7/18; ncol2=10; w=9; offset=-1; strand=R; shift=6; score=0.647712; ------rrrACAAwGg-- ; cor=; Ncor= a 0 0 0 0 0 0 128.0 133.0 129.0 249.0 0.0 249.0 249.0 88.0 28.0 56.0 0 0 c 0 0 0 0 0 0 31.0 0.0 5.0 0.0 249.0 0.0 0.0 0.0 0.0 50.0 0 0 g 0 0 0 0 0 0 76.0 112.0 115.0 0.0 0.0 0.0 0.0 0.0 221.0 139.0 0 0 t 0 0 0 0 0 0 14.0 4.0 0.0 0.0 0.0 0.0 0.0 161.0 0.0 4.0 0 0

MA1152.1_rc_shift6 (SOX15_rc)
; positions_6nt_m5 versus MA1152.1_rc (SOX15_rc); m=8/18; ncol2=10; w=9; offset=-1; strand=R; shift=6; score=0.626166; ------araACAAwrr-- ; cor=; Ncor= a 0 0 0 0 0 0 407.0 418.0 506.0 971.0 5.0 994.0 988.0 362.0 501.0 267.0 0 0 c 0 0 0 0 0 0 165.0 114.0 125.0 3.0 890.0 2.0 6.0 5.0 26.0 147.0 0 0 g 0 0 0 0 0 0 188.0 253.0 188.0 2.0 21.0 2.0 3.0 3.0 412.0 554.0 0 0 t 0 0 0 0 0 0 241.0 215.0 180.0 24.0 83.0 3.0 3.0 631.0 62.0 32.0 0 0

MA0769.2_rc_shift6 (TCF7_rc)
; positions_6nt_m5 versus MA0769.2_rc (TCF7_rc); m=9/18; ncol2=11; w=10; offset=-1; strand=R; shift=6; score=0.60771; ------aswTCAAAGrm- ; cor=; Ncor= a 0 0 0 0 0 0 7070.0 1982.0 8498.0 239.0 478.0 14489.0 14178.0 14556.0 157.0 4082.0 4335.0 0 c 0 0 0 0 0 0 1688.0 5325.0 1220.0 115.0 13972.0 83.0 266.0 67.0 206.0 3198.0 3981.0 0 g 0 0 0 0 0 0 2740.0 4774.0 855.0 63.0 278.0 62.0 248.0 125.0 14379.0 4604.0 3657.0 0 t 0 0 0 0 0 0 3496.0 2913.0 4421.0 14577.0 266.0 360.0 302.0 246.0 252.0 3110.0 3021.0 0

MA0078.1_rc_shift8 (Sox17_rc)
; positions_6nt_m5 versus MA0078.1_rc (Sox17_rc); m=10/18; ncol2=9; w=9; offset=1; strand=R; shift=8; score=0.585843; --------sACAATrdr- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 4.0 29.0 0.0 31.0 30.0 1.0 9.0 11.0 9.0 0 c 0 0 0 0 0 0 0 0 10.0 2.0 31.0 0.0 0.0 0.0 1.0 4.0 6.0 0 g 0 0 0 0 0 0 0 0 17.0 0.0 0.0 0.0 1.0 0.0 18.0 8.0 9.0 0 t 0 0 0 0 0 0 0 0 0.0 0.0 0.0 0.0 0.0 30.0 3.0 8.0 7.0 0

MA0077.1_rc_shift7 (SOX9_rc)
; positions_6nt_m5 versus MA0077.1_rc (SOX9_rc); m=11/18; ncol2=9; w=9; offset=0; strand=R; shift=7; score=0.584339; -------rAACAATrG-- ; cor=; Ncor= a 0 0 0 0 0 0 0 24.0 54.0 59.0 0.0 65.0 71.0 4.0 24.0 9.0 0 0 c 0 0 0 0 0 0 0 7.0 6.0 4.0 72.0 4.0 2.0 0.0 6.0 9.0 0 0 g 0 0 0 0 0 0 0 31.0 7.0 0.0 2.0 0.0 1.0 1.0 38.0 55.0 0 0 t 0 0 0 0 0 0 0 14.0 9.0 13.0 2.0 7.0 2.0 71.0 8.0 3.0 0 0

MA0868.2_shift6 (SOX8)
; positions_6nt_m5 versus MA0868.2 (SOX8); m=12/18; ncol2=10; w=9; offset=-1; strand=D; shift=6; score=0.564306; ------agAACAATrg-- ; cor=; Ncor= a 0 0 0 0 0 0 1827.0 740.0 1827.0 1827.0 3.0 1827.0 1827.0 273.0 1356.0 300.0 0 0 c 0 0 0 0 0 0 1124.0 414.0 151.0 0.0 1827.0 0.0 43.0 36.0 208.0 421.0 0 0 g 0 0 0 0 0 0 854.0 1827.0 263.0 0.0 35.0 0.0 0.0 20.0 1827.0 912.0 0 0 t 0 0 0 0 0 0 724.0 571.0 222.0 45.0 70.0 16.0 36.0 1827.0 287.0 193.0 0 0

MA0523.1_shift4 (TCF7L2)
; positions_6nt_m5 versus MA0523.1 (TCF7L2); m=13/18; ncol2=14; w=11; offset=-3; strand=D; shift=4; score=0.552001; ----rrAswTCAAAGgva ; cor=; Ncor= a 0 0 0 0 1525.0 1808.0 3070.0 85.0 2795.0 138.0 155.0 4188.0 4103.0 4169.0 303.0 1035.0 1398.0 1782.0 c 0 0 0 0 756.0 840.0 136.0 1947.0 26.0 0.0 3304.0 0.0 15.0 0.0 37.0 849.0 1123.0 826.0 g 0 0 0 0 1140.0 1153.0 559.0 2008.0 0.0 0.0 729.0 0.0 70.0 19.0 3848.0 2008.0 1210.0 757.0 t 0 0 0 0 767.0 387.0 423.0 148.0 1367.0 4050.0 0.0 0.0 0.0 0.0 0.0 296.0 457.0 823.0

MA1563.1_shift8 (SOX18)
; positions_6nt_m5 versus MA1563.1 (SOX18); m=14/18; ncol2=8; w=8; offset=1; strand=D; shift=8; score=0.520403; --------vACaAyGs-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 153.0 589.0 0.0 589.0 589.0 0.0 188.0 116.0 0 0 c 0 0 0 0 0 0 0 0 216.0 33.0 589.0 139.0 104.0 374.0 0.0 287.0 0 0 g 0 0 0 0 0 0 0 0 168.0 140.0 0.0 216.0 67.0 0.0 589.0 190.0 0 0 t 0 0 0 0 0 0 0 0 52.0 94.0 0.0 27.0 14.0 589.0 0.0 0.0 0 0

MA1421.1_shift4 (TCF7L1)
; positions_6nt_m5 versus MA1421.1 (TCF7L1); m=15/18; ncol2=12; w=9; offset=-3; strand=D; shift=4; score=0.460051; ----AAAGATCAAAGG-- ; cor=; Ncor= a 0 0 0 0 109.0 159.0 159.0 0.0 159.0 0.0 5.0 159.0 159.0 159.0 0.0 28.0 0 0 c 0 0 0 0 20.0 7.0 0.0 33.0 9.0 6.0 159.0 2.0 0.0 0.0 9.0 9.0 0 0 g 0 0 0 0 6.0 30.0 0.0 126.0 13.0 9.0 0.0 1.0 0.0 2.0 159.0 113.0 0 0 t 0 0 0 0 24.0 7.0 5.0 6.0 18.0 159.0 0.0 0.0 0.0 0.0 5.0 9.0 0 0

MA0084.1_shift5 (SRY)
; positions_6nt_m5 versus MA0084.1 (SRY); m=16/18; ncol2=9; w=7; offset=-2; strand=D; shift=5; score=0.448424; -----kwwaACAAw---- ; cor=; Ncor= a 0 0 0 0 0 5.0 8.0 15.0 18.0 25.0 0.0 28.0 27.0 7.0 0 0 0 0 c 0 0 0 0 0 5.0 3.0 0.0 3.0 0.0 26.0 0.0 0.0 0.0 0 0 0 0 g 0 0 0 0 0 10.0 4.0 3.0 3.0 0.0 0.0 0.0 1.0 2.0 0 0 0 0 t 0 0 0 0 0 8.0 13.0 10.0 4.0 3.0 2.0 0.0 0.0 19.0 0 0 0 0

MA0087.1_rc_shift7 (Sox5_rc)
; positions_6nt_m5 versus MA0087.1_rc (Sox5_rc); m=17/18; ncol2=7; w=7; offset=0; strand=R; shift=7; score=0.448344; -------wAACAAT---- ; cor=; Ncor= a 0 0 0 0 0 0 0 8.0 21.0 22.0 0.0 23.0 22.0 0.0 0 0 0 0 c 0 0 0 0 0 0 0 4.0 0.0 0.0 22.0 0.0 1.0 0.0 0 0 0 0 g 0 0 0 0 0 0 0 3.0 1.0 1.0 0.0 0.0 0.0 0.0 0 0 0 0 t 0 0 0 0 0 0 0 8.0 1.0 0.0 1.0 0.0 0.0 23.0 0 0 0 0

MA0851.1_shift0 (Foxj3)
; positions_6nt_m5 versus MA0851.1 (Foxj3); m=18/18; ncol2=17; w=10; offset=-7; strand=D; shift=0; score= 0.4005; hraarRTAAACAAwsmc- ; cor=; Ncor= a 27.0 34.0 48.0 51.0 35.0 30.0 1.0 91.0 96.0 99.0 0.0 99.0 79.0 57.0 22.0 27.0 24.0 0 c 26.0 13.0 19.0 13.0 13.0 1.0 2.0 8.0 2.0 0.0 81.0 0.0 7.0 9.0 34.0 27.0 39.0 0 g 21.0 31.0 16.0 17.0 33.0 68.0 0.0 0.0 0.0 0.0 0.0 0.0 6.0 7.0 26.0 24.0 17.0 0 t 26.0 22.0 17.0 19.0 20.0 0.0 97.0 0.0 3.0 1.0 18.0 1.0 9.0 27.0 18.0 22.0 19.0 0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv4_m4_shift3 ; 22 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv4_m4_shift3 (oligos_7nt_mkv4_m4)
; oligos_7nt_mkv4_m4; m=0 (reference); ncol1=15; shift=3; ncol=18; ---ttTGCATrACAAwrg ; Alignment reference a 0 0 0 94 150 122 79 51 653 22 182 633 28 641 643 222 203 170 c 0 0 0 81 150 40 44 610 10 2 63 18 548 18 15 39 75 148 g 0 0 0 59 84 30 528 14 11 10 379 6 60 7 17 34 328 283 t 0 0 0 451 301 493 34 10 11 651 61 28 49 19 10 390 79 84

MA0142.1_rc_shift2 (Pou5f1::Sox2_rc)
; oligos_7nt_mkv4_m4 versus MA0142.1_rc (Pou5f1::Sox2_rc); m=1/21; ncol2=15; w=14; offset=-1; strand=R; shift=2; score=0.829371; --aTtTGCATrwsAAwr- ; cor=; Ncor= a 0 0 837.0 53.0 92.0 269.0 196.0 104.0 1332.0 80.0 612.0 907.0 63.0 1231.0 1270.0 701.0 389.0 0 c 0 0 207.0 75.0 315.0 30.0 129.0 1239.0 15.0 24.0 186.0 29.0 825.0 79.0 36.0 28.0 66.0 0 g 0 0 119.0 33.0 68.0 16.0 1029.0 16.0 5.0 30.0 365.0 18.0 363.0 12.0 50.0 58.0 846.0 0 t 0 0 198.0 1200.0 887.0 1050.0 14.0 10.0 17.0 1235.0 206.0 415.0 118.0 47.0 11.0 579.0 63.0 0

MA1152.1_rc_shift8 (SOX15_rc)
; oligos_7nt_mkv4_m4 versus MA1152.1_rc (SOX15_rc); m=2/21; ncol2=10; w=10; offset=5; strand=R; shift=8; score=0.536734; --------araACAAwrr ; cor=; Ncor= a 0 0 0 0 0 0 0 0 407.0 418.0 506.0 971.0 5.0 994.0 988.0 362.0 501.0 267.0 c 0 0 0 0 0 0 0 0 165.0 114.0 125.0 3.0 890.0 2.0 6.0 5.0 26.0 147.0 g 0 0 0 0 0 0 0 0 188.0 253.0 188.0 2.0 21.0 2.0 3.0 3.0 412.0 554.0 t 0 0 0 0 0 0 0 0 241.0 215.0 180.0 24.0 83.0 3.0 3.0 631.0 62.0 32.0

MA0515.1_rc_shift8 (Sox6_rc)
; oligos_7nt_mkv4_m4 versus MA0515.1_rc (Sox6_rc); m=3/21; ncol2=10; w=10; offset=5; strand=R; shift=8; score=0.510672; --------rrrACAAwGg ; cor=; Ncor= a 0 0 0 0 0 0 0 0 128.0 133.0 129.0 249.0 0.0 249.0 249.0 88.0 28.0 56.0 c 0 0 0 0 0 0 0 0 31.0 0.0 5.0 0.0 249.0 0.0 0.0 0.0 0.0 50.0 g 0 0 0 0 0 0 0 0 76.0 112.0 115.0 0.0 0.0 0.0 0.0 0.0 221.0 139.0 t 0 0 0 0 0 0 0 0 14.0 4.0 0.0 0.0 0.0 0.0 0.0 161.0 0.0 4.0

MA0868.2_shift8 (SOX8)
; oligos_7nt_mkv4_m4 versus MA0868.2 (SOX8); m=4/21; ncol2=10; w=10; offset=5; strand=D; shift=8; score=0.50504; --------agAACAATrg ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1827.0 740.0 1827.0 1827.0 3.0 1827.0 1827.0 273.0 1356.0 300.0 c 0 0 0 0 0 0 0 0 1124.0 414.0 151.0 0.0 1827.0 0.0 43.0 36.0 208.0 421.0 g 0 0 0 0 0 0 0 0 854.0 1827.0 263.0 0.0 35.0 0.0 0.0 20.0 1827.0 912.0 t 0 0 0 0 0 0 0 0 724.0 571.0 222.0 45.0 70.0 16.0 36.0 1827.0 287.0 193.0

MA0078.1_rc_shift10 (Sox17_rc)
; oligos_7nt_mkv4_m4 versus MA0078.1_rc (Sox17_rc); m=5/21; ncol2=9; w=8; offset=7; strand=R; shift=10; score=0.471455; ----------sACAATrd ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 4.0 29.0 0.0 31.0 30.0 1.0 9.0 11.0 c 0 0 0 0 0 0 0 0 0 0 10.0 2.0 31.0 0.0 0.0 0.0 1.0 4.0 g 0 0 0 0 0 0 0 0 0 0 17.0 0.0 0.0 0.0 1.0 0.0 18.0 8.0 t 0 0 0 0 0 0 0 0 0 0 0.0 0.0 0.0 0.0 0.0 30.0 3.0 8.0

MA0514.1_rc_shift8 (Sox3_rc)
; oligos_7nt_mkv4_m4 versus MA0514.1_rc (Sox3_rc); m=6/21; ncol2=10; w=10; offset=5; strand=R; shift=8; score=0.468838; --------rrrACAAAGG ; cor=; Ncor= a 0 0 0 0 0 0 0 0 989.0 1173.0 1115.0 2067.0 0.0 2067.0 2067.0 1805.0 515.0 250.0 c 0 0 0 0 0 0 0 0 382.0 22.0 254.0 0.0 1923.0 0.0 0.0 0.0 0.0 330.0 g 0 0 0 0 0 0 0 0 654.0 853.0 698.0 0.0 144.0 0.0 0.0 0.0 1552.0 1487.0 t 0 0 0 0 0 0 0 0 42.0 19.0 0.0 0.0 0.0 0.0 0.0 262.0 0.0 0.0

MA1115.1_rc_shift1 (POU5F1_rc)
; oligos_7nt_mkv4_m4 versus MA1115.1_rc (POU5F1_rc); m=7/21; ncol2=11; w=9; offset=-2; strand=R; shift=1; score=0.464036; -haTTTGCATww------ ; cor=; Ncor= a 0 3637.0 6383.0 307.0 838.0 1108.0 1723.0 634.0 12834.0 70.0 4818.0 4846.0 0 0 0 0 0 0 c 0 3551.0 2071.0 257.0 1026.0 118.0 548.0 11571.0 67.0 229.0 1908.0 1996.0 0 0 0 0 0 0 g 0 2450.0 2104.0 270.0 690.0 132.0 10310.0 192.0 130.0 122.0 2785.0 1290.0 0 0 0 0 0 0 t 0 3476.0 2556.0 12280.0 10560.0 11756.0 533.0 717.0 83.0 12693.0 3603.0 4982.0 0 0 0 0 0 0

MA0025.2_rc_shift1 (NFIL3_rc)
; oligos_7nt_mkv4_m4 versus MA0025.2_rc (NFIL3_rc); m=8/21; ncol2=13; w=11; offset=-2; strand=R; shift=1; score=0.455925; -wtaTTrCATAAyw---- ; cor=; Ncor= a 0 6893.0 5543.0 13143.0 474.0 434.0 9180.0 610.0 20334.0 433.0 20606.0 20927.0 2798.0 7109.0 0 0 0 0 c 0 4482.0 4152.0 2701.0 360.0 171.0 454.0 20459.0 492.0 990.0 1714.0 518.0 7261.0 5615.0 0 0 0 0 g 0 4929.0 5630.0 4959.0 251.0 543.0 12004.0 467.0 1511.0 220.0 208.0 681.0 3896.0 3904.0 0 0 0 0 t 0 6692.0 7671.0 2193.0 21911.0 21848.0 1358.0 1460.0 659.0 21353.0 468.0 870.0 9041.0 6368.0 0 0 0 0

MA0077.1_rc_shift9 (SOX9_rc)
; oligos_7nt_mkv4_m4 versus MA0077.1_rc (SOX9_rc); m=9/21; ncol2=9; w=9; offset=6; strand=R; shift=9; score=0.455899; ---------rAACAATrG ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 24.0 54.0 59.0 0.0 65.0 71.0 4.0 24.0 9.0 c 0 0 0 0 0 0 0 0 0 7.0 6.0 4.0 72.0 4.0 2.0 0.0 6.0 9.0 g 0 0 0 0 0 0 0 0 0 31.0 7.0 0.0 2.0 0.0 1.0 1.0 38.0 55.0 t 0 0 0 0 0 0 0 0 0 14.0 9.0 13.0 2.0 7.0 2.0 71.0 8.0 3.0

MA0867.2_shift9 (SOX4)
; oligos_7nt_mkv4_m4 versus MA0867.2 (SOX4); m=10/21; ncol2=10; w=9; offset=6; strand=D; shift=9; score=0.451638; ---------gaACAAwGr ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 3190.0 5582.0 5582.0 0.0 5582.0 5582.0 5582.0 1018.0 2093.0 c 0 0 0 0 0 0 0 0 0 1771.0 951.0 0.0 5582.0 1.0 6.0 120.0 64.0 1422.0 g 0 0 0 0 0 0 0 0 0 5582.0 2047.0 0.0 37.0 6.0 11.0 50.0 5582.0 3489.0 t 0 0 0 0 0 0 0 0 0 2286.0 431.0 9.0 33.0 0.0 0.0 2719.0 83.0 174.0

MA0785.1_rc_shift1 (POU2F1_rc)
; oligos_7nt_mkv4_m4 versus MA0785.1_rc (POU2F1_rc); m=11/21; ncol2=12; w=10; offset=-2; strand=R; shift=1; score=0.443616; -aATTwgCATAwt----- ; cor=; Ncor= a 0 4262.0 10582.0 158.0 787.0 3651.0 3375.0 1326.0 10582.0 43.0 10582.0 5231.0 2075.0 0 0 0 0 0 c 0 2504.0 755.0 51.0 879.0 46.0 1351.0 10582.0 213.0 29.0 474.0 2142.0 1494.0 0 0 0 0 0 g 0 1840.0 457.0 37.0 108.0 33.0 10582.0 82.0 501.0 12.0 1347.0 1046.0 1938.0 0 0 0 0 0 t 0 1976.0 1422.0 10582.0 10582.0 6932.0 300.0 186.0 153.0 10582.0 756.0 5351.0 5076.0 0 0 0 0 0

MA0792.1_rc_shift2 (POU5F1B_rc)
; oligos_7nt_mkv4_m4 versus MA0792.1_rc (POU5F1B_rc); m=12/21; ncol2=9; w=8; offset=-1; strand=R; shift=2; score=0.442936; --ATTwrCATA------- ; cor=; Ncor= a 0 0 9519.0 203.0 896.0 3220.0 3828.0 1790.0 9519.0 84.0 9519.0 0 0 0 0 0 0 0 c 0 0 750.0 97.0 856.0 65.0 1293.0 9519.0 206.0 67.0 808.0 0 0 0 0 0 0 0 g 0 0 537.0 65.0 144.0 51.0 9519.0 94.0 364.0 21.0 1778.0 0 0 0 0 0 0 0 t 0 0 1559.0 9519.0 9519.0 6299.0 398.0 322.0 171.0 9519.0 1326.0 0 0 0 0 0 0 0

MA0143.4_shift9 (SOX2)
; oligos_7nt_mkv4_m4 versus MA0143.4 (SOX2); m=13/21; ncol2=11; w=9; offset=6; strand=D; shift=9; score=0.438138; ---------wwACAATGg ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 29105.0 30279.0 83515.0 1307.0 81587.0 80825.0 4815.0 9926.0 14772.0 c 0 0 0 0 0 0 0 0 0 11041.0 15154.0 436.0 78356.0 1205.0 1742.0 732.0 800.0 6264.0 g 0 0 0 0 0 0 0 0 0 21434.0 17157.0 418.0 1243.0 550.0 2002.0 930.0 73372.0 54414.0 t 0 0 0 0 0 0 0 0 0 24174.0 23164.0 1385.0 4848.0 2412.0 1185.0 79277.0 1656.0 10304.0

MA1563.1_shift10 (SOX18)
; oligos_7nt_mkv4_m4 versus MA1563.1 (SOX18); m=14/21; ncol2=8; w=8; offset=7; strand=D; shift=10; score=0.437957; ----------vACaAyGs ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 153.0 589.0 0.0 589.0 589.0 0.0 188.0 116.0 c 0 0 0 0 0 0 0 0 0 0 216.0 33.0 589.0 139.0 104.0 374.0 0.0 287.0 g 0 0 0 0 0 0 0 0 0 0 168.0 140.0 0.0 216.0 67.0 0.0 589.0 190.0 t 0 0 0 0 0 0 0 0 0 0 52.0 94.0 0.0 27.0 14.0 589.0 0.0 0.0

MA1120.1_shift9 (SOX13)
; oligos_7nt_mkv4_m4 versus MA1120.1 (SOX13); m=15/21; ncol2=11; w=9; offset=6; strand=D; shift=9; score=0.432771; ---------raACAATGg ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 1539.0 1795.0 4451.0 55.0 4329.0 4390.0 156.0 585.0 778.0 c 0 0 0 0 0 0 0 0 0 663.0 958.0 22.0 4276.0 55.0 48.0 77.0 57.0 647.0 g 0 0 0 0 0 0 0 0 0 1395.0 1049.0 40.0 60.0 50.0 63.0 28.0 3837.0 2666.0 t 0 0 0 0 0 0 0 0 0 955.0 750.0 39.0 161.0 118.0 51.0 4291.0 73.0 461.0

MA0789.1_rc_shift2 (POU3F4_rc)
; oligos_7nt_mkv4_m4 versus MA0789.1_rc (POU3F4_rc); m=16/21; ncol2=9; w=8; offset=-1; strand=R; shift=2; score=0.432253; --ATTwGCATA------- ; cor=; Ncor= a 0 0 11117.0 168.0 885.0 4670.0 2565.0 245.0 11117.0 26.0 11117.0 0 0 0 0 0 0 0 c 0 0 292.0 88.0 315.0 56.0 602.0 11117.0 24.0 68.0 136.0 0 0 0 0 0 0 0 g 0 0 247.0 47.0 332.0 10.0 11117.0 19.0 59.0 23.0 349.0 0 0 0 0 0 0 0 t 0 0 705.0 11117.0 11117.0 6447.0 136.0 53.0 59.0 11117.0 941.0 0 0 0 0 0 0 0

MA0627.2_rc_shift0 (POU2F3_rc)
; oligos_7nt_mkv4_m4 versus MA0627.2_rc (POU2F3_rc); m=17/21; ncol2=13; w=10; offset=-3; strand=R; shift=0; score=0.425045; wwATTTGCATatw----- ; cor=; Ncor= a 17245.0 15909.0 43338.0 330.0 3276.0 896.0 3716.0 2827.0 53366.0 931.0 37593.0 13775.0 16525.0 0 0 0 0 0 c 7941.0 13237.0 4098.0 233.0 804.0 138.0 1079.0 51971.0 1251.0 354.0 3029.0 8770.0 10722.0 0 0 0 0 0 g 11936.0 10595.0 3478.0 164.0 567.0 80.0 50288.0 251.0 322.0 194.0 6885.0 6824.0 11383.0 0 0 0 0 0 t 18907.0 16288.0 5115.0 55302.0 51382.0 54915.0 946.0 980.0 1090.0 54550.0 8522.0 26660.0 17399.0 0 0 0 0 0

MA0084.1_shift7 (SRY)
; oligos_7nt_mkv4_m4 versus MA0084.1 (SRY); m=18/21; ncol2=9; w=9; offset=4; strand=D; shift=7; score=0.420649; -------kwwaACAAw-- ; cor=; Ncor= a 0 0 0 0 0 0 0 5.0 8.0 15.0 18.0 25.0 0.0 28.0 27.0 7.0 0 0 c 0 0 0 0 0 0 0 5.0 3.0 0.0 3.0 0.0 26.0 0.0 0.0 0.0 0 0 g 0 0 0 0 0 0 0 10.0 4.0 3.0 3.0 0.0 0.0 0.0 1.0 2.0 0 0 t 0 0 0 0 0 0 0 8.0 13.0 10.0 4.0 3.0 2.0 0.0 0.0 19.0 0 0

MA0786.1_rc_shift0 (POU3F1_rc)
; oligos_7nt_mkv4_m4 versus MA0786.1_rc (POU3F1_rc); m=19/21; ncol2=12; w=9; offset=-3; strand=R; shift=0; score=0.417405; wmATTwrCATAw------ ; cor=; Ncor= a 961.0 1167.0 2471.0 63.0 284.0 1048.0 1119.0 232.0 2471.0 21.0 2471.0 1437.0 0 0 0 0 0 0 c 452.0 620.0 128.0 25.0 130.0 21.0 413.0 2471.0 21.0 26.0 128.0 322.0 0 0 0 0 0 0 g 478.0 302.0 95.0 20.0 103.0 1.0 2471.0 13.0 53.0 7.0 186.0 126.0 0 0 0 0 0 0 t 1510.0 382.0 259.0 2471.0 2471.0 1423.0 170.0 37.0 44.0 2471.0 505.0 1034.0 0 0 0 0 0 0

MA0788.1_rc_shift0 (POU3F3_rc)
; oligos_7nt_mkv4_m4 versus MA0788.1_rc (POU3F3_rc); m=20/21; ncol2=13; w=10; offset=-3; strand=R; shift=0; score=0.41052; waATTwGCATAww----- ; cor=; Ncor= a 542.0 1078.0 1078.0 14.0 79.0 572.0 343.0 86.0 1078.0 30.0 1078.0 637.0 290.0 0 0 0 0 0 c 115.0 237.0 12.0 15.0 77.0 1.0 118.0 1078.0 49.0 12.0 64.0 131.0 137.0 0 0 0 0 0 g 85.0 141.0 20.0 6.0 11.0 4.0 1078.0 10.0 33.0 11.0 57.0 41.0 75.0 0 0 0 0 0 t 536.0 240.0 53.0 1078.0 1078.0 506.0 28.0 22.0 25.0 1078.0 129.0 440.0 576.0 0 0 0 0 0

MA0787.1_rc_shift0 (POU3F2_rc)
; oligos_7nt_mkv4_m4 versus MA0787.1_rc (POU3F2_rc); m=21/21; ncol2=12; w=9; offset=-3; strand=R; shift=0; score=0.405371; tmATTwGCATAw------ ; cor=; Ncor= a 562.0 840.0 1292.0 13.0 45.0 604.0 372.0 60.0 1292.0 0.0 1292.0 700.0 0 0 0 0 0 0 c 261.0 452.0 28.0 0.0 32.0 1.0 153.0 1292.0 12.0 25.0 40.0 171.0 0 0 0 0 0 0 g 262.0 165.0 19.0 6.0 16.0 4.0 1292.0 9.0 30.0 16.0 65.0 61.0 0 0 0 0 0 0 t 1292.0 137.0 63.0 1292.0 1292.0 688.0 68.0 19.0 28.0 1292.0 163.0 591.0 0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv4_m1_shift3 ; 12 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv4_m1_shift3 (oligos_7nt_mkv4_m1)
; oligos_7nt_mkv4_m1; m=0 (reference); ncol1=16; shift=3; ncol=19; ---tswtATGCAaATghrt ; Alignment reference a 0 0 0 247 218 642 179 967 25 37 23 941 731 1022 62 214 318 394 259 c 0 0 0 137 343 70 163 24 11 10 931 11 90 17 70 129 278 203 271 g 0 0 0 237 332 102 84 41 14 991 37 55 79 35 63 594 204 295 235 t 0 0 0 472 200 279 667 61 1043 55 102 86 193 19 898 156 293 201 328

MA0507.1_rc_shift5 (POU2F2_rc)
; oligos_7nt_mkv4_m1 versus MA0507.1_rc (POU2F2_rc); m=1/11; ncol2=13; w=13; offset=2; strand=R; shift=5; score=0.79712; -----wyATGCAAATkmr- ; cor=; Ncor= a 0 0 0 0 0 1225.0 476.0 2285.0 0.0 16.0 132.0 2287.0 2029.0 2287.0 251.0 442.0 898.0 835.0 0 c 0 0 0 0 0 107.0 613.0 0.0 0.0 0.0 1997.0 0.0 0.0 0.0 1.0 415.0 593.0 402.0 0 g 0 0 0 0 0 361.0 39.0 2.0 30.0 2271.0 0.0 0.0 2.0 0.0 19.0 825.0 266.0 635.0 0 t 0 0 0 0 0 594.0 1159.0 0.0 2257.0 0.0 158.0 0.0 256.0 0.0 2016.0 605.0 530.0 415.0 0

MA0627.2_shift4 (POU2F3)
; oligos_7nt_mkv4_m1 versus MA0627.2 (POU2F3); m=2/11; ncol2=13; w=13; offset=1; strand=D; shift=4; score=0.786834; ----watATGCAAATww-- ; cor=; Ncor= a 0 0 0 0 17399.0 26660.0 8522.0 54550.0 1090.0 980.0 946.0 54915.0 51382.0 55302.0 5115.0 16288.0 18907.0 0 0 c 0 0 0 0 11383.0 6824.0 6885.0 194.0 322.0 251.0 50288.0 80.0 567.0 164.0 3478.0 10595.0 11936.0 0 0 g 0 0 0 0 10722.0 8770.0 3029.0 354.0 1251.0 51971.0 1079.0 138.0 804.0 233.0 4098.0 13237.0 7941.0 0 0 t 0 0 0 0 16525.0 13775.0 37593.0 931.0 53366.0 2827.0 3716.0 896.0 3276.0 330.0 43338.0 15909.0 17245.0 0 0

MA0784.1_shift4 (POU1F1)
; oligos_7nt_mkv4_m1 versus MA0784.1 (POU1F1); m=3/11; ncol2=14; w=14; offset=1; strand=D; shift=4; score=0.774752; ----awTATGCwAATkAg- ; cor=; Ncor= a 0 0 0 0 1211.0 1128.0 276.0 2128.0 45.0 28.0 98.0 1267.0 2128.0 2128.0 76.0 222.0 2128.0 736.0 0 c 0 0 0 0 247.0 123.0 83.0 14.0 74.0 11.0 2128.0 12.0 11.0 10.0 37.0 241.0 174.0 479.0 0 g 0 0 0 0 273.0 187.0 108.0 32.0 26.0 2128.0 164.0 7.0 82.0 0.0 40.0 840.0 194.0 2128.0 0 t 0 0 0 0 397.0 1000.0 2128.0 19.0 2128.0 176.0 536.0 861.0 85.0 3.0 2128.0 1287.0 273.0 547.0 0

MA0788.1_shift4 (POU3F3)
; oligos_7nt_mkv4_m1 versus MA0788.1 (POU3F3); m=4/11; ncol2=13; w=13; offset=1; strand=D; shift=4; score=0.698953; ----wwTATGCwAATtw-- ; cor=; Ncor= a 0 0 0 0 576.0 440.0 129.0 1078.0 25.0 22.0 28.0 506.0 1078.0 1078.0 53.0 240.0 536.0 0 0 c 0 0 0 0 75.0 41.0 57.0 11.0 33.0 10.0 1078.0 4.0 11.0 6.0 20.0 141.0 85.0 0 0 g 0 0 0 0 137.0 131.0 64.0 12.0 49.0 1078.0 118.0 1.0 77.0 15.0 12.0 237.0 115.0 0 0 t 0 0 0 0 290.0 637.0 1078.0 30.0 1078.0 86.0 343.0 572.0 79.0 14.0 1078.0 1078.0 542.0 0 0

MA0785.1_shift4 (POU2F1)
; oligos_7nt_mkv4_m1 versus MA0785.1 (POU2F1); m=5/11; ncol2=12; w=12; offset=1; strand=D; shift=4; score=0.697067; ----awTATGcwAATt--- ; cor=; Ncor= a 0 0 0 0 5076.0 5351.0 756.0 10582.0 153.0 186.0 300.0 6932.0 10582.0 10582.0 1422.0 1976.0 0 0 0 c 0 0 0 0 1938.0 1046.0 1347.0 12.0 501.0 82.0 10582.0 33.0 108.0 37.0 457.0 1840.0 0 0 0 g 0 0 0 0 1494.0 2142.0 474.0 29.0 213.0 10582.0 1351.0 46.0 879.0 51.0 755.0 2504.0 0 0 0 t 0 0 0 0 2075.0 5231.0 10582.0 43.0 10582.0 1326.0 3375.0 3651.0 787.0 158.0 10582.0 4262.0 0 0 0

MA0786.1_shift5 (POU3F1)
; oligos_7nt_mkv4_m1 versus MA0786.1 (POU3F1); m=6/11; ncol2=12; w=12; offset=2; strand=D; shift=5; score=0.689448; -----wTATGywAATkw-- ; cor=; Ncor= a 0 0 0 0 0 1034.0 505.0 2471.0 44.0 37.0 170.0 1423.0 2471.0 2471.0 259.0 382.0 1510.0 0 0 c 0 0 0 0 0 126.0 186.0 7.0 53.0 13.0 2471.0 1.0 103.0 20.0 95.0 302.0 478.0 0 0 g 0 0 0 0 0 322.0 128.0 26.0 21.0 2471.0 413.0 21.0 130.0 25.0 128.0 620.0 452.0 0 0 t 0 0 0 0 0 1437.0 2471.0 21.0 2471.0 232.0 1119.0 1048.0 284.0 63.0 2471.0 1167.0 961.0 0 0

MA0787.1_shift5 (POU3F2)
; oligos_7nt_mkv4_m1 versus MA0787.1 (POU3F2); m=7/11; ncol2=12; w=12; offset=2; strand=D; shift=5; score=0.68315; -----wTATGCwAATka-- ; cor=; Ncor= a 0 0 0 0 0 591.0 163.0 1292.0 28.0 19.0 68.0 688.0 1292.0 1292.0 63.0 137.0 1292.0 0 0 c 0 0 0 0 0 61.0 65.0 16.0 30.0 9.0 1292.0 4.0 16.0 6.0 19.0 165.0 262.0 0 0 g 0 0 0 0 0 171.0 40.0 25.0 12.0 1292.0 153.0 1.0 32.0 0.0 28.0 452.0 261.0 0 0 t 0 0 0 0 0 700.0 1292.0 0.0 1292.0 60.0 372.0 604.0 45.0 13.0 1292.0 840.0 562.0 0 0

MA1115.1_shift5 (POU5F1)
; oligos_7nt_mkv4_m1 versus MA1115.1 (POU5F1); m=8/11; ncol2=11; w=11; offset=2; strand=D; shift=5; score=0.652709; -----wwATGCAAAtd--- ; cor=; Ncor= a 0 0 0 0 0 4982.0 3603.0 12693.0 83.0 717.0 533.0 11756.0 10560.0 12280.0 2556.0 3476.0 0 0 0 c 0 0 0 0 0 1290.0 2785.0 122.0 130.0 192.0 10310.0 132.0 690.0 270.0 2104.0 2450.0 0 0 0 g 0 0 0 0 0 1996.0 1908.0 229.0 67.0 11571.0 548.0 118.0 1026.0 257.0 2071.0 3551.0 0 0 0 t 0 0 0 0 0 4846.0 4818.0 70.0 12834.0 634.0 1723.0 1108.0 838.0 307.0 6383.0 3637.0 0 0 0

MA0142.1_shift0 (Pou5f1::Sox2)
; oligos_7nt_mkv4_m1 versus MA0142.1 (Pou5f1::Sox2); m=9/11; ncol2=15; w=12; offset=-3; strand=D; shift=0; score=0.57187; ywTTswyATGCAaAt---- ; cor=; Ncor= a 63.0 579.0 11.0 47.0 118.0 415.0 206.0 1235.0 17.0 10.0 14.0 1050.0 887.0 1200.0 198.0 0 0 0 0 c 846.0 58.0 50.0 12.0 363.0 18.0 365.0 30.0 5.0 16.0 1029.0 16.0 68.0 33.0 119.0 0 0 0 0 g 66.0 28.0 36.0 79.0 825.0 29.0 186.0 24.0 15.0 1239.0 129.0 30.0 315.0 75.0 207.0 0 0 0 0 t 389.0 701.0 1270.0 1231.0 63.0 907.0 612.0 80.0 1332.0 104.0 196.0 269.0 92.0 53.0 837.0 0 0 0 0

MA0792.1_shift6 (POU5F1B)
; oligos_7nt_mkv4_m1 versus MA0792.1 (POU5F1B); m=10/11; ncol2=9; w=9; offset=3; strand=D; shift=6; score=0.543224; ------TATGywAAT---- ; cor=; Ncor= a 0 0 0 0 0 0 1326.0 9519.0 171.0 322.0 398.0 6299.0 9519.0 9519.0 1559.0 0 0 0 0 c 0 0 0 0 0 0 1778.0 21.0 364.0 94.0 9519.0 51.0 144.0 65.0 537.0 0 0 0 0 g 0 0 0 0 0 0 808.0 67.0 206.0 9519.0 1293.0 65.0 856.0 97.0 750.0 0 0 0 0 t 0 0 0 0 0 0 9519.0 84.0 9519.0 1790.0 3828.0 3220.0 896.0 203.0 9519.0 0 0 0 0

MA0789.1_shift6 (POU3F4)
; oligos_7nt_mkv4_m1 versus MA0789.1 (POU3F4); m=11/11; ncol2=9; w=9; offset=3; strand=D; shift=6; score=0.540224; ------TATGCwAAT---- ; cor=; Ncor= a 0 0 0 0 0 0 941.0 11117.0 59.0 53.0 136.0 6447.0 11117.0 11117.0 705.0 0 0 0 0 c 0 0 0 0 0 0 349.0 23.0 59.0 19.0 11117.0 10.0 332.0 47.0 247.0 0 0 0 0 g 0 0 0 0 0 0 136.0 68.0 24.0 11117.0 602.0 56.0 315.0 88.0 292.0 0 0 0 0 t 0 0 0 0 0 0 11117.0 26.0 11117.0 245.0 2565.0 4670.0 885.0 168.0 11117.0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv3_m4_shift4 ; 35 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv3_m4_shift4 (oligos_6nt_mkv3_m4)
; oligos_6nt_mkv3_m4; m=0 (reference); ncol1=11; shift=4; ncol=15; ----atTTACATAws ; Alignment reference a 0 0 0 0 460 228 61 32 921 63 1109 80 1031 380 286 c 0 0 0 0 212 227 61 41 41 1038 34 77 47 227 324 g 0 0 0 0 267 182 29 23 187 29 15 56 43 199 301 t 0 0 0 0 257 559 1045 1100 47 66 38 983 75 390 285

MA0785.1_rc_shift3 (POU2F1_rc)
; oligos_6nt_mkv3_m4 versus MA0785.1_rc (POU2F1_rc); m=1/34; ncol2=12; w=11; offset=-1; strand=R; shift=3; score=0.755464; ---aATTwgCATAwt ; cor=; Ncor= a 0 0 0 4262.0 10582.0 158.0 787.0 3651.0 3375.0 1326.0 10582.0 43.0 10582.0 5231.0 2075.0 c 0 0 0 2504.0 755.0 51.0 879.0 46.0 1351.0 10582.0 213.0 29.0 474.0 2142.0 1494.0 g 0 0 0 1840.0 457.0 37.0 108.0 33.0 10582.0 82.0 501.0 12.0 1347.0 1046.0 1938.0 t 0 0 0 1976.0 1422.0 10582.0 10582.0 6932.0 300.0 186.0 153.0 10582.0 756.0 5351.0 5076.0

MA0025.2_rc_shift3 (NFIL3_rc)
; oligos_6nt_mkv3_m4 versus MA0025.2_rc (NFIL3_rc); m=2/34; ncol2=13; w=11; offset=-1; strand=R; shift=3; score=0.730332; ---wtaTTrCATAAy ; cor=; Ncor= a 0 0 0 6893.0 5543.0 13143.0 474.0 434.0 9180.0 610.0 20334.0 433.0 20606.0 20927.0 2798.0 c 0 0 0 4482.0 4152.0 2701.0 360.0 171.0 454.0 20459.0 492.0 990.0 1714.0 518.0 7261.0 g 0 0 0 4929.0 5630.0 4959.0 251.0 543.0 12004.0 467.0 1511.0 220.0 208.0 681.0 3896.0 t 0 0 0 6692.0 7671.0 2193.0 21911.0 21848.0 1358.0 1460.0 659.0 21353.0 468.0 870.0 9041.0

MA0843.1_shift4 (TEF)
; oligos_6nt_mkv3_m4 versus MA0843.1 (TEF); m=3/34; ncol2=12; w=11; offset=0; strand=D; shift=4; score=0.715671; ----yrTTACrTAAy ; cor=; Ncor= a 0 0 0 0 541.0 1971.0 90.0 107.0 3601.0 17.0 1324.0 0.0 3601.0 3601.0 0.0 c 0 0 0 0 1053.0 372.0 18.0 0.0 0.0 3601.0 0.0 133.0 76.0 0.0 2120.0 g 0 0 0 0 853.0 1630.0 5.0 31.0 108.0 0.0 2277.0 43.0 11.0 19.0 269.0 t 0 0 0 0 1154.0 8.0 3601.0 3601.0 0.0 446.0 0.0 3601.0 161.0 10.0 1481.0

MA0639.1_shift4 (DBP)
; oligos_6nt_mkv3_m4 versus MA0639.1 (DBP); m=4/34; ncol2=12; w=11; offset=0; strand=D; shift=4; score=0.697828; ----krTTAYRTAAy ; cor=; Ncor= a 0 0 0 0 1552.0 3706.0 5.0 4.0 7100.0 2.0 3180.0 3.0 7100.0 7100.0 158.0 c 0 0 0 0 1714.0 1130.0 4.0 6.0 0.0 7100.0 17.0 541.0 288.0 1.0 3707.0 g 0 0 0 0 1903.0 3393.0 2.0 602.0 498.0 21.0 7100.0 7.0 7.0 2.0 1543.0 t 0 0 0 0 1930.0 93.0 7100.0 7100.0 4.0 2664.0 1.0 7100.0 6.0 2.0 3393.0

MA0627.2_rc_shift2 (POU2F3_rc)
; oligos_6nt_mkv3_m4 versus MA0627.2_rc (POU2F3_rc); m=5/34; ncol2=13; w=11; offset=-2; strand=R; shift=2; score= 0.6907; --wwATTTGCATatw ; cor=; Ncor= a 0 0 17245.0 15909.0 43338.0 330.0 3276.0 896.0 3716.0 2827.0 53366.0 931.0 37593.0 13775.0 16525.0 c 0 0 7941.0 13237.0 4098.0 233.0 804.0 138.0 1079.0 51971.0 1251.0 354.0 3029.0 8770.0 10722.0 g 0 0 11936.0 10595.0 3478.0 164.0 567.0 80.0 50288.0 251.0 322.0 194.0 6885.0 6824.0 11383.0 t 0 0 18907.0 16288.0 5115.0 55302.0 51382.0 54915.0 946.0 980.0 1090.0 54550.0 8522.0 26660.0 17399.0

MA0792.1_rc_shift4 (POU5F1B_rc)
; oligos_6nt_mkv3_m4 versus MA0792.1_rc (POU5F1B_rc); m=6/34; ncol2=9; w=9; offset=0; strand=R; shift=4; score=0.683103; ----ATTwrCATA-- ; cor=; Ncor= a 0 0 0 0 9519.0 203.0 896.0 3220.0 3828.0 1790.0 9519.0 84.0 9519.0 0 0 c 0 0 0 0 750.0 97.0 856.0 65.0 1293.0 9519.0 206.0 67.0 808.0 0 0 g 0 0 0 0 537.0 65.0 144.0 51.0 9519.0 94.0 364.0 21.0 1778.0 0 0 t 0 0 0 0 1559.0 9519.0 9519.0 6299.0 398.0 322.0 171.0 9519.0 1326.0 0 0

MA1115.1_rc_shift3 (POU5F1_rc)
; oligos_6nt_mkv3_m4 versus MA1115.1_rc (POU5F1_rc); m=7/34; ncol2=11; w=10; offset=-1; strand=R; shift=3; score=0.672704; ---haTTTGCATww- ; cor=; Ncor= a 0 0 0 3637.0 6383.0 307.0 838.0 1108.0 1723.0 634.0 12834.0 70.0 4818.0 4846.0 0 c 0 0 0 3551.0 2071.0 257.0 1026.0 118.0 548.0 11571.0 67.0 229.0 1908.0 1996.0 0 g 0 0 0 2450.0 2104.0 270.0 690.0 132.0 10310.0 192.0 130.0 122.0 2785.0 1290.0 0 t 0 0 0 3476.0 2556.0 12280.0 10560.0 11756.0 533.0 717.0 83.0 12693.0 3603.0 4982.0 0

MA0789.1_rc_shift4 (POU3F4_rc)
; oligos_6nt_mkv3_m4 versus MA0789.1_rc (POU3F4_rc); m=8/34; ncol2=9; w=9; offset=0; strand=R; shift=4; score=0.663355; ----ATTwGCATA-- ; cor=; Ncor= a 0 0 0 0 11117.0 168.0 885.0 4670.0 2565.0 245.0 11117.0 26.0 11117.0 0 0 c 0 0 0 0 292.0 88.0 315.0 56.0 602.0 11117.0 24.0 68.0 136.0 0 0 g 0 0 0 0 247.0 47.0 332.0 10.0 11117.0 19.0 59.0 23.0 349.0 0 0 t 0 0 0 0 705.0 11117.0 11117.0 6447.0 136.0 53.0 59.0 11117.0 941.0 0 0

MA1607.1_rc_shift1 (Foxl2_rc)
; oligos_6nt_mkv3_m4 versus MA1607.1_rc (Foxl2_rc); m=9/34; ncol2=14; w=11; offset=-3; strand=R; shift=1; score=0.653163; -ywTGTTTACAtwwy ; cor=; Ncor= a 0 4100.0 4782.0 1270.0 1970.0 328.0 366.0 204.0 16284.0 479.0 12849.0 2785.0 8493.0 5755.0 4214.0 c 0 4529.0 3844.0 401.0 151.0 411.0 187.0 112.0 419.0 14648.0 1371.0 2107.0 1599.0 3521.0 4621.0 g 0 4329.0 4246.0 807.0 15698.0 216.0 336.0 558.0 301.0 367.0 896.0 2051.0 1576.0 2912.0 3031.0 t 0 5143.0 5229.0 15623.0 282.0 17146.0 17212.0 17227.0 1097.0 2607.0 2985.0 11158.0 6433.0 5913.0 6235.0

MA0788.1_rc_shift2 (POU3F3_rc)
; oligos_6nt_mkv3_m4 versus MA0788.1_rc (POU3F3_rc); m=10/34; ncol2=13; w=11; offset=-2; strand=R; shift=2; score=0.652146; --waATTwGCATAww ; cor=; Ncor= a 0 0 542.0 1078.0 1078.0 14.0 79.0 572.0 343.0 86.0 1078.0 30.0 1078.0 637.0 290.0 c 0 0 115.0 237.0 12.0 15.0 77.0 1.0 118.0 1078.0 49.0 12.0 64.0 131.0 137.0 g 0 0 85.0 141.0 20.0 6.0 11.0 4.0 1078.0 10.0 33.0 11.0 57.0 41.0 75.0 t 0 0 536.0 240.0 53.0 1078.0 1078.0 506.0 28.0 22.0 25.0 1078.0 129.0 440.0 576.0

MA0847.2_rc_shift2 (FOXD2_rc)
; oligos_6nt_mkv3_m4 versus MA0847.2_rc (FOXD2_rc); m=11/34; ncol2=13; w=11; offset=-2; strand=R; shift=2; score=0.649893; --wTRTTTAYwTwrs ; cor=; Ncor= a 0 0 2076.0 209.0 2297.0 33.0 11.0 11.0 5995.0 6.0 1553.0 23.0 3812.0 3589.0 442.0 c 0 0 515.0 125.0 0.0 25.0 17.0 11.0 0.0 5995.0 752.0 1294.0 3.0 309.0 2314.0 g 0 0 1003.0 53.0 5995.0 0.0 209.0 658.0 1005.0 101.0 1208.0 92.0 36.0 2406.0 1834.0 t 0 0 2400.0 5995.0 0.0 5995.0 5995.0 5995.0 148.0 2608.0 2482.0 5995.0 2183.0 865.0 1404.0

MA0043.3_rc_shift3 (HLF_rc)
; oligos_6nt_mkv3_m4 versus MA0043.3_rc (HLF_rc); m=12/34; ncol2=14; w=11; offset=-1; strand=R; shift=3; score=0.648231; ---wkrTTRCATAAy ; cor=; Ncor= a 0 0 0 6732.0 5897.0 6488.0 113.0 98.0 6653.0 189.0 22426.0 209.0 23271.0 23739.0 1410.0 c 0 0 0 5523.0 3218.0 3300.0 189.0 48.0 199.0 21705.0 253.0 1344.0 895.0 148.0 9793.0 g 0 0 0 5267.0 6412.0 13237.0 67.0 122.0 17203.0 112.0 1548.0 125.0 96.0 242.0 4432.0 t 0 0 0 6902.0 8897.0 1399.0 24055.0 24156.0 369.0 2418.0 197.0 22746.0 162.0 295.0 8789.0

MA0786.1_rc_shift2 (POU3F1_rc)
; oligos_6nt_mkv3_m4 versus MA0786.1_rc (POU3F1_rc); m=13/34; ncol2=12; w=10; offset=-2; strand=R; shift=2; score=0.635189; --wmATTwrCATAw- ; cor=; Ncor= a 0 0 961.0 1167.0 2471.0 63.0 284.0 1048.0 1119.0 232.0 2471.0 21.0 2471.0 1437.0 0 c 0 0 452.0 620.0 128.0 25.0 130.0 21.0 413.0 2471.0 21.0 26.0 128.0 322.0 0 g 0 0 478.0 302.0 95.0 20.0 103.0 1.0 2471.0 13.0 53.0 7.0 186.0 126.0 0 t 0 0 1510.0 382.0 259.0 2471.0 2471.0 1423.0 170.0 37.0 44.0 2471.0 505.0 1034.0 0

MA0784.1_rc_shift1 (POU1F1_rc)
; oligos_6nt_mkv3_m4 versus MA0784.1_rc (POU1F1_rc); m=14/34; ncol2=14; w=11; offset=-3; strand=R; shift=1; score=0.62186; -cTmATTwGCATAwt ; cor=; Ncor= a 0 547.0 273.0 1287.0 2128.0 3.0 85.0 861.0 536.0 176.0 2128.0 19.0 2128.0 1000.0 397.0 c 0 2128.0 194.0 840.0 40.0 0.0 82.0 7.0 164.0 2128.0 26.0 32.0 108.0 187.0 273.0 g 0 479.0 174.0 241.0 37.0 10.0 11.0 12.0 2128.0 11.0 74.0 14.0 83.0 123.0 247.0 t 0 736.0 2128.0 222.0 76.0 2128.0 2128.0 1267.0 98.0 28.0 45.0 2128.0 276.0 1128.0 1211.0

MA0787.1_rc_shift2 (POU3F2_rc)
; oligos_6nt_mkv3_m4 versus MA0787.1_rc (POU3F2_rc); m=15/34; ncol2=12; w=10; offset=-2; strand=R; shift=2; score=0.617632; --tmATTwGCATAw- ; cor=; Ncor= a 0 0 562.0 840.0 1292.0 13.0 45.0 604.0 372.0 60.0 1292.0 0.0 1292.0 700.0 0 c 0 0 261.0 452.0 28.0 0.0 32.0 1.0 153.0 1292.0 12.0 25.0 40.0 171.0 0 g 0 0 262.0 165.0 19.0 6.0 16.0 4.0 1292.0 9.0 30.0 16.0 65.0 61.0 0 t 0 0 1292.0 137.0 63.0 1292.0 1292.0 688.0 68.0 19.0 28.0 1292.0 163.0 591.0 0

MA0845.1_rc_shift2 (FOXB1_rc)
; oligos_6nt_mkv3_m4 versus MA0845.1_rc (FOXB1_rc); m=16/34; ncol2=11; w=9; offset=-2; strand=R; shift=2; score=0.603075; --aTrTTKACwTw-- ; cor=; Ncor= a 0 0 4008.0 147.0 4589.0 216.0 381.0 73.0 6841.0 124.0 4858.0 561.0 4448.0 0 0 c 0 0 556.0 157.0 104.0 47.0 0.0 75.0 113.0 6841.0 409.0 1498.0 190.0 0 0 g 0 0 573.0 0.0 2252.0 47.0 213.0 1950.0 240.0 54.0 218.0 263.0 272.0 0 0 t 0 0 1704.0 6841.0 28.0 6841.0 6841.0 4891.0 180.0 1159.0 1983.0 5343.0 2393.0 0 0

MA0032.2_rc_shift2 (FOXC1_rc)
; oligos_6nt_mkv3_m4 versus MA0032.2_rc (FOXC1_rc); m=17/34; ncol2=11; w=9; offset=-2; strand=R; shift=2; score=0.572848; --wTrTTKAYwTw-- ; cor=; Ncor= a 0 0 11787.0 184.0 9708.0 112.0 57.0 45.0 18489.0 51.0 10596.0 1386.0 12038.0 0 0 c 0 0 1107.0 433.0 165.0 141.0 0.0 21.0 390.0 13631.0 2422.0 4165.0 304.0 0 0 g 0 0 1558.0 27.0 8782.0 56.0 108.0 5372.0 1652.0 336.0 2008.0 728.0 772.0 0 0 t 0 0 6702.0 18489.0 122.0 18489.0 18489.0 13117.0 2496.0 4858.0 7893.0 14324.0 6452.0 0 0

MA0507.1_shift1 (POU2F2)
; oligos_6nt_mkv3_m4 versus MA0507.1 (POU2F2); m=18/34; ncol2=13; w=10; offset=-3; strand=D; shift=1; score=0.56635; -ykmATTTGCATrw- ; cor=; Ncor= a 0 415.0 530.0 605.0 2016.0 0.0 256.0 0.0 158.0 0.0 2257.0 0.0 1159.0 594.0 0 c 0 635.0 266.0 825.0 19.0 0.0 2.0 0.0 0.0 2271.0 30.0 2.0 39.0 361.0 0 g 0 402.0 593.0 415.0 1.0 0.0 0.0 0.0 1997.0 0.0 0.0 0.0 613.0 107.0 0 t 0 835.0 898.0 442.0 251.0 2287.0 2029.0 2287.0 132.0 16.0 0.0 2285.0 476.0 1225.0 0

MA0142.1_rc_shift4 (Pou5f1::Sox2_rc)
; oligos_6nt_mkv3_m4 versus MA0142.1_rc (Pou5f1::Sox2_rc); m=19/34; ncol2=15; w=11; offset=0; strand=R; shift=4; score=0.563336; ----aTtTGCATrws ; cor=; Ncor= a 0 0 0 0 837.0 53.0 92.0 269.0 196.0 104.0 1332.0 80.0 612.0 907.0 63.0 c 0 0 0 0 207.0 75.0 315.0 30.0 129.0 1239.0 15.0 24.0 186.0 29.0 825.0 g 0 0 0 0 119.0 33.0 68.0 16.0 1029.0 16.0 5.0 30.0 365.0 18.0 363.0 t 0 0 0 0 198.0 1200.0 887.0 1050.0 14.0 10.0 17.0 1235.0 206.0 415.0 118.0

MA0846.1_rc_shift1 (FOXC2_rc)
; oligos_6nt_mkv3_m4 versus MA0846.1_rc (FOXC2_rc); m=20/34; ncol2=12; w=9; offset=-3; strand=R; shift=1; score=0.491498; -wwTRTTTAywTw-- ; cor=; Ncor= a 0 9461.0 7160.0 215.0 6021.0 242.0 107.0 122.0 20456.0 136.0 9155.0 2080.0 11517.0 0 0 c 0 2649.0 1710.0 328.0 68.0 279.0 81.0 87.0 321.0 14038.0 3129.0 5093.0 454.0 0 0 g 0 3080.0 2087.0 101.0 14435.0 105.0 344.0 6759.0 3773.0 440.0 3476.0 1652.0 1279.0 0 0 t 0 10995.0 13296.0 20456.0 31.0 20456.0 20456.0 20456.0 2005.0 6418.0 11301.0 20456.0 8939.0 0 0

MA0607.1_rc_shift8 (Bhlha15_rc)
; oligos_6nt_mkv3_m4 versus MA0607.1_rc (Bhlha15_rc); m=21/34; ncol2=8; w=7; offset=4; strand=R; shift=8; score=0.462462; --------aCATATG ; cor=; Ncor= a 0 0 0 0 0 0 0 0 614.0 0.0 999.0 0.0 799.0 0.0 0.0 c 0 0 0 0 0 0 0 0 154.0 999.0 0.0 0.0 200.0 0.0 0.0 g 0 0 0 0 0 0 0 0 231.0 0.0 0.0 200.0 0.0 0.0 999.0 t 0 0 0 0 0 0 0 0 1.0 0.0 0.0 799.0 0.0 999.0 0.0

MA0047.3_rc_shift1 (FOXA2_rc)
; oligos_6nt_mkv3_m4 versus MA0047.3_rc (FOXA2_rc); m=22/34; ncol2=11; w=8; offset=-3; strand=R; shift=1; score=0.459346; -wwTGTTTACwt--- ; cor=; Ncor= a 0 66478.0 84100.0 9418.0 59170.0 7805.0 10179.0 6283.0 254489.0 4144.0 117443.0 52026.0 0 0 0 c 0 56632.0 50527.0 2984.0 3603.0 2805.0 6484.0 2641.0 1890.0 236311.0 38538.0 63806.0 0 0 0 g 0 53633.0 50576.0 3086.0 196969.0 3329.0 22429.0 9424.0 2037.0 2928.0 12432.0 34080.0 0 0 0 t 0 85410.0 76950.0 246665.0 2411.0 248214.0 223061.0 243805.0 3737.0 18770.0 93740.0 112241.0 0 0 0

MA1683.1_rc_shift1 (FOXA3_rc)
; oligos_6nt_mkv3_m4 versus MA1683.1_rc (FOXA3_rc); m=23/34; ncol2=11; w=8; offset=-3; strand=R; shift=1; score=0.440475; -wwTGTTTACwy--- ; cor=; Ncor= a 0 13048.0 14069.0 1838.0 7272.0 984.0 978.0 1143.0 46586.0 2596.0 19321.0 9298.0 0 0 0 c 0 11103.0 11451.0 614.0 1205.0 934.0 977.0 636.0 690.0 40396.0 9296.0 12744.0 0 0 0 g 0 9884.0 9975.0 933.0 39509.0 973.0 3883.0 1980.0 903.0 1464.0 3627.0 8520.0 0 0 0 t 0 14902.0 13442.0 45552.0 951.0 46046.0 43099.0 45178.0 758.0 4481.0 16693.0 18375.0 0 0 0

MA0042.2_rc_shift3 (FOXI1_rc)
; oligos_6nt_mkv3_m4 versus MA0042.2_rc (FOXI1_rc); m=24/34; ncol2=7; w=6; offset=-1; strand=R; shift=3; score=0.435922; ---TGTTTAC----- ; cor=; Ncor= a 0 0 0 0.0 810.0 66.0 0.0 0.0 5175.0 0.0 0 0 0 0 0 c 0 0 0 25.0 48.0 29.0 0.0 37.0 35.0 5175.0 0 0 0 0 0 g 0 0 0 12.0 5175.0 23.0 23.0 540.0 60.0 39.0 0 0 0 0 0 t 0 0 0 5175.0 157.0 5175.0 5175.0 5175.0 74.0 618.0 0 0 0 0 0

MA0481.3_rc_shift1 (FOXP1_rc)
; oligos_6nt_mkv3_m4 versus MA0481.3_rc (FOXP1_rc); m=25/34; ncol2=11; w=8; offset=-3; strand=R; shift=1; score=0.43286; -wwTGTTTACwt--- ; cor=; Ncor= a 0 21623.0 21427.0 3609.0 10795.0 2069.0 2585.0 1947.0 71862.0 3111.0 27494.0 17193.0 0 0 0 c 0 12809.0 15846.0 749.0 1493.0 1132.0 1830.0 1073.0 920.0 59571.0 14136.0 16635.0 0 0 0 g 0 14312.0 17235.0 1904.0 61094.0 1487.0 5067.0 2095.0 727.0 1573.0 6209.0 13908.0 0 0 0 t 0 25974.0 20210.0 68456.0 1336.0 70030.0 65236.0 69603.0 1209.0 10463.0 26879.0 26982.0 0 0 0

MA1103.2_rc_shift1 (FOXK2_rc)
; oligos_6nt_mkv3_m4 versus MA1103.2_rc (FOXK2_rc); m=26/34; ncol2=11; w=8; offset=-3; strand=R; shift=1; score=0.431878; -ytTGTTTACwt--- ; cor=; Ncor= a 0 3024.0 4016.0 505.0 1472.0 365.0 565.0 341.0 15782.0 694.0 6197.0 3788.0 0 0 0 c 0 5012.0 3950.0 170.0 426.0 391.0 436.0 148.0 327.0 12737.0 3423.0 3471.0 0 0 0 g 0 3788.0 3877.0 295.0 14282.0 330.0 1291.0 277.0 210.0 551.0 2198.0 2872.0 0 0 0 t 0 4855.0 4836.0 15709.0 499.0 15593.0 14387.0 15913.0 360.0 2697.0 4861.0 6548.0 0 0 0

MA0850.1_rc_shift3 (FOXP3_rc)
; oligos_6nt_mkv3_m4 versus MA0850.1_rc (FOXP3_rc); m=27/34; ncol2=7; w=6; offset=-1; strand=R; shift=3; score=0.427139; ---TGTTTAy----- ; cor=; Ncor= a 0 0 0 0.0 39.0 0.0 8.0 31.0 211.0 0.0 0 0 0 0 0 c 0 0 0 18.0 32.0 49.0 9.0 0.0 0.0 137.0 0 0 0 0 0 g 0 0 0 0.0 211.0 15.0 0.0 0.0 52.0 0.0 0 0 0 0 0 t 0 0 0 211.0 0.0 211.0 211.0 211.0 20.0 74.0 0 0 0 0 0

MA1606.1_rc_shift1 (Foxf1_rc)
; oligos_6nt_mkv3_m4 versus MA1606.1_rc (Foxf1_rc); m=28/34; ncol2=11; w=8; offset=-3; strand=R; shift=1; score=0.418288; -ttTGTTTAywt--- ; cor=; Ncor= a 0 14658.0 13930.0 1916.0 4187.0 831.0 2538.0 903.0 57368.0 3653.0 26418.0 13166.0 0 0 0 c 0 12844.0 14294.0 443.0 522.0 1067.0 811.0 445.0 1158.0 33599.0 8287.0 12462.0 0 0 0 g 0 11715.0 12643.0 745.0 54394.0 475.0 2249.0 899.0 446.0 3754.0 7560.0 10753.0 0 0 0 t 0 20323.0 18673.0 56436.0 437.0 57167.0 53942.0 57293.0 568.0 18534.0 17275.0 23159.0 0 0 0

MA0593.1_rc_shift1 (FOXP2_rc)
; oligos_6nt_mkv3_m4 versus MA0593.1_rc (FOXP2_rc); m=29/34; ncol2=11; w=8; offset=-3; strand=R; shift=1; score=0.417694; -tyTGTTTACwt--- ; cor=; Ncor= a 0 126.0 22.0 0.0 9.0 0.0 0.0 0.0 707.0 0.0 277.0 133.0 0 0 0 c 0 184.0 293.0 0.0 0.0 0.0 0.0 0.0 0.0 606.0 142.0 190.0 0 0 0 g 0 124.0 154.0 0.0 757.0 0.0 0.0 0.0 0.0 0.0 7.0 113.0 0 0 0 t 0 332.0 297.0 766.0 0.0 766.0 766.0 766.0 59.0 160.0 340.0 330.0 0 0 0

MA0848.1_rc_shift3 (FOXO4_rc)
; oligos_6nt_mkv3_m4 versus MA0848.1_rc (FOXO4_rc); m=30/34; ncol2=7; w=6; offset=-1; strand=R; shift=3; score=0.416778; ---TGTTTAC----- ; cor=; Ncor= a 0 0 0 40.0 958.0 10.0 20.0 20.0 5378.0 0.0 0 0 0 0 0 c 0 0 0 10.0 33.0 90.0 19.0 32.0 123.0 5378.0 0 0 0 0 0 g 0 0 0 10.0 5378.0 0.0 146.0 1259.0 69.0 13.0 0 0 0 0 0 t 0 0 0 5378.0 58.0 5378.0 5378.0 5378.0 345.0 1669.0 0 0 0 0 0

MA0148.4_rc_shift0 (FOXA1_rc)
; oligos_6nt_mkv3_m4 versus MA0148.4_rc (FOXA1_rc); m=31/34; ncol2=12; w=8; offset=-4; strand=R; shift=0; score=0.41565; whATGTTTACwt--- ; cor=; Ncor= a 99726.0 85316.0 230183.0 6999.0 37659.0 3793.0 10719.0 5233.0 291718.0 11970.0 137954.0 70922.0 0 0 0 c 70936.0 94376.0 27283.0 3226.0 4805.0 3652.0 3774.0 5243.0 6092.0 281612.0 53682.0 64510.0 0 0 0 g 64037.0 60571.0 23038.0 3674.0 272943.0 2452.0 13410.0 14648.0 13932.0 5935.0 16071.0 53261.0 0 0 0 t 88104.0 82540.0 42299.0 308904.0 7396.0 312906.0 294900.0 297679.0 11061.0 23286.0 115096.0 134110.0 0 0 0

MA0849.1_rc_shift3 (FOXO6_rc)
; oligos_6nt_mkv3_m4 versus MA0849.1_rc (FOXO6_rc); m=32/34; ncol2=7; w=6; offset=-1; strand=R; shift=3; score=0.414193; ---TGTTTAC----- ; cor=; Ncor= a 0 0 0 0.0 385.0 0.0 26.0 0.0 7025.0 0.0 0 0 0 0 0 c 0 0 0 13.0 31.0 0.0 0.0 7.0 32.0 7025.0 0 0 0 0 0 g 0 0 0 0.0 7025.0 0.0 195.0 1147.0 0.0 0.0 0 0 0 0 0 t 0 0 0 7025.0 0.0 7025.0 7025.0 7025.0 154.0 1445.0 0 0 0 0 0

MA0033.2_rc_shift3 (FOXL1_rc)
; oligos_6nt_mkv3_m4 versus MA0033.2_rc (FOXL1_rc); m=33/34; ncol2=7; w=6; offset=-1; strand=R; shift=3; score=0.40833; ---TGTTTAy----- ; cor=; Ncor= a 0 0 0 17.0 1057.0 0.0 15.0 0.0 4780.0 140.0 0 0 0 0 0 c 0 0 0 0.0 0.0 50.0 0.0 57.0 0.0 2678.0 0 0 0 0 0 g 0 0 0 54.0 3723.0 82.0 38.0 628.0 416.0 13.0 0 0 0 0 0 t 0 0 0 4780.0 0.0 4780.0 4780.0 4780.0 10.0 2102.0 0 0 0 0 0

MA0031.1_rc_shift2 (FOXD1_rc)
; oligos_6nt_mkv3_m4 versus MA0031.1_rc (FOXD1_rc); m=34/34; ncol2=8; w=6; offset=-2; strand=R; shift=2; score=0.400389; --wTGTTTAC----- ; cor=; Ncor= a 0 0 8.0 0.0 1.0 0.0 0.0 0.0 20.0 1.0 0 0 0 0 0 c 0 0 3.0 0.0 0.0 1.0 0.0 0.0 0.0 17.0 0 0 0 0 0 g 0 0 2.0 0.0 18.0 1.0 0.0 1.0 0.0 1.0 0 0 0 0 0 t 0 0 7.0 20.0 1.0 18.0 20.0 19.0 0.0 1.0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv4_m2_shift0 ; 14 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv4_m2_shift0 (oligos_7nt_mkv4_m2)
; oligos_7nt_mkv4_m2; m=0 (reference); ncol1=20; shift=0; ncol=20; yyhcATTTGCATaAcAAwrg ; Alignment reference a 177 143 192 159 530 32 74 97 95 43 731 30 446 536 49 635 665 270 225 181 c 203 197 191 360 74 22 99 18 38 698 10 20 75 34 491 48 24 48 85 183 g 183 171 152 104 75 12 43 8 609 5 4 15 144 19 134 24 38 48 363 294 t 194 246 222 134 78 691 541 634 15 11 12 692 92 168 83 50 30 391 84 99

MA0142.1_rc_shift4 (Pou5f1::Sox2_rc)
; oligos_7nt_mkv4_m2 versus MA0142.1_rc (Pou5f1::Sox2_rc); m=1/13; ncol2=15; w=15; offset=4; strand=R; shift=4; score=0.739242; ----aTtTGCATrwsAAwr- ; cor=; Ncor= a 0 0 0 0 837.0 53.0 92.0 269.0 196.0 104.0 1332.0 80.0 612.0 907.0 63.0 1231.0 1270.0 701.0 389.0 0 c 0 0 0 0 207.0 75.0 315.0 30.0 129.0 1239.0 15.0 24.0 186.0 29.0 825.0 79.0 36.0 28.0 66.0 0 g 0 0 0 0 119.0 33.0 68.0 16.0 1029.0 16.0 5.0 30.0 365.0 18.0 363.0 12.0 50.0 58.0 846.0 0 t 0 0 0 0 198.0 1200.0 887.0 1050.0 14.0 10.0 17.0 1235.0 206.0 415.0 118.0 47.0 11.0 579.0 63.0 0

MA0507.1_shift1 (POU2F2)
; oligos_7nt_mkv4_m2 versus MA0507.1 (POU2F2); m=2/13; ncol2=13; w=13; offset=1; strand=D; shift=1; score=0.617062; -ykmATTTGCATrw------ ; cor=; Ncor= a 0 415.0 530.0 605.0 2016.0 0.0 256.0 0.0 158.0 0.0 2257.0 0.0 1159.0 594.0 0 0 0 0 0 0 c 0 635.0 266.0 825.0 19.0 0.0 2.0 0.0 0.0 2271.0 30.0 2.0 39.0 361.0 0 0 0 0 0 0 g 0 402.0 593.0 415.0 1.0 0.0 0.0 0.0 1997.0 0.0 0.0 0.0 613.0 107.0 0 0 0 0 0 0 t 0 835.0 898.0 442.0 251.0 2287.0 2029.0 2287.0 132.0 16.0 0.0 2285.0 476.0 1225.0 0 0 0 0 0 0

MA0784.1_rc_shift1 (POU1F1_rc)
; oligos_7nt_mkv4_m2 versus MA0784.1_rc (POU1F1_rc); m=3/13; ncol2=14; w=14; offset=1; strand=R; shift=1; score=0.598864; -cTmATTwGCATAwt----- ; cor=; Ncor= a 0 547.0 273.0 1287.0 2128.0 3.0 85.0 861.0 536.0 176.0 2128.0 19.0 2128.0 1000.0 397.0 0 0 0 0 0 c 0 2128.0 194.0 840.0 40.0 0.0 82.0 7.0 164.0 2128.0 26.0 32.0 108.0 187.0 273.0 0 0 0 0 0 g 0 479.0 174.0 241.0 37.0 10.0 11.0 12.0 2128.0 11.0 74.0 14.0 83.0 123.0 247.0 0 0 0 0 0 t 0 736.0 2128.0 222.0 76.0 2128.0 2128.0 1267.0 98.0 28.0 45.0 2128.0 276.0 1128.0 1211.0 0 0 0 0 0

MA0627.2_rc_shift2 (POU2F3_rc)
; oligos_7nt_mkv4_m2 versus MA0627.2_rc (POU2F3_rc); m=4/13; ncol2=13; w=13; offset=2; strand=R; shift=2; score=0.596426; --wwATTTGCATatw----- ; cor=; Ncor= a 0 0 17245.0 15909.0 43338.0 330.0 3276.0 896.0 3716.0 2827.0 53366.0 931.0 37593.0 13775.0 16525.0 0 0 0 0 0 c 0 0 7941.0 13237.0 4098.0 233.0 804.0 138.0 1079.0 51971.0 1251.0 354.0 3029.0 8770.0 10722.0 0 0 0 0 0 g 0 0 11936.0 10595.0 3478.0 164.0 567.0 80.0 50288.0 251.0 322.0 194.0 6885.0 6824.0 11383.0 0 0 0 0 0 t 0 0 18907.0 16288.0 5115.0 55302.0 51382.0 54915.0 946.0 980.0 1090.0 54550.0 8522.0 26660.0 17399.0 0 0 0 0 0

MA0786.1_rc_shift2 (POU3F1_rc)
; oligos_7nt_mkv4_m2 versus MA0786.1_rc (POU3F1_rc); m=5/13; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.56263; --wmATTwrCATAw------ ; cor=; Ncor= a 0 0 961.0 1167.0 2471.0 63.0 284.0 1048.0 1119.0 232.0 2471.0 21.0 2471.0 1437.0 0 0 0 0 0 0 c 0 0 452.0 620.0 128.0 25.0 130.0 21.0 413.0 2471.0 21.0 26.0 128.0 322.0 0 0 0 0 0 0 g 0 0 478.0 302.0 95.0 20.0 103.0 1.0 2471.0 13.0 53.0 7.0 186.0 126.0 0 0 0 0 0 0 t 0 0 1510.0 382.0 259.0 2471.0 2471.0 1423.0 170.0 37.0 44.0 2471.0 505.0 1034.0 0 0 0 0 0 0

MA0788.1_rc_shift2 (POU3F3_rc)
; oligos_7nt_mkv4_m2 versus MA0788.1_rc (POU3F3_rc); m=6/13; ncol2=13; w=13; offset=2; strand=R; shift=2; score=0.554058; --waATTwGCATAww----- ; cor=; Ncor= a 0 0 542.0 1078.0 1078.0 14.0 79.0 572.0 343.0 86.0 1078.0 30.0 1078.0 637.0 290.0 0 0 0 0 0 c 0 0 115.0 237.0 12.0 15.0 77.0 1.0 118.0 1078.0 49.0 12.0 64.0 131.0 137.0 0 0 0 0 0 g 0 0 85.0 141.0 20.0 6.0 11.0 4.0 1078.0 10.0 33.0 11.0 57.0 41.0 75.0 0 0 0 0 0 t 0 0 536.0 240.0 53.0 1078.0 1078.0 506.0 28.0 22.0 25.0 1078.0 129.0 440.0 576.0 0 0 0 0 0

MA0787.1_rc_shift2 (POU3F2_rc)
; oligos_7nt_mkv4_m2 versus MA0787.1_rc (POU3F2_rc); m=7/13; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.553028; --tmATTwGCATAw------ ; cor=; Ncor= a 0 0 562.0 840.0 1292.0 13.0 45.0 604.0 372.0 60.0 1292.0 0.0 1292.0 700.0 0 0 0 0 0 0 c 0 0 261.0 452.0 28.0 0.0 32.0 1.0 153.0 1292.0 12.0 25.0 40.0 171.0 0 0 0 0 0 0 g 0 0 262.0 165.0 19.0 6.0 16.0 4.0 1292.0 9.0 30.0 16.0 65.0 61.0 0 0 0 0 0 0 t 0 0 1292.0 137.0 63.0 1292.0 1292.0 688.0 68.0 19.0 28.0 1292.0 163.0 591.0 0 0 0 0 0 0

MA0785.1_rc_shift3 (POU2F1_rc)
; oligos_7nt_mkv4_m2 versus MA0785.1_rc (POU2F1_rc); m=8/13; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.542221; ---aATTwgCATAwt----- ; cor=; Ncor= a 0 0 0 4262.0 10582.0 158.0 787.0 3651.0 3375.0 1326.0 10582.0 43.0 10582.0 5231.0 2075.0 0 0 0 0 0 c 0 0 0 2504.0 755.0 51.0 879.0 46.0 1351.0 10582.0 213.0 29.0 474.0 2142.0 1494.0 0 0 0 0 0 g 0 0 0 1840.0 457.0 37.0 108.0 33.0 10582.0 82.0 501.0 12.0 1347.0 1046.0 1938.0 0 0 0 0 0 t 0 0 0 1976.0 1422.0 10582.0 10582.0 6932.0 300.0 186.0 153.0 10582.0 756.0 5351.0 5076.0 0 0 0 0 0

MA1115.1_rc_shift3 (POU5F1_rc)
; oligos_7nt_mkv4_m2 versus MA1115.1_rc (POU5F1_rc); m=9/13; ncol2=11; w=11; offset=3; strand=R; shift=3; score=0.526103; ---haTTTGCATww------ ; cor=; Ncor= a 0 0 0 3637.0 6383.0 307.0 838.0 1108.0 1723.0 634.0 12834.0 70.0 4818.0 4846.0 0 0 0 0 0 0 c 0 0 0 3551.0 2071.0 257.0 1026.0 118.0 548.0 11571.0 67.0 229.0 1908.0 1996.0 0 0 0 0 0 0 g 0 0 0 2450.0 2104.0 270.0 690.0 132.0 10310.0 192.0 130.0 122.0 2785.0 1290.0 0 0 0 0 0 0 t 0 0 0 3476.0 2556.0 12280.0 10560.0 11756.0 533.0 717.0 83.0 12693.0 3603.0 4982.0 0 0 0 0 0 0

MA0043.3_rc_shift3 (HLF_rc)
; oligos_7nt_mkv4_m2 versus MA0043.3_rc (HLF_rc); m=10/13; ncol2=14; w=14; offset=3; strand=R; shift=3; score=0.512222; ---wkrTTRCATAAyhw--- ; cor=; Ncor= a 0 0 0 6732.0 5897.0 6488.0 113.0 98.0 6653.0 189.0 22426.0 209.0 23271.0 23739.0 1410.0 7927.0 6925.0 0 0 0 c 0 0 0 5523.0 3218.0 3300.0 189.0 48.0 199.0 21705.0 253.0 1344.0 895.0 148.0 9793.0 6297.0 5626.0 0 0 0 g 0 0 0 5267.0 6412.0 13237.0 67.0 122.0 17203.0 112.0 1548.0 125.0 96.0 242.0 4432.0 4009.0 5063.0 0 0 0 t 0 0 0 6902.0 8897.0 1399.0 24055.0 24156.0 369.0 2418.0 197.0 22746.0 162.0 295.0 8789.0 6191.0 6810.0 0 0 0

MA0025.2_rc_shift3 (NFIL3_rc)
; oligos_7nt_mkv4_m2 versus MA0025.2_rc (NFIL3_rc); m=11/13; ncol2=13; w=13; offset=3; strand=R; shift=3; score=0.486003; ---wtaTTrCATAAyw---- ; cor=; Ncor= a 0 0 0 6893.0 5543.0 13143.0 474.0 434.0 9180.0 610.0 20334.0 433.0 20606.0 20927.0 2798.0 7109.0 0 0 0 0 c 0 0 0 4482.0 4152.0 2701.0 360.0 171.0 454.0 20459.0 492.0 990.0 1714.0 518.0 7261.0 5615.0 0 0 0 0 g 0 0 0 4929.0 5630.0 4959.0 251.0 543.0 12004.0 467.0 1511.0 220.0 208.0 681.0 3896.0 3904.0 0 0 0 0 t 0 0 0 6692.0 7671.0 2193.0 21911.0 21848.0 1358.0 1460.0 659.0 21353.0 468.0 870.0 9041.0 6368.0 0 0 0 0

MA0792.1_rc_shift4 (POU5F1B_rc)
; oligos_7nt_mkv4_m2 versus MA0792.1_rc (POU5F1B_rc); m=12/13; ncol2=9; w=9; offset=4; strand=R; shift=4; score=0.438542; ----ATTwrCATA------- ; cor=; Ncor= a 0 0 0 0 9519.0 203.0 896.0 3220.0 3828.0 1790.0 9519.0 84.0 9519.0 0 0 0 0 0 0 0 c 0 0 0 0 750.0 97.0 856.0 65.0 1293.0 9519.0 206.0 67.0 808.0 0 0 0 0 0 0 0 g 0 0 0 0 537.0 65.0 144.0 51.0 9519.0 94.0 364.0 21.0 1778.0 0 0 0 0 0 0 0 t 0 0 0 0 1559.0 9519.0 9519.0 6299.0 398.0 322.0 171.0 9519.0 1326.0 0 0 0 0 0 0 0

MA0789.1_rc_shift4 (POU3F4_rc)
; oligos_7nt_mkv4_m2 versus MA0789.1_rc (POU3F4_rc); m=13/13; ncol2=9; w=9; offset=4; strand=R; shift=4; score=0.433647; ----ATTwGCATA------- ; cor=; Ncor= a 0 0 0 0 11117.0 168.0 885.0 4670.0 2565.0 245.0 11117.0 26.0 11117.0 0 0 0 0 0 0 0 c 0 0 0 0 292.0 88.0 315.0 56.0 602.0 11117.0 24.0 68.0 136.0 0 0 0 0 0 0 0 g 0 0 0 0 247.0 47.0 332.0 10.0 11117.0 19.0 59.0 23.0 349.0 0 0 0 0 0 0 0 t 0 0 0 0 705.0 11117.0 11117.0 6447.0 136.0 53.0 59.0 11117.0 941.0 0 0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv4_m5_shift2 ; 18 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv4_m5_shift2 (oligos_7nt_mkv4_m5)
; oligos_7nt_mkv4_m5; m=0 (reference); ncol1=15; shift=2; ncol=17; --ccCCCCCaCCCCccc ; Alignment reference a 0 0 226 200 93 53 52 38 48 668 45 52 41 64 168 275 216 c 0 0 495 461 803 916 950 983 972 201 983 966 954 934 656 428 483 g 0 0 182 251 103 68 67 63 56 154 51 56 66 67 155 215 214 t 0 0 212 203 116 78 46 31 39 92 36 41 54 50 136 197 202

MA0039.4_shift3 (KLF4)
; oligos_7nt_mkv4_m5 versus MA0039.4 (KLF4); m=1/17; ncol2=12; w=12; offset=1; strand=D; shift=3; score=0.721001; ---ssCCCCACCChs-- ; cor=; Ncor= a 0 0 0 12570.0 11487.0 2465.0 2105.0 7021.0 1173.0 45602.0 852.0 1617.0 1202.0 16264.0 9959.0 0 0 c 0 0 0 17520.0 14038.0 49209.0 47865.0 45405.0 52875.0 161.0 52366.0 51112.0 51045.0 18249.0 19217.0 0 0 g 0 0 0 14243.0 18473.0 1583.0 1214.0 1422.0 793.0 6598.0 1470.0 1870.0 1005.0 6292.0 14422.0 0 0 t 0 0 0 11484.0 11819.0 2560.0 4633.0 1969.0 976.0 3456.0 1129.0 1218.0 2565.0 15012.0 12219.0 0 0

MA1653.1_shift3 (ZNF148)
; oligos_7nt_mkv4_m5 versus MA1653.1 (ZNF148); m=2/17; ncol2=12; w=12; offset=1; strand=D; shift=3; score=0.692213; ---ysCCCCTCCCcc-- ; cor=; Ncor= a 0 0 0 1399.0 1263.0 82.0 132.0 136.0 89.0 133.0 66.0 352.0 442.0 846.0 841.0 0 0 c 0 0 0 4593.0 4057.0 10799.0 10396.0 10526.0 10833.0 14.0 10954.0 9922.0 9283.0 7239.0 7114.0 0 0 g 0 0 0 2241.0 3215.0 205.0 471.0 401.0 211.0 1012.0 112.0 460.0 392.0 1924.0 2064.0 0 0 t 0 0 0 2966.0 2664.0 113.0 200.0 136.0 66.0 10040.0 67.0 465.0 1082.0 1190.0 1180.0 0 0

MA0753.2_shift3 (ZNF740)
; oligos_7nt_mkv4_m5 versus MA0753.2 (ZNF740); m=3/17; ncol2=13; w=13; offset=1; strand=D; shift=3; score=0.672695; ---cyrCCCCCCCCAc- ; cor=; Ncor= a 0 0 0 186.0 162.0 727.0 60.0 110.0 18.0 22.0 23.0 10.0 2.0 115.0 1055.0 207.0 0 c 0 0 0 502.0 677.0 343.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 239.0 1055.0 0 g 0 0 0 182.0 72.0 1055.0 37.0 14.0 4.0 7.0 3.0 7.0 3.0 6.0 68.0 54.0 0 t 0 0 0 185.0 378.0 312.0 49.0 1.0 16.0 15.0 11.0 6.0 3.0 4.0 134.0 246.0 0

MA0516.2_shift0 (SP2)
; oligos_7nt_mkv4_m5 versus MA0516.2 (SP2); m=4/17; ncol2=17; w=15; offset=-2; strand=D; shift=0; score=0.618282; mTAAGyCCCGCCCmCyy ; cor=; Ncor= a 256.0 53.0 613.0 753.0 54.0 34.0 14.0 16.0 4.0 82.0 0.0 5.0 23.0 402.0 22.0 109.0 150.0 c 308.0 171.0 76.0 84.0 127.0 456.0 774.0 786.0 788.0 52.0 795.0 793.0 774.0 390.0 679.0 221.0 203.0 g 123.0 57.0 0.0 33.0 791.0 8.0 1.0 13.0 22.0 780.0 0.0 26.0 0.0 22.0 1.0 0.0 88.0 t 106.0 608.0 180.0 67.0 43.0 327.0 0.0 8.0 12.0 45.0 18.0 7.0 27.0 17.0 101.0 503.0 352.0

MA1513.1_shift4 (KLF15)
; oligos_7nt_mkv4_m5 versus MA1513.1 (KLF15); m=5/17; ncol2=11; w=11; offset=2; strand=D; shift=4; score=0.599178; ----scCCCGCCCcs-- ; cor=; Ncor= a 0 0 0 0 1184.0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 1566.0 1067.0 0 0 c 0 0 0 0 2903.0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 6267.0 5013.0 0 0 g 0 0 0 0 5538.0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 1934.0 3124.0 0 0 t 0 0 0 0 1744.0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 1602.0 2165.0 0 0

MA1522.1_shift3 (MAZ)
; oligos_7nt_mkv4_m5 versus MA1522.1 (MAZ); m=6/17; ncol2=11; w=11; offset=1; strand=D; shift=3; score=0.595647; ---ssCCCCTCCcc--- ; cor=; Ncor= a 0 0 0 2480.0 1819.0 17.0 49.0 36.0 39.0 6.0 90.0 23.0 1109.0 2016.0 0 0 0 c 0 0 0 5198.0 5068.0 14945.0 14630.0 14731.0 14676.0 0.0 14961.0 14944.0 9372.0 6775.0 0 0 0 g 0 0 0 4277.0 5163.0 75.0 384.0 290.0 347.0 130.0 8.0 96.0 1768.0 2539.0 0 0 0 t 0 0 0 3108.0 3013.0 26.0 0.0 6.0 1.0 14927.0 4.0 0.0 2814.0 3733.0 0 0 0

MA1564.1_shift4 (SP9)
; oligos_7nt_mkv4_m5 versus MA1564.1 (SP9); m=7/17; ncol2=12; w=12; offset=2; strand=D; shift=4; score=0.58777; ----rcCmCGCCCmcy- ; cor=; Ncor= a 0 0 0 0 834.0 566.0 321.0 2451.0 2.0 211.0 22.0 0.0 39.0 1192.0 188.0 420.0 0 c 0 0 0 0 440.0 2451.0 2451.0 1127.0 2451.0 200.0 2451.0 2451.0 2451.0 1259.0 1863.0 1167.0 0 g 0 0 0 0 952.0 309.0 113.0 56.0 17.0 2451.0 0.0 0.0 24.0 38.0 191.0 204.0 0 t 0 0 0 0 226.0 518.0 284.0 96.0 9.0 173.0 14.0 30.0 412.0 353.0 588.0 660.0 0

MA0162.4_shift1 (EGR1)
; oligos_7nt_mkv4_m5 versus MA0162.4 (EGR1); m=8/17; ncol2=14; w=13; offset=-1; strand=D; shift=1; score=0.57969; -ccmCGCCCACgCms-- ; cor=; Ncor= a 0 7087.0 3997.0 14508.0 642.0 5110.0 227.0 1440.0 314.0 22297.0 153.0 4696.0 969.0 8903.0 3809.0 0 0 c 0 11610.0 14749.0 10303.0 28403.0 1131.0 29338.0 27321.0 28958.0 5420.0 29507.0 2806.0 25196.0 10441.0 13686.0 0 0 g 0 6621.0 7211.0 3854.0 756.0 22237.0 665.0 1455.0 698.0 2122.0 699.0 20544.0 2157.0 6345.0 7852.0 0 0 t 0 5280.0 4641.0 1933.0 797.0 2120.0 368.0 382.0 628.0 759.0 239.0 2552.0 2276.0 4909.0 5251.0 0 0

MA0599.1_shift4 (KLF5)
; oligos_7nt_mkv4_m5 versus MA0599.1 (KLF5); m=9/17; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.577291; ----gCCMCrCCCh--- ; cor=; Ncor= a 0 0 0 0 1429.0 0.0 0.0 3477.0 0.0 5051.0 0.0 0.0 0.0 3915.0 0 0 0 c 0 0 0 0 2023.0 11900.0 12008.0 9569.0 13611.0 0.0 13611.0 13611.0 13135.0 5595.0 0 0 0 g 0 0 0 0 7572.0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 0.0 0 0 0 t 0 0 0 0 2587.0 1711.0 1603.0 565.0 0.0 3378.0 0.0 0.0 476.0 4101.0 0 0 0

MA0741.1_shift4 (KLF16)
; oligos_7nt_mkv4_m5 versus MA0741.1 (KLF16); m=10/17; ncol2=11; w=11; offset=2; strand=D; shift=4; score=0.574497; ----gmCMCgCCCMC-- ; cor=; Ncor= a 0 0 0 0 666.0 901.0 62.0 1150.0 66.0 497.0 8.0 2.0 16.0 437.0 32.0 0 0 c 0 0 0 0 535.0 1612.0 1612.0 461.0 1612.0 173.0 1612.0 1612.0 1612.0 1175.0 1612.0 0 0 g 0 0 0 0 1612.0 77.0 6.0 32.0 17.0 1612.0 0.0 8.0 3.0 19.0 23.0 0 0 t 0 0 0 0 240.0 116.0 45.0 0.0 19.0 403.0 0.0 0.0 97.0 40.0 370.0 0 0

MA0747.1_shift4 (SP8)
; oligos_7nt_mkv4_m5 versus MA0747.1 (SP8); m=11/17; ncol2=12; w=12; offset=2; strand=D; shift=4; score=0.560344; ----rmCACgCCCmCy- ; cor=; Ncor= a 0 0 0 0 52.0 54.0 25.0 133.0 7.0 25.0 5.0 2.0 0.0 90.0 13.0 31.0 0 c 0 0 0 0 27.0 113.0 167.0 33.0 167.0 37.0 167.0 167.0 167.0 77.0 167.0 52.0 0 g 0 0 0 0 78.0 0.0 0.0 1.0 1.0 167.0 6.0 3.0 4.0 6.0 21.0 1.0 0 t 0 0 0 0 10.0 4.0 13.0 2.0 5.0 39.0 2.0 0.0 15.0 3.0 39.0 82.0 0

MA1515.1_shift3 (KLF2)
; oligos_7nt_mkv4_m5 versus MA1515.1 (KLF2); m=12/17; ncol2=11; w=11; offset=1; strand=D; shift=3; score=0.559873; ---srCCmCrCCCw--- ; cor=; Ncor= a 0 0 0 1054.0 2510.0 741.0 403.0 4622.0 0.0 1702.0 0.0 128.0 68.0 1838.0 0 0 0 c 0 0 0 1376.0 1103.0 4622.0 4622.0 2265.0 4622.0 274.0 4622.0 4622.0 4622.0 1142.0 0 0 0 g 0 0 0 1320.0 2112.0 495.0 186.0 1060.0 0.0 2920.0 49.0 195.0 105.0 389.0 0 0 0 t 0 0 0 872.0 433.0 346.0 312.0 214.0 78.0 167.0 22.0 9.0 444.0 1253.0 0 0 0

MA1511.1_shift4 (KLF10)
; oligos_7nt_mkv4_m5 versus MA1511.1 (KLF10); m=13/17; ncol2=11; w=11; offset=2; strand=D; shift=4; score=0.540226; ----gmCACrCCCmy-- ; cor=; Ncor= a 0 0 0 0 4746.0 6633.0 633.0 18751.0 238.0 13506.0 1.0 0.0 0.0 7545.0 934.0 0 0 c 0 0 0 0 2435.0 12654.0 19619.0 1663.0 19907.0 11.0 19995.0 19994.0 19244.0 11403.0 13118.0 0 0 g 0 0 0 0 14086.0 1299.0 98.0 1723.0 3.0 6234.0 2.0 0.0 0.0 587.0 770.0 0 0 t 0 0 0 0 1251.0 1373.0 485.0 6.0 157.0 543.0 0.0 0.0 2198.0 2686.0 6274.0 0 0

MA1512.1_shift6 (KLF11)
; oligos_7nt_mkv4_m5 versus MA1512.1 (KLF11); m=14/17; ncol2=11; w=11; offset=4; strand=D; shift=6; score=0.527784; ------gcCACGCCCmC ; cor=; Ncor= a 0 0 0 0 0 0 1882.0 2022.0 650.0 8655.0 0.0 2426.0 11.0 1.0 0.0 4689.0 581.0 c 0 0 0 0 0 0 2054.0 5549.0 8662.0 1289.0 9142.0 52.0 9161.0 9166.0 8941.0 4226.0 8403.0 g 0 0 0 0 0 0 3930.0 401.0 156.0 115.0 0.0 8291.0 18.0 20.0 4.0 69.0 358.0 t 0 0 0 0 0 0 1299.0 1192.0 506.0 27.0 38.0 349.0 23.0 7.0 885.0 761.0 1281.0

MA1630.1_rc_shift1 (Znf281_rc)
; oligos_7nt_mkv4_m5 versus MA1630.1_rc (Znf281_rc); m=15/17; ncol2=11; w=10; offset=-1; strand=R; shift=1; score=0.525323; -CcTCCCCCAcc----- ; cor=; Ncor= a 0 315.0 1103.0 11.0 52.0 29.0 23.0 24.0 12.0 6298.0 745.0 954.0 0 0 0 0 0 c 0 5523.0 4312.0 8.0 6457.0 6402.0 6378.0 6356.0 6449.0 29.0 3751.0 3539.0 0 0 0 0 0 g 0 356.0 418.0 45.0 41.0 115.0 131.0 163.0 88.0 233.0 1076.0 878.0 0 0 0 0 0 t 0 374.0 735.0 6504.0 18.0 22.0 36.0 25.0 19.0 8.0 996.0 1197.0 0 0 0 0 0

MA1627.1_shift5 (Wt1)
; oligos_7nt_mkv4_m5 versus MA1627.1 (Wt1); m=16/17; ncol2=14; w=12; offset=3; strand=D; shift=5; score=0.523312; -----cycCTCCCCCAC ; cor=; Ncor= a 0 0 0 0 0 876.0 667.0 839.0 48.0 120.0 21.0 40.0 43.0 850.0 31.0 3294.0 158.0 c 0 0 0 0 0 1881.0 1630.0 2948.0 4546.0 69.0 4602.0 4354.0 4252.0 3636.0 4573.0 53.0 3749.0 g 0 0 0 0 0 794.0 1161.0 404.0 58.0 319.0 42.0 75.0 120.0 101.0 46.0 990.0 436.0 t 0 0 0 0 0 1140.0 1233.0 500.0 39.0 4183.0 26.0 222.0 276.0 104.0 41.0 354.0 348.0

MA1578.1_shift7 (VEZF1)
; oligos_7nt_mkv4_m5 versus MA1578.1 (VEZF1); m=17/17; ncol2=10; w=10; offset=5; strand=D; shift=7; score=0.519482; -------CCCCCCmytw ; cor=; Ncor= a 0 0 0 0 0 0 0 71.0 1.0 4.0 2.0 6.0 10.0 406.0 44.0 240.0 333.0 c 0 0 0 0 0 0 0 790.0 997.0 995.0 997.0 989.0 977.0 357.0 550.0 171.0 173.0 g 0 0 0 0 0 0 0 137.0 0.0 0.0 0.0 0.0 3.0 110.0 70.0 211.0 152.0 t 0 0 0 0 0 0 0 0.0 0.0 0.0 0.0 4.0 8.0 125.0 334.0 377.0 339.0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv3_m5_shift5 ; 23 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv3_m5_shift5 (oligos_6nt_mkv3_m5)
; oligos_6nt_mkv3_m5; m=0 (reference); ncol1=14; shift=5; ncol=19; -----amaAAACAAAGcma ; Alignment reference a 0 0 0 0 0 265 218 421 586 628 671 13 688 646 649 124 171 263 273 c 0 0 0 0 0 119 225 95 25 34 9 643 10 30 16 62 335 187 152 g 0 0 0 0 0 178 148 95 24 29 28 32 8 25 24 492 127 139 151 t 0 0 0 0 0 155 126 106 82 26 9 29 11 16 28 39 84 128 141

MA0442.2_shift7 (SOX10)
; oligos_6nt_mkv3_m5 versus MA0442.2 (SOX10); m=1/22; ncol2=11; w=11; offset=2; strand=D; shift=7; score=0.719035; -------rraACAAAGvm- ; cor=; Ncor= a 0 0 0 0 0 0 0 683.0 723.0 1118.0 2023.0 3.0 2029.0 1968.0 1959.0 10.0 666.0 638.0 0 c 0 0 0 0 0 0 0 397.0 283.0 372.0 4.0 1989.0 7.0 28.0 23.0 13.0 552.0 555.0 0 g 0 0 0 0 0 0 0 527.0 571.0 317.0 3.0 11.0 7.0 20.0 12.0 2012.0 619.0 505.0 0 t 0 0 0 0 0 0 0 448.0 478.0 248.0 25.0 52.0 12.0 39.0 61.0 20.0 218.0 357.0 0

MA0514.1_rc_shift7 (Sox3_rc)
; oligos_6nt_mkv3_m5 versus MA0514.1_rc (Sox3_rc); m=2/22; ncol2=10; w=10; offset=2; strand=R; shift=7; score=0.638326; -------rrrACAAAGG-- ; cor=; Ncor= a 0 0 0 0 0 0 0 989.0 1173.0 1115.0 2067.0 0.0 2067.0 2067.0 1805.0 515.0 250.0 0 0 c 0 0 0 0 0 0 0 382.0 22.0 254.0 0.0 1923.0 0.0 0.0 0.0 0.0 330.0 0 0 g 0 0 0 0 0 0 0 654.0 853.0 698.0 0.0 144.0 0.0 0.0 0.0 1552.0 1487.0 0 0 t 0 0 0 0 0 0 0 42.0 19.0 0.0 0.0 0.0 0.0 0.0 262.0 0.0 0.0 0 0

MA0867.2_shift8 (SOX4)
; oligos_6nt_mkv3_m5 versus MA0867.2 (SOX4); m=3/22; ncol2=10; w=10; offset=3; strand=D; shift=8; score=0.628273; --------gaACAAwGrv- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 3190.0 5582.0 5582.0 0.0 5582.0 5582.0 5582.0 1018.0 2093.0 1775.0 0 c 0 0 0 0 0 0 0 0 1771.0 951.0 0.0 5582.0 1.0 6.0 120.0 64.0 1422.0 1438.0 0 g 0 0 0 0 0 0 0 0 5582.0 2047.0 0.0 37.0 6.0 11.0 50.0 5582.0 3489.0 1889.0 0 t 0 0 0 0 0 0 0 0 2286.0 431.0 9.0 33.0 0.0 0.0 2719.0 83.0 174.0 480.0 0

MA0515.1_rc_shift7 (Sox6_rc)
; oligos_6nt_mkv3_m5 versus MA0515.1_rc (Sox6_rc); m=4/22; ncol2=10; w=10; offset=2; strand=R; shift=7; score=0.587115; -------rrrACAAwGg-- ; cor=; Ncor= a 0 0 0 0 0 0 0 128.0 133.0 129.0 249.0 0.0 249.0 249.0 88.0 28.0 56.0 0 0 c 0 0 0 0 0 0 0 31.0 0.0 5.0 0.0 249.0 0.0 0.0 0.0 0.0 50.0 0 0 g 0 0 0 0 0 0 0 76.0 112.0 115.0 0.0 0.0 0.0 0.0 0.0 221.0 139.0 0 0 t 0 0 0 0 0 0 0 14.0 4.0 0.0 0.0 0.0 0.0 0.0 161.0 0.0 4.0 0 0

MA1152.1_rc_shift7 (SOX15_rc)
; oligos_6nt_mkv3_m5 versus MA1152.1_rc (SOX15_rc); m=5/22; ncol2=10; w=10; offset=2; strand=R; shift=7; score=0.578007; -------araACAAwrr-- ; cor=; Ncor= a 0 0 0 0 0 0 0 407.0 418.0 506.0 971.0 5.0 994.0 988.0 362.0 501.0 267.0 0 0 c 0 0 0 0 0 0 0 165.0 114.0 125.0 3.0 890.0 2.0 6.0 5.0 26.0 147.0 0 0 g 0 0 0 0 0 0 0 188.0 253.0 188.0 2.0 21.0 2.0 3.0 3.0 412.0 554.0 0 0 t 0 0 0 0 0 0 0 241.0 215.0 180.0 24.0 83.0 3.0 3.0 631.0 62.0 32.0 0 0

MA0851.1_shift1 (Foxj3)
; oligos_6nt_mkv3_m5 versus MA0851.1 (Foxj3); m=6/22; ncol2=17; w=13; offset=-4; strand=D; shift=1; score=0.565815; -hraarRTAAACAAwsmc- ; cor=; Ncor= a 0 27.0 34.0 48.0 51.0 35.0 30.0 1.0 91.0 96.0 99.0 0.0 99.0 79.0 57.0 22.0 27.0 24.0 0 c 0 26.0 13.0 19.0 13.0 13.0 1.0 2.0 8.0 2.0 0.0 81.0 0.0 7.0 9.0 34.0 27.0 39.0 0 g 0 21.0 31.0 16.0 17.0 33.0 68.0 0.0 0.0 0.0 0.0 0.0 0.0 6.0 7.0 26.0 24.0 17.0 0 t 0 26.0 22.0 17.0 19.0 20.0 0.0 97.0 0.0 3.0 1.0 18.0 1.0 9.0 27.0 18.0 22.0 19.0 0

MA0084.1_shift6 (SRY)
; oligos_6nt_mkv3_m5 versus MA0084.1 (SRY); m=7/22; ncol2=9; w=9; offset=1; strand=D; shift=6; score=0.530049; ------kwwaACAAw---- ; cor=; Ncor= a 0 0 0 0 0 0 5.0 8.0 15.0 18.0 25.0 0.0 28.0 27.0 7.0 0 0 0 0 c 0 0 0 0 0 0 5.0 3.0 0.0 3.0 0.0 26.0 0.0 0.0 0.0 0 0 0 0 g 0 0 0 0 0 0 10.0 4.0 3.0 3.0 0.0 0.0 0.0 1.0 2.0 0 0 0 0 t 0 0 0 0 0 0 8.0 13.0 10.0 4.0 3.0 2.0 0.0 0.0 19.0 0 0 0 0

MA1125.1_shift4 (ZNF384)
; oligos_6nt_mkv3_m5 versus MA1125.1 (ZNF384); m=8/22; ncol2=12; w=11; offset=-1; strand=D; shift=4; score=0.527177; ----wwwmAAAAAAaa--- ; cor=; Ncor= a 0 0 0 0 9460.0 9116.0 9522.0 13125.0 30354.0 30191.0 30072.0 30252.0 30202.0 30406.0 20322.0 18916.0 0 0 0 c 0 0 0 0 4945.0 7025.0 3456.0 7691.0 7.0 35.0 21.0 13.0 26.0 6.0 2908.0 3963.0 0 0 0 g 0 0 0 0 5650.0 5133.0 4678.0 4721.0 13.0 19.0 26.0 15.0 14.0 0.0 2767.0 2898.0 0 0 0 t 0 0 0 0 10378.0 9159.0 12777.0 4896.0 59.0 188.0 314.0 153.0 191.0 21.0 4436.0 4656.0 0 0 0

MA0868.2_shift7 (SOX8)
; oligos_6nt_mkv3_m5 versus MA0868.2 (SOX8); m=9/22; ncol2=10; w=10; offset=2; strand=D; shift=7; score=0.527117; -------agAACAATrg-- ; cor=; Ncor= a 0 0 0 0 0 0 0 1827.0 740.0 1827.0 1827.0 3.0 1827.0 1827.0 273.0 1356.0 300.0 0 0 c 0 0 0 0 0 0 0 1124.0 414.0 151.0 0.0 1827.0 0.0 43.0 36.0 208.0 421.0 0 0 g 0 0 0 0 0 0 0 854.0 1827.0 263.0 0.0 35.0 0.0 0.0 20.0 1827.0 912.0 0 0 t 0 0 0 0 0 0 0 724.0 571.0 222.0 45.0 70.0 16.0 36.0 1827.0 287.0 193.0 0 0

MA0593.1_shift4 (FOXP2)
; oligos_6nt_mkv3_m5 versus MA0593.1 (FOXP2); m=10/22; ncol2=11; w=10; offset=-1; strand=D; shift=4; score=0.506249; ----awGTAAACAra---- ; cor=; Ncor= a 0 0 0 0 330.0 340.0 160.0 59.0 766.0 766.0 766.0 0.0 766.0 297.0 332.0 0 0 0 0 c 0 0 0 0 113.0 7.0 0.0 0.0 0.0 0.0 0.0 757.0 0.0 154.0 124.0 0 0 0 0 g 0 0 0 0 190.0 142.0 606.0 0.0 0.0 0.0 0.0 0.0 0.0 293.0 184.0 0 0 0 0 t 0 0 0 0 133.0 277.0 0.0 707.0 0.0 0.0 0.0 9.0 0.0 22.0 126.0 0 0 0 0

MA1606.1_shift4 (Foxf1)
; oligos_6nt_mkv3_m5 versus MA1606.1 (Foxf1); m=11/22; ncol2=11; w=10; offset=-1; strand=D; shift=4; score=0.486528; ----awrTAAACAaa---- ; cor=; Ncor= a 0 0 0 0 23159.0 17275.0 18534.0 568.0 57293.0 53942.0 57167.0 437.0 56436.0 18673.0 20323.0 0 0 0 0 c 0 0 0 0 10753.0 7560.0 3754.0 446.0 899.0 2249.0 475.0 54394.0 745.0 12643.0 11715.0 0 0 0 0 g 0 0 0 0 12462.0 8287.0 33599.0 1158.0 445.0 811.0 1067.0 522.0 443.0 14294.0 12844.0 0 0 0 0 t 0 0 0 0 13166.0 26418.0 3653.0 57368.0 903.0 2538.0 831.0 4187.0 1916.0 13930.0 14658.0 0 0 0 0

MA0846.1_shift3 (FOXC2)
; oligos_6nt_mkv3_m5 versus MA0846.1 (FOXC2); m=12/22; ncol2=12; w=10; offset=-2; strand=D; shift=3; score=0.485664; ---wAwrTAAAYAww---- ; cor=; Ncor= a 0 0 0 8939.0 20456.0 11301.0 6418.0 2005.0 20456.0 20456.0 20456.0 31.0 20456.0 13296.0 10995.0 0 0 0 0 c 0 0 0 1279.0 1652.0 3476.0 440.0 3773.0 6759.0 344.0 105.0 14435.0 101.0 2087.0 3080.0 0 0 0 0 g 0 0 0 454.0 5093.0 3129.0 14038.0 321.0 87.0 81.0 279.0 68.0 328.0 1710.0 2649.0 0 0 0 0 t 0 0 0 11517.0 2080.0 9155.0 136.0 20456.0 122.0 107.0 242.0 6021.0 215.0 7160.0 9461.0 0 0 0 0

MA0614.1_shift6 (Foxj2)
; oligos_6nt_mkv3_m5 versus MA0614.1 (Foxj2); m=13/22; ncol2=8; w=8; offset=1; strand=D; shift=6; score=0.472946; ------rTAAACAa----- ; cor=; Ncor= a 0 0 0 0 0 0 461.0 50.0 795.0 977.0 999.0 0.0 999.0 593.0 0 0 0 0 0 c 0 0 0 0 0 0 0.0 25.0 205.0 0.0 0.0 954.0 0.0 125.0 0 0 0 0 0 g 0 0 0 0 0 0 538.0 0.0 0.0 0.0 0.0 0.0 0.0 125.0 0 0 0 0 0 t 0 0 0 0 0 0 0.0 924.0 0.0 22.0 0.0 46.0 0.0 156.0 0 0 0 0 0

MA1489.1_shift6 (FOXN3)
; oligos_6nt_mkv3_m5 versus MA1489.1 (FOXN3); m=14/22; ncol2=8; w=8; offset=1; strand=D; shift=6; score=0.463516; ------GTAAACAA----- ; cor=; Ncor= a 0 0 0 0 0 0 9.0 9.0 971.0 971.0 971.0 9.0 971.0 971.0 0 0 0 0 0 c 0 0 0 0 0 0 9.0 9.0 9.0 9.0 9.0 971.0 9.0 9.0 0 0 0 0 0 g 0 0 0 0 0 0 971.0 9.0 9.0 9.0 9.0 9.0 9.0 9.0 0 0 0 0 0 t 0 0 0 0 0 0 9.0 971.0 9.0 9.0 9.0 9.0 9.0 9.0 0 0 0 0 0

MA0613.1_shift6 (FOXG1)
; oligos_6nt_mkv3_m5 versus MA0613.1 (FOXG1); m=15/22; ncol2=8; w=8; offset=1; strand=D; shift=6; score=0.457121; ------rTAAACAw----- ; cor=; Ncor= a 0 0 0 0 0 0 374.0 1.0 997.0 997.0 997.0 1.0 997.0 498.0 0 0 0 0 0 c 0 0 0 0 0 0 1.0 1.0 1.0 1.0 1.0 997.0 1.0 167.0 0 0 0 0 0 g 0 0 0 0 0 0 623.0 1.0 1.0 1.0 1.0 1.0 1.0 2.0 0 0 0 0 0 t 0 0 0 0 0 0 1.0 997.0 1.0 1.0 1.0 1.0 1.0 333.0 0 0 0 0 0

MA0157.2_shift6 (FOXO3)
; oligos_6nt_mkv3_m5 versus MA0157.2 (FOXO3); m=16/22; ncol2=8; w=8; offset=1; strand=D; shift=6; score=0.436706; ------GTAAACAw----- ; cor=; Ncor= a 0 0 0 0 0 0 21.0 0.0 532.0 532.0 532.0 15.0 532.0 317.0 0 0 0 0 0 c 0 0 0 0 0 0 0.0 0.0 16.0 1.0 10.0 532.0 11.0 12.0 0 0 0 0 0 g 0 0 0 0 0 0 532.0 13.0 5.0 0.0 0.0 0.0 0.0 36.0 0 0 0 0 0 t 0 0 0 0 0 0 0.0 532.0 1.0 0.0 0.0 3.0 0.0 215.0 0 0 0 0 0

MA0031.1_shift6 (FOXD1)
; oligos_6nt_mkv3_m5 versus MA0031.1 (FOXD1); m=17/22; ncol2=8; w=8; offset=1; strand=D; shift=6; score=0.420545; ------GTAAACAw----- ; cor=; Ncor= a 0 0 0 0 0 0 1.0 0.0 19.0 20.0 18.0 1.0 20.0 7.0 0 0 0 0 0 c 0 0 0 0 0 0 1.0 0.0 1.0 0.0 1.0 18.0 0.0 2.0 0 0 0 0 0 g 0 0 0 0 0 0 17.0 0.0 0.0 0.0 1.0 0.0 0.0 3.0 0 0 0 0 0 t 0 0 0 0 0 0 1.0 20.0 0.0 0.0 0.0 1.0 0.0 8.0 0 0 0 0 0

MA1487.1_shift0 (FOXE1)
; oligos_6nt_mkv3_m5 versus MA1487.1 (FOXE1); m=18/22; ncol2=15; w=10; offset=-5; strand=D; shift=0; score=0.412536; cvyTAARyAAACAay---- ; cor=; Ncor= a 54.0 288.0 37.0 191.0 664.0 664.0 664.0 0.0 664.0 664.0 664.0 0.0 664.0 521.0 148.0 0 0 0 0 c 289.0 381.0 298.0 0.0 15.0 57.0 0.0 324.0 10.0 8.0 0.0 664.0 0.0 84.0 180.0 0 0 0 0 g 165.0 283.0 38.0 0.0 30.0 58.0 228.0 0.0 0.0 0.0 0.0 0.0 3.0 123.0 100.0 0 0 0 0 t 155.0 0.0 366.0 664.0 0.0 194.0 0.0 340.0 0.0 0.0 0.0 0.0 0.0 142.0 235.0 0 0 0 0

MA0850.1_shift6 (FOXP3)
; oligos_6nt_mkv3_m5 versus MA0850.1 (FOXP3); m=19/22; ncol2=7; w=7; offset=1; strand=D; shift=6; score=0.411593; ------rTAAACA------ ; cor=; Ncor= a 0 0 0 0 0 0 74.0 20.0 211.0 211.0 211.0 0.0 211.0 0 0 0 0 0 0 c 0 0 0 0 0 0 0.0 52.0 0.0 0.0 15.0 211.0 0.0 0 0 0 0 0 0 g 0 0 0 0 0 0 137.0 0.0 0.0 9.0 49.0 32.0 18.0 0 0 0 0 0 0 t 0 0 0 0 0 0 0.0 211.0 31.0 8.0 0.0 39.0 0.0 0 0 0 0 0 0

MA0033.2_shift6 (FOXL1)
; oligos_6nt_mkv3_m5 versus MA0033.2 (FOXL1); m=20/22; ncol2=7; w=7; offset=1; strand=D; shift=6; score=0.40967; ------rTAAACA------ ; cor=; Ncor= a 0 0 0 0 0 0 2102.0 10.0 4780.0 4780.0 4780.0 0.0 4780.0 0 0 0 0 0 0 c 0 0 0 0 0 0 13.0 416.0 628.0 38.0 82.0 3723.0 54.0 0 0 0 0 0 0 g 0 0 0 0 0 0 2678.0 0.0 57.0 0.0 50.0 0.0 0.0 0 0 0 0 0 0 t 0 0 0 0 0 0 140.0 4780.0 0.0 15.0 0.0 1057.0 17.0 0 0 0 0 0 0

MA0848.1_shift6 (FOXO4)
; oligos_6nt_mkv3_m5 versus MA0848.1 (FOXO4); m=21/22; ncol2=7; w=7; offset=1; strand=D; shift=6; score=0.404251; ------GTAAACA------ ; cor=; Ncor= a 0 0 0 0 0 0 1669.0 345.0 5378.0 5378.0 5378.0 58.0 5378.0 0 0 0 0 0 0 c 0 0 0 0 0 0 13.0 69.0 1259.0 146.0 0.0 5378.0 10.0 0 0 0 0 0 0 g 0 0 0 0 0 0 5378.0 123.0 32.0 19.0 90.0 33.0 10.0 0 0 0 0 0 0 t 0 0 0 0 0 0 0.0 5378.0 20.0 20.0 10.0 958.0 40.0 0 0 0 0 0 0

MA0030.1_shift1 (FOXF2)
; oligos_6nt_mkv3_m5 versus MA0030.1 (FOXF2); m=22/22; ncol2=14; w=10; offset=-4; strand=D; shift=1; score=0.404137; -bmaasRTAAACAaw---- ; cor=; Ncor= a 0 1.0 10.0 17.0 13.0 3.0 7.0 0.0 27.0 27.0 27.0 0.0 27.0 16.0 7.0 0 0 0 0 c 0 10.0 7.0 4.0 5.0 11.0 0.0 0.0 0.0 0.0 0.0 25.0 0.0 4.0 4.0 0 0 0 0 g 0 7.0 5.0 2.0 5.0 8.0 20.0 0.0 0.0 0.0 0.0 0.0 0.0 2.0 6.0 0 0 0 0 t 0 9.0 5.0 4.0 5.0 0.0 0.0 27.0 0.0 0.0 0.0 2.0 0.0 5.0 10.0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv3_m3_shift0 ; 14 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv3_m3_shift0 (oligos_6nt_mkv3_m3)
; oligos_6nt_mkv3_m3; m=0 (reference); ncol1=21; shift=0; ncol=21; yhcaTTTGCATaAcAAwgsmm ; Alignment reference a 141 209 180 501 47 82 96 99 42 766 25 519 544 55 658 688 459 195 178 270 218 c 223 205 311 89 38 104 22 40 726 12 29 59 32 501 49 31 39 58 219 216 233 g 189 146 126 96 24 45 8 633 9 5 13 123 28 148 24 43 42 485 306 181 169 t 237 230 173 104 681 559 664 18 13 7 723 89 186 86 59 28 250 52 87 123 170

MA0142.1_rc_shift3 (Pou5f1::Sox2_rc)
; oligos_6nt_mkv3_m3 versus MA0142.1_rc (Pou5f1::Sox2_rc); m=1/13; ncol2=15; w=15; offset=3; strand=R; shift=3; score=0.705446; ---aTtTGCATrwsAAwr--- ; cor=; Ncor= a 0 0 0 837.0 53.0 92.0 269.0 196.0 104.0 1332.0 80.0 612.0 907.0 63.0 1231.0 1270.0 701.0 389.0 0 0 0 c 0 0 0 207.0 75.0 315.0 30.0 129.0 1239.0 15.0 24.0 186.0 29.0 825.0 79.0 36.0 28.0 66.0 0 0 0 g 0 0 0 119.0 33.0 68.0 16.0 1029.0 16.0 5.0 30.0 365.0 18.0 363.0 12.0 50.0 58.0 846.0 0 0 0 t 0 0 0 198.0 1200.0 887.0 1050.0 14.0 10.0 17.0 1235.0 206.0 415.0 118.0 47.0 11.0 579.0 63.0 0 0 0

MA0507.1_shift0 (POU2F2)
; oligos_6nt_mkv3_m3 versus MA0507.1 (POU2F2); m=2/13; ncol2=13; w=13; offset=0; strand=D; shift=0; score=0.585843; ykmATTTGCATrw-------- ; cor=; Ncor= a 415.0 530.0 605.0 2016.0 0.0 256.0 0.0 158.0 0.0 2257.0 0.0 1159.0 594.0 0 0 0 0 0 0 0 0 c 635.0 266.0 825.0 19.0 0.0 2.0 0.0 0.0 2271.0 30.0 2.0 39.0 361.0 0 0 0 0 0 0 0 0 g 402.0 593.0 415.0 1.0 0.0 0.0 0.0 1997.0 0.0 0.0 0.0 613.0 107.0 0 0 0 0 0 0 0 0 t 835.0 898.0 442.0 251.0 2287.0 2029.0 2287.0 132.0 16.0 0.0 2285.0 476.0 1225.0 0 0 0 0 0 0 0 0

MA0784.1_rc_shift0 (POU1F1_rc)
; oligos_6nt_mkv3_m3 versus MA0784.1_rc (POU1F1_rc); m=3/13; ncol2=14; w=14; offset=0; strand=R; shift=0; score=0.571749; cTmATTwGCATAwt------- ; cor=; Ncor= a 547.0 273.0 1287.0 2128.0 3.0 85.0 861.0 536.0 176.0 2128.0 19.0 2128.0 1000.0 397.0 0 0 0 0 0 0 0 c 2128.0 194.0 840.0 40.0 0.0 82.0 7.0 164.0 2128.0 26.0 32.0 108.0 187.0 273.0 0 0 0 0 0 0 0 g 479.0 174.0 241.0 37.0 10.0 11.0 12.0 2128.0 11.0 74.0 14.0 83.0 123.0 247.0 0 0 0 0 0 0 0 t 736.0 2128.0 222.0 76.0 2128.0 2128.0 1267.0 98.0 28.0 45.0 2128.0 276.0 1128.0 1211.0 0 0 0 0 0 0 0

MA0627.2_rc_shift1 (POU2F3_rc)
; oligos_6nt_mkv3_m3 versus MA0627.2_rc (POU2F3_rc); m=4/13; ncol2=13; w=13; offset=1; strand=R; shift=1; score=0.571676; -wwATTTGCATatw------- ; cor=; Ncor= a 0 17245.0 15909.0 43338.0 330.0 3276.0 896.0 3716.0 2827.0 53366.0 931.0 37593.0 13775.0 16525.0 0 0 0 0 0 0 0 c 0 7941.0 13237.0 4098.0 233.0 804.0 138.0 1079.0 51971.0 1251.0 354.0 3029.0 8770.0 10722.0 0 0 0 0 0 0 0 g 0 11936.0 10595.0 3478.0 164.0 567.0 80.0 50288.0 251.0 322.0 194.0 6885.0 6824.0 11383.0 0 0 0 0 0 0 0 t 0 18907.0 16288.0 5115.0 55302.0 51382.0 54915.0 946.0 980.0 1090.0 54550.0 8522.0 26660.0 17399.0 0 0 0 0 0 0 0

MA0786.1_rc_shift1 (POU3F1_rc)
; oligos_6nt_mkv3_m3 versus MA0786.1_rc (POU3F1_rc); m=5/13; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.537164; -wmATTwrCATAw-------- ; cor=; Ncor= a 0 961.0 1167.0 2471.0 63.0 284.0 1048.0 1119.0 232.0 2471.0 21.0 2471.0 1437.0 0 0 0 0 0 0 0 0 c 0 452.0 620.0 128.0 25.0 130.0 21.0 413.0 2471.0 21.0 26.0 128.0 322.0 0 0 0 0 0 0 0 0 g 0 478.0 302.0 95.0 20.0 103.0 1.0 2471.0 13.0 53.0 7.0 186.0 126.0 0 0 0 0 0 0 0 0 t 0 1510.0 382.0 259.0 2471.0 2471.0 1423.0 170.0 37.0 44.0 2471.0 505.0 1034.0 0 0 0 0 0 0 0 0

MA0788.1_rc_shift1 (POU3F3_rc)
; oligos_6nt_mkv3_m3 versus MA0788.1_rc (POU3F3_rc); m=6/13; ncol2=13; w=13; offset=1; strand=R; shift=1; score=0.530106; -waATTwGCATAww------- ; cor=; Ncor= a 0 542.0 1078.0 1078.0 14.0 79.0 572.0 343.0 86.0 1078.0 30.0 1078.0 637.0 290.0 0 0 0 0 0 0 0 c 0 115.0 237.0 12.0 15.0 77.0 1.0 118.0 1078.0 49.0 12.0 64.0 131.0 137.0 0 0 0 0 0 0 0 g 0 85.0 141.0 20.0 6.0 11.0 4.0 1078.0 10.0 33.0 11.0 57.0 41.0 75.0 0 0 0 0 0 0 0 t 0 536.0 240.0 53.0 1078.0 1078.0 506.0 28.0 22.0 25.0 1078.0 129.0 440.0 576.0 0 0 0 0 0 0 0

MA0787.1_rc_shift1 (POU3F2_rc)
; oligos_6nt_mkv3_m3 versus MA0787.1_rc (POU3F2_rc); m=7/13; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.527342; -tmATTwGCATAw-------- ; cor=; Ncor= a 0 562.0 840.0 1292.0 13.0 45.0 604.0 372.0 60.0 1292.0 0.0 1292.0 700.0 0 0 0 0 0 0 0 0 c 0 261.0 452.0 28.0 0.0 32.0 1.0 153.0 1292.0 12.0 25.0 40.0 171.0 0 0 0 0 0 0 0 0 g 0 262.0 165.0 19.0 6.0 16.0 4.0 1292.0 9.0 30.0 16.0 65.0 61.0 0 0 0 0 0 0 0 0 t 0 1292.0 137.0 63.0 1292.0 1292.0 688.0 68.0 19.0 28.0 1292.0 163.0 591.0 0 0 0 0 0 0 0 0

MA0785.1_rc_shift2 (POU2F1_rc)
; oligos_6nt_mkv3_m3 versus MA0785.1_rc (POU2F1_rc); m=8/13; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.519316; --aATTwgCATAwt------- ; cor=; Ncor= a 0 0 4262.0 10582.0 158.0 787.0 3651.0 3375.0 1326.0 10582.0 43.0 10582.0 5231.0 2075.0 0 0 0 0 0 0 0 c 0 0 2504.0 755.0 51.0 879.0 46.0 1351.0 10582.0 213.0 29.0 474.0 2142.0 1494.0 0 0 0 0 0 0 0 g 0 0 1840.0 457.0 37.0 108.0 33.0 10582.0 82.0 501.0 12.0 1347.0 1046.0 1938.0 0 0 0 0 0 0 0 t 0 0 1976.0 1422.0 10582.0 10582.0 6932.0 300.0 186.0 153.0 10582.0 756.0 5351.0 5076.0 0 0 0 0 0 0 0

MA0043.3_rc_shift2 (HLF_rc)
; oligos_6nt_mkv3_m3 versus MA0043.3_rc (HLF_rc); m=9/13; ncol2=14; w=14; offset=2; strand=R; shift=2; score=0.503309; --wkrTTRCATAAyhw----- ; cor=; Ncor= a 0 0 6732.0 5897.0 6488.0 113.0 98.0 6653.0 189.0 22426.0 209.0 23271.0 23739.0 1410.0 7927.0 6925.0 0 0 0 0 0 c 0 0 5523.0 3218.0 3300.0 189.0 48.0 199.0 21705.0 253.0 1344.0 895.0 148.0 9793.0 6297.0 5626.0 0 0 0 0 0 g 0 0 5267.0 6412.0 13237.0 67.0 122.0 17203.0 112.0 1548.0 125.0 96.0 242.0 4432.0 4009.0 5063.0 0 0 0 0 0 t 0 0 6902.0 8897.0 1399.0 24055.0 24156.0 369.0 2418.0 197.0 22746.0 162.0 295.0 8789.0 6191.0 6810.0 0 0 0 0 0

MA1115.1_rc_shift2 (POU5F1_rc)
; oligos_6nt_mkv3_m3 versus MA1115.1_rc (POU5F1_rc); m=10/13; ncol2=11; w=11; offset=2; strand=R; shift=2; score=0.502564; --haTTTGCATww-------- ; cor=; Ncor= a 0 0 3637.0 6383.0 307.0 838.0 1108.0 1723.0 634.0 12834.0 70.0 4818.0 4846.0 0 0 0 0 0 0 0 0 c 0 0 3551.0 2071.0 257.0 1026.0 118.0 548.0 11571.0 67.0 229.0 1908.0 1996.0 0 0 0 0 0 0 0 0 g 0 0 2450.0 2104.0 270.0 690.0 132.0 10310.0 192.0 130.0 122.0 2785.0 1290.0 0 0 0 0 0 0 0 0 t 0 0 3476.0 2556.0 12280.0 10560.0 11756.0 533.0 717.0 83.0 12693.0 3603.0 4982.0 0 0 0 0 0 0 0 0

MA0025.2_rc_shift2 (NFIL3_rc)
; oligos_6nt_mkv3_m3 versus MA0025.2_rc (NFIL3_rc); m=11/13; ncol2=13; w=13; offset=2; strand=R; shift=2; score=0.478461; --wtaTTrCATAAyw------ ; cor=; Ncor= a 0 0 6893.0 5543.0 13143.0 474.0 434.0 9180.0 610.0 20334.0 433.0 20606.0 20927.0 2798.0 7109.0 0 0 0 0 0 0 c 0 0 4482.0 4152.0 2701.0 360.0 171.0 454.0 20459.0 492.0 990.0 1714.0 518.0 7261.0 5615.0 0 0 0 0 0 0 g 0 0 4929.0 5630.0 4959.0 251.0 543.0 12004.0 467.0 1511.0 220.0 208.0 681.0 3896.0 3904.0 0 0 0 0 0 0 t 0 0 6692.0 7671.0 2193.0 21911.0 21848.0 1358.0 1460.0 659.0 21353.0 468.0 870.0 9041.0 6368.0 0 0 0 0 0 0

MA0792.1_rc_shift3 (POU5F1B_rc)
; oligos_6nt_mkv3_m3 versus MA0792.1_rc (POU5F1B_rc); m=12/13; ncol2=9; w=9; offset=3; strand=R; shift=3; score=0.416653; ---ATTwrCATA--------- ; cor=; Ncor= a 0 0 0 9519.0 203.0 896.0 3220.0 3828.0 1790.0 9519.0 84.0 9519.0 0 0 0 0 0 0 0 0 0 c 0 0 0 750.0 97.0 856.0 65.0 1293.0 9519.0 206.0 67.0 808.0 0 0 0 0 0 0 0 0 0 g 0 0 0 537.0 65.0 144.0 51.0 9519.0 94.0 364.0 21.0 1778.0 0 0 0 0 0 0 0 0 0 t 0 0 0 1559.0 9519.0 9519.0 6299.0 398.0 322.0 171.0 9519.0 1326.0 0 0 0 0 0 0 0 0 0

MA0789.1_rc_shift3 (POU3F4_rc)
; oligos_6nt_mkv3_m3 versus MA0789.1_rc (POU3F4_rc); m=13/13; ncol2=9; w=9; offset=3; strand=R; shift=3; score=0.412927; ---ATTwGCATA--------- ; cor=; Ncor= a 0 0 0 11117.0 168.0 885.0 4670.0 2565.0 245.0 11117.0 26.0 11117.0 0 0 0 0 0 0 0 0 0 c 0 0 0 292.0 88.0 315.0 56.0 602.0 11117.0 24.0 68.0 136.0 0 0 0 0 0 0 0 0 0 g 0 0 0 247.0 47.0 332.0 10.0 11117.0 19.0 59.0 23.0 349.0 0 0 0 0 0 0 0 0 0 t 0 0 0 705.0 11117.0 11117.0 6447.0 136.0 53.0 59.0 11117.0 941.0 0 0 0 0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: positions_7nt_m4_shift0 ; 10 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
positions_7nt_m4_shift0 (positions_7nt_m4)
; positions_7nt_m4; m=0 (reference); ncol1=22; shift=0; ncol=22; cywTTgtyATGCAAATgmarry ; Alignment reference a 130 129 352 59 95 101 191 129 765 21 23 44 727 603 785 70 138 211 384 230 226 176 c 308 364 98 82 53 159 42 374 8 4 7 670 11 38 9 69 95 285 150 199 176 241 g 197 96 93 50 62 466 77 78 21 7 741 41 16 77 22 59 470 175 181 213 231 173 t 199 245 291 643 624 108 524 253 40 802 63 79 80 116 18 636 131 163 119 192 201 244

MA0142.1_shift1 (Pou5f1::Sox2)
; positions_7nt_m4 versus MA0142.1 (Pou5f1::Sox2); m=1/9; ncol2=15; w=15; offset=1; strand=D; shift=1; score=0.661009; -ywTTswyATGCAaAt------ ; cor=; Ncor= a 0 63.0 579.0 11.0 47.0 118.0 415.0 206.0 1235.0 17.0 10.0 14.0 1050.0 887.0 1200.0 198.0 0 0 0 0 0 0 c 0 846.0 58.0 50.0 12.0 363.0 18.0 365.0 30.0 5.0 16.0 1029.0 16.0 68.0 33.0 119.0 0 0 0 0 0 0 g 0 66.0 28.0 36.0 79.0 825.0 29.0 186.0 24.0 15.0 1239.0 129.0 30.0 315.0 75.0 207.0 0 0 0 0 0 0 t 0 389.0 701.0 1270.0 1231.0 63.0 907.0 612.0 80.0 1332.0 104.0 196.0 269.0 92.0 53.0 837.0 0 0 0 0 0 0

MA0507.1_rc_shift6 (POU2F2_rc)
; positions_7nt_m4 versus MA0507.1_rc (POU2F2_rc); m=2/9; ncol2=13; w=13; offset=6; strand=R; shift=6; score=0.562095; ------wyATGCAAATkmr--- ; cor=; Ncor= a 0 0 0 0 0 0 1225.0 476.0 2285.0 0.0 16.0 132.0 2287.0 2029.0 2287.0 251.0 442.0 898.0 835.0 0 0 0 c 0 0 0 0 0 0 107.0 613.0 0.0 0.0 0.0 1997.0 0.0 0.0 0.0 1.0 415.0 593.0 402.0 0 0 0 g 0 0 0 0 0 0 361.0 39.0 2.0 30.0 2271.0 0.0 0.0 2.0 0.0 19.0 825.0 266.0 635.0 0 0 0 t 0 0 0 0 0 0 594.0 1159.0 0.0 2257.0 0.0 158.0 0.0 256.0 0.0 2016.0 605.0 530.0 415.0 0 0 0

MA0627.2_shift5 (POU2F3)
; positions_7nt_m4 versus MA0627.2 (POU2F3); m=3/9; ncol2=13; w=13; offset=5; strand=D; shift=5; score=0.536272; -----watATGCAAATww---- ; cor=; Ncor= a 0 0 0 0 0 17399.0 26660.0 8522.0 54550.0 1090.0 980.0 946.0 54915.0 51382.0 55302.0 5115.0 16288.0 18907.0 0 0 0 0 c 0 0 0 0 0 11383.0 6824.0 6885.0 194.0 322.0 251.0 50288.0 80.0 567.0 164.0 3478.0 10595.0 11936.0 0 0 0 0 g 0 0 0 0 0 10722.0 8770.0 3029.0 354.0 1251.0 51971.0 1079.0 138.0 804.0 233.0 4098.0 13237.0 7941.0 0 0 0 0 t 0 0 0 0 0 16525.0 13775.0 37593.0 931.0 53366.0 2827.0 3716.0 896.0 3276.0 330.0 43338.0 15909.0 17245.0 0 0 0 0

MA0784.1_shift5 (POU1F1)
; positions_7nt_m4 versus MA0784.1 (POU1F1); m=4/9; ncol2=14; w=14; offset=5; strand=D; shift=5; score=0.518736; -----awTATGCwAATkAg--- ; cor=; Ncor= a 0 0 0 0 0 1211.0 1128.0 276.0 2128.0 45.0 28.0 98.0 1267.0 2128.0 2128.0 76.0 222.0 2128.0 736.0 0 0 0 c 0 0 0 0 0 247.0 123.0 83.0 14.0 74.0 11.0 2128.0 12.0 11.0 10.0 37.0 241.0 174.0 479.0 0 0 0 g 0 0 0 0 0 273.0 187.0 108.0 32.0 26.0 2128.0 164.0 7.0 82.0 0.0 40.0 840.0 194.0 2128.0 0 0 0 t 0 0 0 0 0 397.0 1000.0 2128.0 19.0 2128.0 176.0 536.0 861.0 85.0 3.0 2128.0 1287.0 273.0 547.0 0 0 0

MA0786.1_shift6 (POU3F1)
; positions_7nt_m4 versus MA0786.1 (POU3F1); m=5/9; ncol2=12; w=12; offset=6; strand=D; shift=6; score=0.486014; ------wTATGywAATkw---- ; cor=; Ncor= a 0 0 0 0 0 0 1034.0 505.0 2471.0 44.0 37.0 170.0 1423.0 2471.0 2471.0 259.0 382.0 1510.0 0 0 0 0 c 0 0 0 0 0 0 126.0 186.0 7.0 53.0 13.0 2471.0 1.0 103.0 20.0 95.0 302.0 478.0 0 0 0 0 g 0 0 0 0 0 0 322.0 128.0 26.0 21.0 2471.0 413.0 21.0 130.0 25.0 128.0 620.0 452.0 0 0 0 0 t 0 0 0 0 0 0 1437.0 2471.0 21.0 2471.0 232.0 1119.0 1048.0 284.0 63.0 2471.0 1167.0 961.0 0 0 0 0

MA0785.1_shift5 (POU2F1)
; positions_7nt_m4 versus MA0785.1 (POU2F1); m=6/9; ncol2=12; w=12; offset=5; strand=D; shift=5; score=0.477714; -----awTATGcwAATt----- ; cor=; Ncor= a 0 0 0 0 0 5076.0 5351.0 756.0 10582.0 153.0 186.0 300.0 6932.0 10582.0 10582.0 1422.0 1976.0 0 0 0 0 0 c 0 0 0 0 0 1938.0 1046.0 1347.0 12.0 501.0 82.0 10582.0 33.0 108.0 37.0 457.0 1840.0 0 0 0 0 0 g 0 0 0 0 0 1494.0 2142.0 474.0 29.0 213.0 10582.0 1351.0 46.0 879.0 51.0 755.0 2504.0 0 0 0 0 0 t 0 0 0 0 0 2075.0 5231.0 10582.0 43.0 10582.0 1326.0 3375.0 3651.0 787.0 158.0 10582.0 4262.0 0 0 0 0 0

MA0788.1_shift5 (POU3F3)
; positions_7nt_m4 versus MA0788.1 (POU3F3); m=7/9; ncol2=13; w=13; offset=5; strand=D; shift=5; score=0.477583; -----wwTATGCwAATtw---- ; cor=; Ncor= a 0 0 0 0 0 576.0 440.0 129.0 1078.0 25.0 22.0 28.0 506.0 1078.0 1078.0 53.0 240.0 536.0 0 0 0 0 c 0 0 0 0 0 75.0 41.0 57.0 11.0 33.0 10.0 1078.0 4.0 11.0 6.0 20.0 141.0 85.0 0 0 0 0 g 0 0 0 0 0 137.0 131.0 64.0 12.0 49.0 1078.0 118.0 1.0 77.0 15.0 12.0 237.0 115.0 0 0 0 0 t 0 0 0 0 0 290.0 637.0 1078.0 30.0 1078.0 86.0 343.0 572.0 79.0 14.0 1078.0 1078.0 542.0 0 0 0 0

MA0787.1_shift6 (POU3F2)
; positions_7nt_m4 versus MA0787.1 (POU3F2); m=8/9; ncol2=12; w=12; offset=6; strand=D; shift=6; score=0.476318; ------wTATGCwAATka---- ; cor=; Ncor= a 0 0 0 0 0 0 591.0 163.0 1292.0 28.0 19.0 68.0 688.0 1292.0 1292.0 63.0 137.0 1292.0 0 0 0 0 c 0 0 0 0 0 0 61.0 65.0 16.0 30.0 9.0 1292.0 4.0 16.0 6.0 19.0 165.0 262.0 0 0 0 0 g 0 0 0 0 0 0 171.0 40.0 25.0 12.0 1292.0 153.0 1.0 32.0 0.0 28.0 452.0 261.0 0 0 0 0 t 0 0 0 0 0 0 700.0 1292.0 0.0 1292.0 60.0 372.0 604.0 45.0 13.0 1292.0 840.0 562.0 0 0 0 0

MA1115.1_shift6 (POU5F1)
; positions_7nt_m4 versus MA1115.1 (POU5F1); m=9/9; ncol2=11; w=11; offset=6; strand=D; shift=6; score=0.476298; ------wwATGCAAAtd----- ; cor=; Ncor= a 0 0 0 0 0 0 4982.0 3603.0 12693.0 83.0 717.0 533.0 11756.0 10560.0 12280.0 2556.0 3476.0 0 0 0 0 0 c 0 0 0 0 0 0 1290.0 2785.0 122.0 130.0 192.0 10310.0 132.0 690.0 270.0 2104.0 2450.0 0 0 0 0 0 g 0 0 0 0 0 0 1996.0 1908.0 229.0 67.0 11571.0 548.0 118.0 1026.0 257.0 2071.0 3551.0 0 0 0 0 0 t 0 0 0 0 0 0 4846.0 4818.0 70.0 12834.0 634.0 1723.0 1108.0 838.0 307.0 6383.0 3637.0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: positions_7nt_m1_shift0 ; 12 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
positions_7nt_m1_shift0 (positions_7nt_m1)
; positions_7nt_m1; m=0 (reference); ncol1=24; shift=0; ncol=24; kbcywTTgTtATGCAAATgvarky ; Alignment reference a 140 97 74 53 232 15 34 71 139 75 601 7 10 12 550 462 598 78 130 175 252 181 149 139 c 151 165 307 365 42 39 16 108 11 116 11 3 7 531 8 39 12 61 87 168 136 154 152 202 g 187 178 132 61 32 22 33 444 20 59 22 4 603 34 17 92 24 67 314 170 162 185 184 138 t 181 219 146 180 353 583 576 36 489 409 25 645 39 82 84 66 25 453 128 146 109 139 174 180

MA0142.1_shift3 (Pou5f1::Sox2)
; positions_7nt_m1 versus MA0142.1 (Pou5f1::Sox2); m=1/11; ncol2=15; w=15; offset=3; strand=D; shift=3; score=0.618448; ---ywTTswyATGCAaAt------ ; cor=; Ncor= a 0 0 0 63.0 579.0 11.0 47.0 118.0 415.0 206.0 1235.0 17.0 10.0 14.0 1050.0 887.0 1200.0 198.0 0 0 0 0 0 0 c 0 0 0 846.0 58.0 50.0 12.0 363.0 18.0 365.0 30.0 5.0 16.0 1029.0 16.0 68.0 33.0 119.0 0 0 0 0 0 0 g 0 0 0 66.0 28.0 36.0 79.0 825.0 29.0 186.0 24.0 15.0 1239.0 129.0 30.0 315.0 75.0 207.0 0 0 0 0 0 0 t 0 0 0 389.0 701.0 1270.0 1231.0 63.0 907.0 612.0 80.0 1332.0 104.0 196.0 269.0 92.0 53.0 837.0 0 0 0 0 0 0

MA0507.1_rc_shift8 (POU2F2_rc)
; positions_7nt_m1 versus MA0507.1_rc (POU2F2_rc); m=2/11; ncol2=13; w=13; offset=8; strand=R; shift=8; score=0.510228; --------wyATGCAAATkmr--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1225.0 476.0 2285.0 0.0 16.0 132.0 2287.0 2029.0 2287.0 251.0 442.0 898.0 835.0 0 0 0 c 0 0 0 0 0 0 0 0 107.0 613.0 0.0 0.0 0.0 1997.0 0.0 0.0 0.0 1.0 415.0 593.0 402.0 0 0 0 g 0 0 0 0 0 0 0 0 361.0 39.0 2.0 30.0 2271.0 0.0 0.0 2.0 0.0 19.0 825.0 266.0 635.0 0 0 0 t 0 0 0 0 0 0 0 0 594.0 1159.0 0.0 2257.0 0.0 158.0 0.0 256.0 0.0 2016.0 605.0 530.0 415.0 0 0 0

MA0627.2_shift7 (POU2F3)
; positions_7nt_m1 versus MA0627.2 (POU2F3); m=3/11; ncol2=13; w=13; offset=7; strand=D; shift=7; score=0.492181; -------watATGCAAATww---- ; cor=; Ncor= a 0 0 0 0 0 0 0 17399.0 26660.0 8522.0 54550.0 1090.0 980.0 946.0 54915.0 51382.0 55302.0 5115.0 16288.0 18907.0 0 0 0 0 c 0 0 0 0 0 0 0 11383.0 6824.0 6885.0 194.0 322.0 251.0 50288.0 80.0 567.0 164.0 3478.0 10595.0 11936.0 0 0 0 0 g 0 0 0 0 0 0 0 10722.0 8770.0 3029.0 354.0 1251.0 51971.0 1079.0 138.0 804.0 233.0 4098.0 13237.0 7941.0 0 0 0 0 t 0 0 0 0 0 0 0 16525.0 13775.0 37593.0 931.0 53366.0 2827.0 3716.0 896.0 3276.0 330.0 43338.0 15909.0 17245.0 0 0 0 0

MA0784.1_shift7 (POU1F1)
; positions_7nt_m1 versus MA0784.1 (POU1F1); m=4/11; ncol2=14; w=14; offset=7; strand=D; shift=7; score=0.492016; -------awTATGCwAATkAg--- ; cor=; Ncor= a 0 0 0 0 0 0 0 1211.0 1128.0 276.0 2128.0 45.0 28.0 98.0 1267.0 2128.0 2128.0 76.0 222.0 2128.0 736.0 0 0 0 c 0 0 0 0 0 0 0 247.0 123.0 83.0 14.0 74.0 11.0 2128.0 12.0 11.0 10.0 37.0 241.0 174.0 479.0 0 0 0 g 0 0 0 0 0 0 0 273.0 187.0 108.0 32.0 26.0 2128.0 164.0 7.0 82.0 0.0 40.0 840.0 194.0 2128.0 0 0 0 t 0 0 0 0 0 0 0 397.0 1000.0 2128.0 19.0 2128.0 176.0 536.0 861.0 85.0 3.0 2128.0 1287.0 273.0 547.0 0 0 0

MA0786.1_shift8 (POU3F1)
; positions_7nt_m1 versus MA0786.1 (POU3F1); m=5/11; ncol2=12; w=12; offset=8; strand=D; shift=8; score=0.466141; --------wTATGywAATkw---- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1034.0 505.0 2471.0 44.0 37.0 170.0 1423.0 2471.0 2471.0 259.0 382.0 1510.0 0 0 0 0 c 0 0 0 0 0 0 0 0 126.0 186.0 7.0 53.0 13.0 2471.0 1.0 103.0 20.0 95.0 302.0 478.0 0 0 0 0 g 0 0 0 0 0 0 0 0 322.0 128.0 26.0 21.0 2471.0 413.0 21.0 130.0 25.0 128.0 620.0 452.0 0 0 0 0 t 0 0 0 0 0 0 0 0 1437.0 2471.0 21.0 2471.0 232.0 1119.0 1048.0 284.0 63.0 2471.0 1167.0 961.0 0 0 0 0

MA0787.1_shift8 (POU3F2)
; positions_7nt_m1 versus MA0787.1 (POU3F2); m=6/11; ncol2=12; w=12; offset=8; strand=D; shift=8; score=0.457472; --------wTATGCwAATka---- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 591.0 163.0 1292.0 28.0 19.0 68.0 688.0 1292.0 1292.0 63.0 137.0 1292.0 0 0 0 0 c 0 0 0 0 0 0 0 0 61.0 65.0 16.0 30.0 9.0 1292.0 4.0 16.0 6.0 19.0 165.0 262.0 0 0 0 0 g 0 0 0 0 0 0 0 0 171.0 40.0 25.0 12.0 1292.0 153.0 1.0 32.0 0.0 28.0 452.0 261.0 0 0 0 0 t 0 0 0 0 0 0 0 0 700.0 1292.0 0.0 1292.0 60.0 372.0 604.0 45.0 13.0 1292.0 840.0 562.0 0 0 0 0

MA0788.1_shift7 (POU3F3)
; positions_7nt_m1 versus MA0788.1 (POU3F3); m=7/11; ncol2=13; w=13; offset=7; strand=D; shift=7; score=0.456491; -------wwTATGCwAATtw---- ; cor=; Ncor= a 0 0 0 0 0 0 0 576.0 440.0 129.0 1078.0 25.0 22.0 28.0 506.0 1078.0 1078.0 53.0 240.0 536.0 0 0 0 0 c 0 0 0 0 0 0 0 75.0 41.0 57.0 11.0 33.0 10.0 1078.0 4.0 11.0 6.0 20.0 141.0 85.0 0 0 0 0 g 0 0 0 0 0 0 0 137.0 131.0 64.0 12.0 49.0 1078.0 118.0 1.0 77.0 15.0 12.0 237.0 115.0 0 0 0 0 t 0 0 0 0 0 0 0 290.0 637.0 1078.0 30.0 1078.0 86.0 343.0 572.0 79.0 14.0 1078.0 1078.0 542.0 0 0 0 0

MA0785.1_shift7 (POU2F1)
; positions_7nt_m1 versus MA0785.1 (POU2F1); m=8/11; ncol2=12; w=12; offset=7; strand=D; shift=7; score=0.44888; -------awTATGcwAATt----- ; cor=; Ncor= a 0 0 0 0 0 0 0 5076.0 5351.0 756.0 10582.0 153.0 186.0 300.0 6932.0 10582.0 10582.0 1422.0 1976.0 0 0 0 0 0 c 0 0 0 0 0 0 0 1938.0 1046.0 1347.0 12.0 501.0 82.0 10582.0 33.0 108.0 37.0 457.0 1840.0 0 0 0 0 0 g 0 0 0 0 0 0 0 1494.0 2142.0 474.0 29.0 213.0 10582.0 1351.0 46.0 879.0 51.0 755.0 2504.0 0 0 0 0 0 t 0 0 0 0 0 0 0 2075.0 5231.0 10582.0 43.0 10582.0 1326.0 3375.0 3651.0 787.0 158.0 10582.0 4262.0 0 0 0 0 0

MA1115.1_shift8 (POU5F1)
; positions_7nt_m1 versus MA1115.1 (POU5F1); m=9/11; ncol2=11; w=11; offset=8; strand=D; shift=8; score=0.436002; --------wwATGCAAAtd----- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 4982.0 3603.0 12693.0 83.0 717.0 533.0 11756.0 10560.0 12280.0 2556.0 3476.0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 1290.0 2785.0 122.0 130.0 192.0 10310.0 132.0 690.0 270.0 2104.0 2450.0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 1996.0 1908.0 229.0 67.0 11571.0 548.0 118.0 1026.0 257.0 2071.0 3551.0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 4846.0 4818.0 70.0 12834.0 634.0 1723.0 1108.0 838.0 307.0 6383.0 3637.0 0 0 0 0 0

MA0043.3_shift5 (HLF)
; positions_7nt_m1 versus MA0043.3 (HLF); m=10/11; ncol2=14; w=14; offset=5; strand=D; shift=5; score=0.428546; -----wdrTTATGYAAymw----- ; cor=; Ncor= a 0 0 0 0 0 6810.0 6191.0 8789.0 295.0 162.0 22746.0 197.0 2418.0 369.0 24156.0 24055.0 1399.0 8897.0 6902.0 0 0 0 0 0 c 0 0 0 0 0 5063.0 4009.0 4432.0 242.0 96.0 125.0 1548.0 112.0 17203.0 122.0 67.0 13237.0 6412.0 5267.0 0 0 0 0 0 g 0 0 0 0 0 5626.0 6297.0 9793.0 148.0 895.0 1344.0 253.0 21705.0 199.0 48.0 189.0 3300.0 3218.0 5523.0 0 0 0 0 0 t 0 0 0 0 0 6925.0 7927.0 1410.0 23739.0 23271.0 209.0 22426.0 189.0 6653.0 98.0 113.0 6488.0 5897.0 6732.0 0 0 0 0 0

MA0025.2_shift6 (NFIL3)
; positions_7nt_m1 versus MA0025.2 (NFIL3); m=11/11; ncol2=13; w=13; offset=6; strand=D; shift=6; score=0.40591; ------wrTTATGyAAtaw----- ; cor=; Ncor= a 0 0 0 0 0 0 6368.0 9041.0 870.0 468.0 21353.0 659.0 1460.0 1358.0 21848.0 21911.0 2193.0 7671.0 6692.0 0 0 0 0 0 c 0 0 0 0 0 0 3904.0 3896.0 681.0 208.0 220.0 1511.0 467.0 12004.0 543.0 251.0 4959.0 5630.0 4929.0 0 0 0 0 0 g 0 0 0 0 0 0 5615.0 7261.0 518.0 1714.0 990.0 492.0 20459.0 454.0 171.0 360.0 2701.0 4152.0 4482.0 0 0 0 0 0 t 0 0 0 0 0 0 7109.0 2798.0 20927.0 20606.0 433.0 20334.0 610.0 9180.0 434.0 474.0 13143.0 5543.0 6893.0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: positions_6nt_m2_shift0 ; 9 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
positions_6nt_m2_shift0 (positions_6nt_m2)
; positions_6nt_m2; m=0 (reference); ncol1=24; shift=0; ncol=24; tataTGCATwTGCATAwsaawrkr ; Alignment reference a 73 107 44 218 15 26 23 309 18 134 24 25 33 315 23 232 155 70 159 195 86 95 85 112 c 81 70 61 40 29 35 271 8 24 29 13 19 273 3 16 20 45 124 68 48 68 52 73 79 g 79 84 22 37 23 233 14 13 20 32 3 277 11 12 20 56 38 95 42 54 50 131 94 88 t 108 80 214 46 274 47 33 11 279 146 301 20 24 11 282 33 103 52 72 44 137 63 89 62

MA0142.1_rc_shift7 (Pou5f1::Sox2_rc)
; positions_6nt_m2 versus MA0142.1_rc (Pou5f1::Sox2_rc); m=1/8; ncol2=15; w=15; offset=7; strand=R; shift=7; score=0.553918; -------aTtTGCATrwsAAwr-- ; cor=; Ncor= a 0 0 0 0 0 0 0 837.0 53.0 92.0 269.0 196.0 104.0 1332.0 80.0 612.0 907.0 63.0 1231.0 1270.0 701.0 389.0 0 0 c 0 0 0 0 0 0 0 207.0 75.0 315.0 30.0 129.0 1239.0 15.0 24.0 186.0 29.0 825.0 79.0 36.0 28.0 66.0 0 0 g 0 0 0 0 0 0 0 119.0 33.0 68.0 16.0 1029.0 16.0 5.0 30.0 365.0 18.0 363.0 12.0 50.0 58.0 846.0 0 0 t 0 0 0 0 0 0 0 198.0 1200.0 887.0 1050.0 14.0 10.0 17.0 1235.0 206.0 415.0 118.0 47.0 11.0 579.0 63.0 0 0

MA0507.1_shift4 (POU2F2)
; positions_6nt_m2 versus MA0507.1 (POU2F2); m=2/8; ncol2=13; w=13; offset=4; strand=D; shift=4; score=0.470023; ----ykmATTTGCATrw------- ; cor=; Ncor= a 0 0 0 0 415.0 530.0 605.0 2016.0 0.0 256.0 0.0 158.0 0.0 2257.0 0.0 1159.0 594.0 0 0 0 0 0 0 0 c 0 0 0 0 635.0 266.0 825.0 19.0 0.0 2.0 0.0 0.0 2271.0 30.0 2.0 39.0 361.0 0 0 0 0 0 0 0 g 0 0 0 0 402.0 593.0 415.0 1.0 0.0 0.0 0.0 1997.0 0.0 0.0 0.0 613.0 107.0 0 0 0 0 0 0 0 t 0 0 0 0 835.0 898.0 442.0 251.0 2287.0 2029.0 2287.0 132.0 16.0 0.0 2285.0 476.0 1225.0 0 0 0 0 0 0 0

MA0627.2_rc_shift5 (POU2F3_rc)
; positions_6nt_m2 versus MA0627.2_rc (POU2F3_rc); m=3/8; ncol2=13; w=13; offset=5; strand=R; shift=5; score=0.466654; -----wwATTTGCATatw------ ; cor=; Ncor= a 0 0 0 0 0 17245.0 15909.0 43338.0 330.0 3276.0 896.0 3716.0 2827.0 53366.0 931.0 37593.0 13775.0 16525.0 0 0 0 0 0 0 c 0 0 0 0 0 7941.0 13237.0 4098.0 233.0 804.0 138.0 1079.0 51971.0 1251.0 354.0 3029.0 8770.0 10722.0 0 0 0 0 0 0 g 0 0 0 0 0 11936.0 10595.0 3478.0 164.0 567.0 80.0 50288.0 251.0 322.0 194.0 6885.0 6824.0 11383.0 0 0 0 0 0 0 t 0 0 0 0 0 18907.0 16288.0 5115.0 55302.0 51382.0 54915.0 946.0 980.0 1090.0 54550.0 8522.0 26660.0 17399.0 0 0 0 0 0 0

MA0785.1_rc_shift6 (POU2F1_rc)
; positions_6nt_m2 versus MA0785.1_rc (POU2F1_rc); m=4/8; ncol2=12; w=12; offset=6; strand=R; shift=6; score=0.431729; ------aATTwgCATAwt------ ; cor=; Ncor= a 0 0 0 0 0 0 4262.0 10582.0 158.0 787.0 3651.0 3375.0 1326.0 10582.0 43.0 10582.0 5231.0 2075.0 0 0 0 0 0 0 c 0 0 0 0 0 0 2504.0 755.0 51.0 879.0 46.0 1351.0 10582.0 213.0 29.0 474.0 2142.0 1494.0 0 0 0 0 0 0 g 0 0 0 0 0 0 1840.0 457.0 37.0 108.0 33.0 10582.0 82.0 501.0 12.0 1347.0 1046.0 1938.0 0 0 0 0 0 0 t 0 0 0 0 0 0 1976.0 1422.0 10582.0 10582.0 6932.0 300.0 186.0 153.0 10582.0 756.0 5351.0 5076.0 0 0 0 0 0 0

MA0784.1_rc_shift4 (POU1F1_rc)
; positions_6nt_m2 versus MA0784.1_rc (POU1F1_rc); m=5/8; ncol2=14; w=14; offset=4; strand=R; shift=4; score=0.431338; ----cTmATTwGCATAwt------ ; cor=; Ncor= a 0 0 0 0 547.0 273.0 1287.0 2128.0 3.0 85.0 861.0 536.0 176.0 2128.0 19.0 2128.0 1000.0 397.0 0 0 0 0 0 0 c 0 0 0 0 2128.0 194.0 840.0 40.0 0.0 82.0 7.0 164.0 2128.0 26.0 32.0 108.0 187.0 273.0 0 0 0 0 0 0 g 0 0 0 0 479.0 174.0 241.0 37.0 10.0 11.0 12.0 2128.0 11.0 74.0 14.0 83.0 123.0 247.0 0 0 0 0 0 0 t 0 0 0 0 736.0 2128.0 222.0 76.0 2128.0 2128.0 1267.0 98.0 28.0 45.0 2128.0 276.0 1128.0 1211.0 0 0 0 0 0 0

MA0786.1_rc_shift5 (POU3F1_rc)
; positions_6nt_m2 versus MA0786.1_rc (POU3F1_rc); m=6/8; ncol2=12; w=12; offset=5; strand=R; shift=5; score=0.413135; -----wmATTwrCATAw------- ; cor=; Ncor= a 0 0 0 0 0 961.0 1167.0 2471.0 63.0 284.0 1048.0 1119.0 232.0 2471.0 21.0 2471.0 1437.0 0 0 0 0 0 0 0 c 0 0 0 0 0 452.0 620.0 128.0 25.0 130.0 21.0 413.0 2471.0 21.0 26.0 128.0 322.0 0 0 0 0 0 0 0 g 0 0 0 0 0 478.0 302.0 95.0 20.0 103.0 1.0 2471.0 13.0 53.0 7.0 186.0 126.0 0 0 0 0 0 0 0 t 0 0 0 0 0 1510.0 382.0 259.0 2471.0 2471.0 1423.0 170.0 37.0 44.0 2471.0 505.0 1034.0 0 0 0 0 0 0 0

MA0788.1_rc_shift5 (POU3F3_rc)
; positions_6nt_m2 versus MA0788.1_rc (POU3F3_rc); m=7/8; ncol2=13; w=13; offset=5; strand=R; shift=5; score=0.406651; -----waATTwGCATAww------ ; cor=; Ncor= a 0 0 0 0 0 542.0 1078.0 1078.0 14.0 79.0 572.0 343.0 86.0 1078.0 30.0 1078.0 637.0 290.0 0 0 0 0 0 0 c 0 0 0 0 0 115.0 237.0 12.0 15.0 77.0 1.0 118.0 1078.0 49.0 12.0 64.0 131.0 137.0 0 0 0 0 0 0 g 0 0 0 0 0 85.0 141.0 20.0 6.0 11.0 4.0 1078.0 10.0 33.0 11.0 57.0 41.0 75.0 0 0 0 0 0 0 t 0 0 0 0 0 536.0 240.0 53.0 1078.0 1078.0 506.0 28.0 22.0 25.0 1078.0 129.0 440.0 576.0 0 0 0 0 0 0

MA0787.1_rc_shift5 (POU3F2_rc)
; positions_6nt_m2 versus MA0787.1_rc (POU3F2_rc); m=8/8; ncol2=12; w=12; offset=5; strand=R; shift=5; score=0.406512; -----tmATTwGCATAw------- ; cor=; Ncor= a 0 0 0 0 0 562.0 840.0 1292.0 13.0 45.0 604.0 372.0 60.0 1292.0 0.0 1292.0 700.0 0 0 0 0 0 0 0 c 0 0 0 0 0 261.0 452.0 28.0 0.0 32.0 1.0 153.0 1292.0 12.0 25.0 40.0 171.0 0 0 0 0 0 0 0 g 0 0 0 0 0 262.0 165.0 19.0 6.0 16.0 4.0 1292.0 9.0 30.0 16.0 65.0 61.0 0 0 0 0 0 0 0 t 0 0 0 0 0 1292.0 137.0 63.0 1292.0 1292.0 688.0 68.0 19.0 28.0 1292.0 163.0 591.0 0 0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: positions_7nt_m3_shift0 ; 2 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
positions_7nt_m3_shift0 (positions_7nt_m3)
; positions_7nt_m3; m=0 (reference); ncol1=24; shift=0; ncol=24; kbywTTgTTaTGCAtAAcAAwrvm ; Alignment reference a 35 26 26 51 11 9 21 32 11 111 5 13 4 155 34 138 114 17 131 128 74 42 44 54 c 35 46 72 30 9 13 27 10 13 14 3 3 147 4 8 5 10 101 14 18 12 26 52 43 g 43 51 26 13 18 14 102 10 5 8 4 147 3 3 14 13 10 27 13 9 30 73 46 35 t 54 44 43 73 129 131 17 115 138 34 155 4 13 5 111 11 33 22 9 12 51 26 25 35

MA0142.1_shift2 (Pou5f1::Sox2)
; positions_7nt_m3 versus MA0142.1 (Pou5f1::Sox2); m=1/1; ncol2=15; w=15; offset=2; strand=D; shift=2; score=0.532673; --ywTTswyATGCAaAt------- ; cor=; Ncor= a 0 0 63.0 579.0 11.0 47.0 118.0 415.0 206.0 1235.0 17.0 10.0 14.0 1050.0 887.0 1200.0 198.0 0 0 0 0 0 0 0 c 0 0 846.0 58.0 50.0 12.0 363.0 18.0 365.0 30.0 5.0 16.0 1029.0 16.0 68.0 33.0 119.0 0 0 0 0 0 0 0 g 0 0 66.0 28.0 36.0 79.0 825.0 29.0 186.0 24.0 15.0 1239.0 129.0 30.0 315.0 75.0 207.0 0 0 0 0 0 0 0 t 0 0 389.0 701.0 1270.0 1231.0 63.0 907.0 612.0 80.0 1332.0 104.0 196.0 269.0 92.0 53.0 837.0 0 0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv3_m1_shift0 ; 10 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv3_m1_shift0 (oligos_6nt_mkv3_m1)
; oligos_6nt_mkv3_m1; m=0 (reference); ncol1=22; shift=0; ncol=22; yryaTwTGCATATGCAwAtryr ; Alignment reference a 86 142 55 241 36 111 17 47 27 397 25 375 20 20 76 370 226 296 59 148 97 131 c 118 78 162 80 88 35 40 16 362 5 21 13 12 25 295 7 62 14 54 69 117 99 g 99 117 69 54 14 62 7 295 25 12 13 21 5 362 16 40 35 88 80 162 78 118 t 131 97 148 59 296 226 370 76 20 20 375 25 397 27 47 17 111 36 241 55 142 86

MA0507.1_shift0 (POU2F2)
; oligos_6nt_mkv3_m1 versus MA0507.1 (POU2F2); m=1/9; ncol2=13; w=13; offset=0; strand=D; shift=0; score=0.52948; ykmATTTGCATrw--------- ; cor=; Ncor= a 415.0 530.0 605.0 2016.0 0.0 256.0 0.0 158.0 0.0 2257.0 0.0 1159.0 594.0 0 0 0 0 0 0 0 0 0 c 635.0 266.0 825.0 19.0 0.0 2.0 0.0 0.0 2271.0 30.0 2.0 39.0 361.0 0 0 0 0 0 0 0 0 0 g 402.0 593.0 415.0 1.0 0.0 0.0 0.0 1997.0 0.0 0.0 0.0 613.0 107.0 0 0 0 0 0 0 0 0 0 t 835.0 898.0 442.0 251.0 2287.0 2029.0 2287.0 132.0 16.0 0.0 2285.0 476.0 1225.0 0 0 0 0 0 0 0 0 0

MA0627.2_shift8 (POU2F3)
; oligos_6nt_mkv3_m1 versus MA0627.2 (POU2F3); m=2/9; ncol2=13; w=13; offset=8; strand=D; shift=8; score=0.503198; --------watATGCAAATww- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 17399.0 26660.0 8522.0 54550.0 1090.0 980.0 946.0 54915.0 51382.0 55302.0 5115.0 16288.0 18907.0 0 c 0 0 0 0 0 0 0 0 11383.0 6824.0 6885.0 194.0 322.0 251.0 50288.0 80.0 567.0 164.0 3478.0 10595.0 11936.0 0 g 0 0 0 0 0 0 0 0 10722.0 8770.0 3029.0 354.0 1251.0 51971.0 1079.0 138.0 804.0 233.0 4098.0 13237.0 7941.0 0 t 0 0 0 0 0 0 0 0 16525.0 13775.0 37593.0 931.0 53366.0 2827.0 3716.0 896.0 3276.0 330.0 43338.0 15909.0 17245.0 0

MA0142.1_rc_shift3 (Pou5f1::Sox2_rc)
; oligos_6nt_mkv3_m1 versus MA0142.1_rc (Pou5f1::Sox2_rc); m=3/9; ncol2=15; w=15; offset=3; strand=R; shift=3; score=0.487543; ---aTtTGCATrwsAAwr---- ; cor=; Ncor= a 0 0 0 837.0 53.0 92.0 269.0 196.0 104.0 1332.0 80.0 612.0 907.0 63.0 1231.0 1270.0 701.0 389.0 0 0 0 0 c 0 0 0 207.0 75.0 315.0 30.0 129.0 1239.0 15.0 24.0 186.0 29.0 825.0 79.0 36.0 28.0 66.0 0 0 0 0 g 0 0 0 119.0 33.0 68.0 16.0 1029.0 16.0 5.0 30.0 365.0 18.0 363.0 12.0 50.0 58.0 846.0 0 0 0 0 t 0 0 0 198.0 1200.0 887.0 1050.0 14.0 10.0 17.0 1235.0 206.0 415.0 118.0 47.0 11.0 579.0 63.0 0 0 0 0

MA0784.1_rc_shift0 (POU1F1_rc)
; oligos_6nt_mkv3_m1 versus MA0784.1_rc (POU1F1_rc); m=4/9; ncol2=14; w=14; offset=0; strand=R; shift=0; score=0.472069; cTmATTwGCATAwt-------- ; cor=; Ncor= a 547.0 273.0 1287.0 2128.0 3.0 85.0 861.0 536.0 176.0 2128.0 19.0 2128.0 1000.0 397.0 0 0 0 0 0 0 0 0 c 2128.0 194.0 840.0 40.0 0.0 82.0 7.0 164.0 2128.0 26.0 32.0 108.0 187.0 273.0 0 0 0 0 0 0 0 0 g 479.0 174.0 241.0 37.0 10.0 11.0 12.0 2128.0 11.0 74.0 14.0 83.0 123.0 247.0 0 0 0 0 0 0 0 0 t 736.0 2128.0 222.0 76.0 2128.0 2128.0 1267.0 98.0 28.0 45.0 2128.0 276.0 1128.0 1211.0 0 0 0 0 0 0 0 0

MA0786.1_shift9 (POU3F1)
; oligos_6nt_mkv3_m1 versus MA0786.1 (POU3F1); m=5/9; ncol2=12; w=12; offset=9; strand=D; shift=9; score=0.45305; ---------wTATGywAATkw- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 1034.0 505.0 2471.0 44.0 37.0 170.0 1423.0 2471.0 2471.0 259.0 382.0 1510.0 0 c 0 0 0 0 0 0 0 0 0 126.0 186.0 7.0 53.0 13.0 2471.0 1.0 103.0 20.0 95.0 302.0 478.0 0 g 0 0 0 0 0 0 0 0 0 322.0 128.0 26.0 21.0 2471.0 413.0 21.0 130.0 25.0 128.0 620.0 452.0 0 t 0 0 0 0 0 0 0 0 0 1437.0 2471.0 21.0 2471.0 232.0 1119.0 1048.0 284.0 63.0 2471.0 1167.0 961.0 0

MA0787.1_shift9 (POU3F2)
; oligos_6nt_mkv3_m1 versus MA0787.1 (POU3F2); m=6/9; ncol2=12; w=12; offset=9; strand=D; shift=9; score=0.446048; ---------wTATGCwAATka- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 591.0 163.0 1292.0 28.0 19.0 68.0 688.0 1292.0 1292.0 63.0 137.0 1292.0 0 c 0 0 0 0 0 0 0 0 0 61.0 65.0 16.0 30.0 9.0 1292.0 4.0 16.0 6.0 19.0 165.0 262.0 0 g 0 0 0 0 0 0 0 0 0 171.0 40.0 25.0 12.0 1292.0 153.0 1.0 32.0 0.0 28.0 452.0 261.0 0 t 0 0 0 0 0 0 0 0 0 700.0 1292.0 0.0 1292.0 60.0 372.0 604.0 45.0 13.0 1292.0 840.0 562.0 0

MA0785.1_shift8 (POU2F1)
; oligos_6nt_mkv3_m1 versus MA0785.1 (POU2F1); m=7/9; ncol2=12; w=12; offset=8; strand=D; shift=8; score=0.43914; --------awTATGcwAATt-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 5076.0 5351.0 756.0 10582.0 153.0 186.0 300.0 6932.0 10582.0 10582.0 1422.0 1976.0 0 0 c 0 0 0 0 0 0 0 0 1938.0 1046.0 1347.0 12.0 501.0 82.0 10582.0 33.0 108.0 37.0 457.0 1840.0 0 0 g 0 0 0 0 0 0 0 0 1494.0 2142.0 474.0 29.0 213.0 10582.0 1351.0 46.0 879.0 51.0 755.0 2504.0 0 0 t 0 0 0 0 0 0 0 0 2075.0 5231.0 10582.0 43.0 10582.0 1326.0 3375.0 3651.0 787.0 158.0 10582.0 4262.0 0 0

MA1115.1_shift9 (POU5F1)
; oligos_6nt_mkv3_m1 versus MA1115.1 (POU5F1); m=8/9; ncol2=11; w=11; offset=9; strand=D; shift=9; score=0.432052; ---------wwATGCAAAtd-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 4982.0 3603.0 12693.0 83.0 717.0 533.0 11756.0 10560.0 12280.0 2556.0 3476.0 0 0 c 0 0 0 0 0 0 0 0 0 1290.0 2785.0 122.0 130.0 192.0 10310.0 132.0 690.0 270.0 2104.0 2450.0 0 0 g 0 0 0 0 0 0 0 0 0 1996.0 1908.0 229.0 67.0 11571.0 548.0 118.0 1026.0 257.0 2071.0 3551.0 0 0 t 0 0 0 0 0 0 0 0 0 4846.0 4818.0 70.0 12834.0 634.0 1723.0 1108.0 838.0 307.0 6383.0 3637.0 0 0

MA0788.1_shift8 (POU3F3)
; oligos_6nt_mkv3_m1 versus MA0788.1 (POU3F3); m=9/9; ncol2=13; w=13; offset=8; strand=D; shift=8; score=0.419029; --------wwTATGCwAATtw- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 576.0 440.0 129.0 1078.0 25.0 22.0 28.0 506.0 1078.0 1078.0 53.0 240.0 536.0 0 c 0 0 0 0 0 0 0 0 75.0 41.0 57.0 11.0 33.0 10.0 1078.0 4.0 11.0 6.0 20.0 141.0 85.0 0 g 0 0 0 0 0 0 0 0 137.0 131.0 64.0 12.0 49.0 1078.0 118.0 1.0 77.0 15.0 12.0 237.0 115.0 0 t 0 0 0 0 0 0 0 0 290.0 637.0 1078.0 30.0 1078.0 86.0 343.0 572.0 79.0 14.0 1078.0 1078.0 542.0 0

One-to-n matrix alignment; reference matrix: positions_7nt_m2_shift0 ; 9 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
positions_7nt_m2_shift0 (positions_7nt_m2)
; positions_7nt_m2; m=0 (reference); ncol1=24; shift=0; ncol=24; ydyaTtTgCATATGcAaAtryayr ; Alignment reference a 40 70 21 155 10 55 10 27 16 218 11 204 15 18 47 212 134 186 26 63 55 103 34 78 c 70 38 126 39 38 20 21 5 200 4 18 6 10 12 160 3 33 6 20 31 91 44 77 48 g 47 72 29 19 9 31 4 163 11 7 7 18 2 202 5 20 16 38 43 129 31 58 58 63 t 85 62 66 29 185 136 207 47 15 13 206 14 215 10 30 7 59 12 153 19 65 37 73 53

MA0507.1_shift0 (POU2F2)
; positions_7nt_m2 versus MA0507.1 (POU2F2); m=1/8; ncol2=13; w=13; offset=0; strand=D; shift=0; score=0.496439; ykmATTTGCATrw----------- ; cor=; Ncor= a 415.0 530.0 605.0 2016.0 0.0 256.0 0.0 158.0 0.0 2257.0 0.0 1159.0 594.0 0 0 0 0 0 0 0 0 0 0 0 c 635.0 266.0 825.0 19.0 0.0 2.0 0.0 0.0 2271.0 30.0 2.0 39.0 361.0 0 0 0 0 0 0 0 0 0 0 0 g 402.0 593.0 415.0 1.0 0.0 0.0 0.0 1997.0 0.0 0.0 0.0 613.0 107.0 0 0 0 0 0 0 0 0 0 0 0 t 835.0 898.0 442.0 251.0 2287.0 2029.0 2287.0 132.0 16.0 0.0 2285.0 476.0 1225.0 0 0 0 0 0 0 0 0 0 0 0

MA0627.2_rc_shift1 (POU2F3_rc)
; positions_7nt_m2 versus MA0627.2_rc (POU2F3_rc); m=2/8; ncol2=13; w=13; offset=1; strand=R; shift=1; score=0.467354; -wwATTTGCATatw---------- ; cor=; Ncor= a 0 17245.0 15909.0 43338.0 330.0 3276.0 896.0 3716.0 2827.0 53366.0 931.0 37593.0 13775.0 16525.0 0 0 0 0 0 0 0 0 0 0 c 0 7941.0 13237.0 4098.0 233.0 804.0 138.0 1079.0 51971.0 1251.0 354.0 3029.0 8770.0 10722.0 0 0 0 0 0 0 0 0 0 0 g 0 11936.0 10595.0 3478.0 164.0 567.0 80.0 50288.0 251.0 322.0 194.0 6885.0 6824.0 11383.0 0 0 0 0 0 0 0 0 0 0 t 0 18907.0 16288.0 5115.0 55302.0 51382.0 54915.0 946.0 980.0 1090.0 54550.0 8522.0 26660.0 17399.0 0 0 0 0 0 0 0 0 0 0

MA0142.1_rc_shift3 (Pou5f1::Sox2_rc)
; positions_7nt_m2 versus MA0142.1_rc (Pou5f1::Sox2_rc); m=3/8; ncol2=15; w=15; offset=3; strand=R; shift=3; score=0.453157; ---aTtTGCATrwsAAwr------ ; cor=; Ncor= a 0 0 0 837.0 53.0 92.0 269.0 196.0 104.0 1332.0 80.0 612.0 907.0 63.0 1231.0 1270.0 701.0 389.0 0 0 0 0 0 0 c 0 0 0 207.0 75.0 315.0 30.0 129.0 1239.0 15.0 24.0 186.0 29.0 825.0 79.0 36.0 28.0 66.0 0 0 0 0 0 0 g 0 0 0 119.0 33.0 68.0 16.0 1029.0 16.0 5.0 30.0 365.0 18.0 363.0 12.0 50.0 58.0 846.0 0 0 0 0 0 0 t 0 0 0 198.0 1200.0 887.0 1050.0 14.0 10.0 17.0 1235.0 206.0 415.0 118.0 47.0 11.0 579.0 63.0 0 0 0 0 0 0

MA0784.1_rc_shift0 (POU1F1_rc)
; positions_7nt_m2 versus MA0784.1_rc (POU1F1_rc); m=4/8; ncol2=14; w=14; offset=0; strand=R; shift=0; score=0.445991; cTmATTwGCATAwt---------- ; cor=; Ncor= a 547.0 273.0 1287.0 2128.0 3.0 85.0 861.0 536.0 176.0 2128.0 19.0 2128.0 1000.0 397.0 0 0 0 0 0 0 0 0 0 0 c 2128.0 194.0 840.0 40.0 0.0 82.0 7.0 164.0 2128.0 26.0 32.0 108.0 187.0 273.0 0 0 0 0 0 0 0 0 0 0 g 479.0 174.0 241.0 37.0 10.0 11.0 12.0 2128.0 11.0 74.0 14.0 83.0 123.0 247.0 0 0 0 0 0 0 0 0 0 0 t 736.0 2128.0 222.0 76.0 2128.0 2128.0 1267.0 98.0 28.0 45.0 2128.0 276.0 1128.0 1211.0 0 0 0 0 0 0 0 0 0 0

MA0786.1_rc_shift1 (POU3F1_rc)
; positions_7nt_m2 versus MA0786.1_rc (POU3F1_rc); m=5/8; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.423591; -wmATTwrCATAw----------- ; cor=; Ncor= a 0 961.0 1167.0 2471.0 63.0 284.0 1048.0 1119.0 232.0 2471.0 21.0 2471.0 1437.0 0 0 0 0 0 0 0 0 0 0 0 c 0 452.0 620.0 128.0 25.0 130.0 21.0 413.0 2471.0 21.0 26.0 128.0 322.0 0 0 0 0 0 0 0 0 0 0 0 g 0 478.0 302.0 95.0 20.0 103.0 1.0 2471.0 13.0 53.0 7.0 186.0 126.0 0 0 0 0 0 0 0 0 0 0 0 t 0 1510.0 382.0 259.0 2471.0 2471.0 1423.0 170.0 37.0 44.0 2471.0 505.0 1034.0 0 0 0 0 0 0 0 0 0 0 0

MA0787.1_rc_shift1 (POU3F2_rc)
; positions_7nt_m2 versus MA0787.1_rc (POU3F2_rc); m=6/8; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.419217; -tmATTwGCATAw----------- ; cor=; Ncor= a 0 562.0 840.0 1292.0 13.0 45.0 604.0 372.0 60.0 1292.0 0.0 1292.0 700.0 0 0 0 0 0 0 0 0 0 0 0 c 0 261.0 452.0 28.0 0.0 32.0 1.0 153.0 1292.0 12.0 25.0 40.0 171.0 0 0 0 0 0 0 0 0 0 0 0 g 0 262.0 165.0 19.0 6.0 16.0 4.0 1292.0 9.0 30.0 16.0 65.0 61.0 0 0 0 0 0 0 0 0 0 0 0 t 0 1292.0 137.0 63.0 1292.0 1292.0 688.0 68.0 19.0 28.0 1292.0 163.0 591.0 0 0 0 0 0 0 0 0 0 0 0

MA0785.1_rc_shift2 (POU2F1_rc)
; positions_7nt_m2 versus MA0785.1_rc (POU2F1_rc); m=7/8; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.409191; --aATTwgCATAwt---------- ; cor=; Ncor= a 0 0 4262.0 10582.0 158.0 787.0 3651.0 3375.0 1326.0 10582.0 43.0 10582.0 5231.0 2075.0 0 0 0 0 0 0 0 0 0 0 c 0 0 2504.0 755.0 51.0 879.0 46.0 1351.0 10582.0 213.0 29.0 474.0 2142.0 1494.0 0 0 0 0 0 0 0 0 0 0 g 0 0 1840.0 457.0 37.0 108.0 33.0 10582.0 82.0 501.0 12.0 1347.0 1046.0 1938.0 0 0 0 0 0 0 0 0 0 0 t 0 0 1976.0 1422.0 10582.0 10582.0 6932.0 300.0 186.0 153.0 10582.0 756.0 5351.0 5076.0 0 0 0 0 0 0 0 0 0 0

MA1115.1_rc_shift2 (POU5F1_rc)
; positions_7nt_m2 versus MA1115.1_rc (POU5F1_rc); m=8/8; ncol2=11; w=11; offset=2; strand=R; shift=2; score=0.40003; --haTTTGCATww----------- ; cor=; Ncor= a 0 0 3637.0 6383.0 307.0 838.0 1108.0 1723.0 634.0 12834.0 70.0 4818.0 4846.0 0 0 0 0 0 0 0 0 0 0 0 c 0 0 3551.0 2071.0 257.0 1026.0 118.0 548.0 11571.0 67.0 229.0 1908.0 1996.0 0 0 0 0 0 0 0 0 0 0 0 g 0 0 2450.0 2104.0 270.0 690.0 132.0 10310.0 192.0 130.0 122.0 2785.0 1290.0 0 0 0 0 0 0 0 0 0 0 0 t 0 0 3476.0 2556.0 12280.0 10560.0 11756.0 533.0 717.0 83.0 12693.0 3603.0 4982.0 0 0 0 0 0 0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: positions_7nt_m5_shift0 ; 8 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
positions_7nt_m5_shift0 (positions_7nt_m5)
; positions_7nt_m5; m=0 (reference); ncol1=24; shift=0; ncol=24; gyrtatgygCATATGCAaATryry ; Alignment reference a 76 47 141 24 194 34 68 21 60 29 273 10 272 11 16 19 247 156 248 27 89 74 117 62 c 60 105 43 67 36 50 30 152 19 225 7 29 8 15 14 261 14 64 11 34 26 83 49 110 g 124 78 79 34 49 19 166 18 191 37 17 8 23 7 264 7 45 26 40 31 174 54 98 56 t 55 85 52 190 36 212 51 124 45 24 18 268 12 282 21 28 9 69 16 223 26 104 51 87

MA0507.1_rc_shift10 (POU2F2_rc)
; positions_7nt_m5 versus MA0507.1_rc (POU2F2_rc); m=1/7; ncol2=13; w=13; offset=10; strand=R; shift=10; score=0.495057; ----------wyATGCAAATkmr- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 1225.0 476.0 2285.0 0.0 16.0 132.0 2287.0 2029.0 2287.0 251.0 442.0 898.0 835.0 0 c 0 0 0 0 0 0 0 0 0 0 107.0 613.0 0.0 0.0 0.0 1997.0 0.0 0.0 0.0 1.0 415.0 593.0 402.0 0 g 0 0 0 0 0 0 0 0 0 0 361.0 39.0 2.0 30.0 2271.0 0.0 0.0 2.0 0.0 19.0 825.0 266.0 635.0 0 t 0 0 0 0 0 0 0 0 0 0 594.0 1159.0 0.0 2257.0 0.0 158.0 0.0 256.0 0.0 2016.0 605.0 530.0 415.0 0

MA0627.2_shift9 (POU2F3)
; positions_7nt_m5 versus MA0627.2 (POU2F3); m=2/7; ncol2=13; w=13; offset=9; strand=D; shift=9; score=0.477061; ---------watATGCAAATww-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 17399.0 26660.0 8522.0 54550.0 1090.0 980.0 946.0 54915.0 51382.0 55302.0 5115.0 16288.0 18907.0 0 0 c 0 0 0 0 0 0 0 0 0 11383.0 6824.0 6885.0 194.0 322.0 251.0 50288.0 80.0 567.0 164.0 3478.0 10595.0 11936.0 0 0 g 0 0 0 0 0 0 0 0 0 10722.0 8770.0 3029.0 354.0 1251.0 51971.0 1079.0 138.0 804.0 233.0 4098.0 13237.0 7941.0 0 0 t 0 0 0 0 0 0 0 0 0 16525.0 13775.0 37593.0 931.0 53366.0 2827.0 3716.0 896.0 3276.0 330.0 43338.0 15909.0 17245.0 0 0

MA0784.1_shift9 (POU1F1)
; positions_7nt_m5 versus MA0784.1 (POU1F1); m=3/7; ncol2=14; w=14; offset=9; strand=D; shift=9; score=0.45815; ---------awTATGCwAATkAg- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 1211.0 1128.0 276.0 2128.0 45.0 28.0 98.0 1267.0 2128.0 2128.0 76.0 222.0 2128.0 736.0 0 c 0 0 0 0 0 0 0 0 0 247.0 123.0 83.0 14.0 74.0 11.0 2128.0 12.0 11.0 10.0 37.0 241.0 174.0 479.0 0 g 0 0 0 0 0 0 0 0 0 273.0 187.0 108.0 32.0 26.0 2128.0 164.0 7.0 82.0 0.0 40.0 840.0 194.0 2128.0 0 t 0 0 0 0 0 0 0 0 0 397.0 1000.0 2128.0 19.0 2128.0 176.0 536.0 861.0 85.0 3.0 2128.0 1287.0 273.0 547.0 0

MA0786.1_shift10 (POU3F1)
; positions_7nt_m5 versus MA0786.1 (POU3F1); m=4/7; ncol2=12; w=12; offset=10; strand=D; shift=10; score=0.422426; ----------wTATGywAATkw-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 1034.0 505.0 2471.0 44.0 37.0 170.0 1423.0 2471.0 2471.0 259.0 382.0 1510.0 0 0 c 0 0 0 0 0 0 0 0 0 0 126.0 186.0 7.0 53.0 13.0 2471.0 1.0 103.0 20.0 95.0 302.0 478.0 0 0 g 0 0 0 0 0 0 0 0 0 0 322.0 128.0 26.0 21.0 2471.0 413.0 21.0 130.0 25.0 128.0 620.0 452.0 0 0 t 0 0 0 0 0 0 0 0 0 0 1437.0 2471.0 21.0 2471.0 232.0 1119.0 1048.0 284.0 63.0 2471.0 1167.0 961.0 0 0

MA0787.1_shift10 (POU3F2)
; positions_7nt_m5 versus MA0787.1 (POU3F2); m=5/7; ncol2=12; w=12; offset=10; strand=D; shift=10; score=0.419515; ----------wTATGCwAATka-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 591.0 163.0 1292.0 28.0 19.0 68.0 688.0 1292.0 1292.0 63.0 137.0 1292.0 0 0 c 0 0 0 0 0 0 0 0 0 0 61.0 65.0 16.0 30.0 9.0 1292.0 4.0 16.0 6.0 19.0 165.0 262.0 0 0 g 0 0 0 0 0 0 0 0 0 0 171.0 40.0 25.0 12.0 1292.0 153.0 1.0 32.0 0.0 28.0 452.0 261.0 0 0 t 0 0 0 0 0 0 0 0 0 0 700.0 1292.0 0.0 1292.0 60.0 372.0 604.0 45.0 13.0 1292.0 840.0 562.0 0 0

MA0785.1_shift9 (POU2F1)
; positions_7nt_m5 versus MA0785.1 (POU2F1); m=6/7; ncol2=12; w=12; offset=9; strand=D; shift=9; score=0.418638; ---------awTATGcwAATt--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 5076.0 5351.0 756.0 10582.0 153.0 186.0 300.0 6932.0 10582.0 10582.0 1422.0 1976.0 0 0 0 c 0 0 0 0 0 0 0 0 0 1938.0 1046.0 1347.0 12.0 501.0 82.0 10582.0 33.0 108.0 37.0 457.0 1840.0 0 0 0 g 0 0 0 0 0 0 0 0 0 1494.0 2142.0 474.0 29.0 213.0 10582.0 1351.0 46.0 879.0 51.0 755.0 2504.0 0 0 0 t 0 0 0 0 0 0 0 0 0 2075.0 5231.0 10582.0 43.0 10582.0 1326.0 3375.0 3651.0 787.0 158.0 10582.0 4262.0 0 0 0

MA0788.1_shift9 (POU3F3)
; positions_7nt_m5 versus MA0788.1 (POU3F3); m=7/7; ncol2=13; w=13; offset=9; strand=D; shift=9; score=0.405263; ---------wwTATGCwAATtw-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 576.0 440.0 129.0 1078.0 25.0 22.0 28.0 506.0 1078.0 1078.0 53.0 240.0 536.0 0 0 c 0 0 0 0 0 0 0 0 0 75.0 41.0 57.0 11.0 33.0 10.0 1078.0 4.0 11.0 6.0 20.0 141.0 85.0 0 0 g 0 0 0 0 0 0 0 0 0 137.0 131.0 64.0 12.0 49.0 1078.0 118.0 1.0 77.0 15.0 12.0 237.0 115.0 0 0 t 0 0 0 0 0 0 0 0 0 290.0 637.0 1078.0 30.0 1078.0 86.0 343.0 572.0 79.0 14.0 1078.0 1078.0 542.0 0 0

One-to-n matrix alignment; reference matrix: positions_6nt_m1_shift0 ; 6 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
positions_6nt_m1_shift0 (positions_6nt_m1)
; positions_6nt_m1; m=0 (reference); ncol1=24; shift=0; ncol=24; ydyatwTGCATATGCAwatryayr ; Alignment reference a 139 199 105 312 70 227 37 64 50 644 45 604 39 42 122 617 299 438 132 222 173 278 144 209 c 189 144 244 151 173 69 58 18 586 10 45 22 21 41 504 13 113 34 113 124 229 143 200 160 g 168 182 127 115 35 119 14 508 34 21 20 45 8 578 19 57 73 172 151 274 127 166 167 190 t 218 189 238 136 436 299 605 124 44 39 604 43 646 53 69 27 229 70 318 94 185 127 203 155

MA0507.1_rc_shift9 (POU2F2_rc)
; positions_6nt_m1 versus MA0507.1_rc (POU2F2_rc); m=1/5; ncol2=13; w=13; offset=9; strand=R; shift=9; score=0.472555; ---------wyATGCAAATkmr-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 1225.0 476.0 2285.0 0.0 16.0 132.0 2287.0 2029.0 2287.0 251.0 442.0 898.0 835.0 0 0 c 0 0 0 0 0 0 0 0 0 107.0 613.0 0.0 0.0 0.0 1997.0 0.0 0.0 0.0 1.0 415.0 593.0 402.0 0 0 g 0 0 0 0 0 0 0 0 0 361.0 39.0 2.0 30.0 2271.0 0.0 0.0 2.0 0.0 19.0 825.0 266.0 635.0 0 0 t 0 0 0 0 0 0 0 0 0 594.0 1159.0 0.0 2257.0 0.0 158.0 0.0 256.0 0.0 2016.0 605.0 530.0 415.0 0 0

MA0627.2_rc_shift1 (POU2F3_rc)
; positions_6nt_m1 versus MA0627.2_rc (POU2F3_rc); m=2/5; ncol2=13; w=13; offset=1; strand=R; shift=1; score=0.448842; -wwATTTGCATatw---------- ; cor=; Ncor= a 0 17245.0 15909.0 43338.0 330.0 3276.0 896.0 3716.0 2827.0 53366.0 931.0 37593.0 13775.0 16525.0 0 0 0 0 0 0 0 0 0 0 c 0 7941.0 13237.0 4098.0 233.0 804.0 138.0 1079.0 51971.0 1251.0 354.0 3029.0 8770.0 10722.0 0 0 0 0 0 0 0 0 0 0 g 0 11936.0 10595.0 3478.0 164.0 567.0 80.0 50288.0 251.0 322.0 194.0 6885.0 6824.0 11383.0 0 0 0 0 0 0 0 0 0 0 t 0 18907.0 16288.0 5115.0 55302.0 51382.0 54915.0 946.0 980.0 1090.0 54550.0 8522.0 26660.0 17399.0 0 0 0 0 0 0 0 0 0 0

MA0142.1_rc_shift3 (Pou5f1::Sox2_rc)
; positions_6nt_m1 versus MA0142.1_rc (Pou5f1::Sox2_rc); m=3/5; ncol2=15; w=15; offset=3; strand=R; shift=3; score=0.439087; ---aTtTGCATrwsAAwr------ ; cor=; Ncor= a 0 0 0 837.0 53.0 92.0 269.0 196.0 104.0 1332.0 80.0 612.0 907.0 63.0 1231.0 1270.0 701.0 389.0 0 0 0 0 0 0 c 0 0 0 207.0 75.0 315.0 30.0 129.0 1239.0 15.0 24.0 186.0 29.0 825.0 79.0 36.0 28.0 66.0 0 0 0 0 0 0 g 0 0 0 119.0 33.0 68.0 16.0 1029.0 16.0 5.0 30.0 365.0 18.0 363.0 12.0 50.0 58.0 846.0 0 0 0 0 0 0 t 0 0 0 198.0 1200.0 887.0 1050.0 14.0 10.0 17.0 1235.0 206.0 415.0 118.0 47.0 11.0 579.0 63.0 0 0 0 0 0 0

MA0784.1_rc_shift0 (POU1F1_rc)
; positions_6nt_m1 versus MA0784.1_rc (POU1F1_rc); m=4/5; ncol2=14; w=14; offset=0; strand=R; shift=0; score=0.418074; cTmATTwGCATAwt---------- ; cor=; Ncor= a 547.0 273.0 1287.0 2128.0 3.0 85.0 861.0 536.0 176.0 2128.0 19.0 2128.0 1000.0 397.0 0 0 0 0 0 0 0 0 0 0 c 2128.0 194.0 840.0 40.0 0.0 82.0 7.0 164.0 2128.0 26.0 32.0 108.0 187.0 273.0 0 0 0 0 0 0 0 0 0 0 g 479.0 174.0 241.0 37.0 10.0 11.0 12.0 2128.0 11.0 74.0 14.0 83.0 123.0 247.0 0 0 0 0 0 0 0 0 0 0 t 736.0 2128.0 222.0 76.0 2128.0 2128.0 1267.0 98.0 28.0 45.0 2128.0 276.0 1128.0 1211.0 0 0 0 0 0 0 0 0 0 0

MA0786.1_rc_shift1 (POU3F1_rc)
; positions_6nt_m1 versus MA0786.1_rc (POU3F1_rc); m=5/5; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.400107; -wmATTwrCATAw----------- ; cor=; Ncor= a 0 961.0 1167.0 2471.0 63.0 284.0 1048.0 1119.0 232.0 2471.0 21.0 2471.0 1437.0 0 0 0 0 0 0 0 0 0 0 0 c 0 452.0 620.0 128.0 25.0 130.0 21.0 413.0 2471.0 21.0 26.0 128.0 322.0 0 0 0 0 0 0 0 0 0 0 0 g 0 478.0 302.0 95.0 20.0 103.0 1.0 2471.0 13.0 53.0 7.0 186.0 126.0 0 0 0 0 0 0 0 0 0 0 0 t 0 1510.0 382.0 259.0 2471.0 2471.0 1423.0 170.0 37.0 44.0 2471.0 505.0 1034.0 0 0 0 0 0 0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: positions_6nt_m4_shift0 ; 4 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
positions_6nt_m4_shift0 (positions_6nt_m4)
; positions_6nt_m4; m=0 (reference); ncol1=24; shift=0; ncol=24; rywywyaTgcAwATGCATATgcay ; Alignment reference a 218 144 208 145 193 105 459 61 122 88 542 245 539 11 41 42 682 117 597 88 137 149 349 159 c 165 208 158 209 141 349 85 107 56 440 50 132 57 49 9 646 13 70 24 90 80 370 105 197 g 208 160 183 168 187 99 110 58 390 86 72 50 79 13 669 24 41 51 89 60 419 74 181 140 t 163 242 205 232 233 201 100 528 186 140 90 327 79 681 35 42 18 516 44 516 118 161 119 258

MA0507.1_rc_shift10 (POU2F2_rc)
; positions_6nt_m4 versus MA0507.1_rc (POU2F2_rc); m=1/3; ncol2=13; w=13; offset=10; strand=R; shift=10; score=0.470354; ----------wyATGCAAATkmr- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 1225.0 476.0 2285.0 0.0 16.0 132.0 2287.0 2029.0 2287.0 251.0 442.0 898.0 835.0 0 c 0 0 0 0 0 0 0 0 0 0 107.0 613.0 0.0 0.0 0.0 1997.0 0.0 0.0 0.0 1.0 415.0 593.0 402.0 0 g 0 0 0 0 0 0 0 0 0 0 361.0 39.0 2.0 30.0 2271.0 0.0 0.0 2.0 0.0 19.0 825.0 266.0 635.0 0 t 0 0 0 0 0 0 0 0 0 0 594.0 1159.0 0.0 2257.0 0.0 158.0 0.0 256.0 0.0 2016.0 605.0 530.0 415.0 0

MA0142.1_shift5 (Pou5f1::Sox2)
; positions_6nt_m4 versus MA0142.1 (Pou5f1::Sox2); m=2/3; ncol2=15; w=15; offset=5; strand=D; shift=5; score=0.464113; -----ywTTswyATGCAaAt---- ; cor=; Ncor= a 0 0 0 0 0 63.0 579.0 11.0 47.0 118.0 415.0 206.0 1235.0 17.0 10.0 14.0 1050.0 887.0 1200.0 198.0 0 0 0 0 c 0 0 0 0 0 846.0 58.0 50.0 12.0 363.0 18.0 365.0 30.0 5.0 16.0 1029.0 16.0 68.0 33.0 119.0 0 0 0 0 g 0 0 0 0 0 66.0 28.0 36.0 79.0 825.0 29.0 186.0 24.0 15.0 1239.0 129.0 30.0 315.0 75.0 207.0 0 0 0 0 t 0 0 0 0 0 389.0 701.0 1270.0 1231.0 63.0 907.0 612.0 80.0 1332.0 104.0 196.0 269.0 92.0 53.0 837.0 0 0 0 0

MA0627.2_shift9 (POU2F3)
; positions_6nt_m4 versus MA0627.2 (POU2F3); m=3/3; ncol2=13; w=13; offset=9; strand=D; shift=9; score=0.442804; ---------watATGCAAATww-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 17399.0 26660.0 8522.0 54550.0 1090.0 980.0 946.0 54915.0 51382.0 55302.0 5115.0 16288.0 18907.0 0 0 c 0 0 0 0 0 0 0 0 0 11383.0 6824.0 6885.0 194.0 322.0 251.0 50288.0 80.0 567.0 164.0 3478.0 10595.0 11936.0 0 0 g 0 0 0 0 0 0 0 0 0 10722.0 8770.0 3029.0 354.0 1251.0 51971.0 1079.0 138.0 804.0 233.0 4098.0 13237.0 7941.0 0 0 t 0 0 0 0 0 0 0 0 0 16525.0 13775.0 37593.0 931.0 53366.0 2827.0 3716.0 896.0 3276.0 330.0 43338.0 15909.0 17245.0 0 0

One-to-n matrix alignment; reference matrix: positions_6nt_m3_shift0 ; 5 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
positions_6nt_m3_shift0 (positions_6nt_m3)
; positions_6nt_m3; m=0 (reference); ncol1=24; shift=0; ncol=24; rywtaTGCATwTGCATAtgyryat ; Alignment reference a 91 59 83 26 192 14 26 21 261 18 149 13 25 23 261 28 214 55 62 55 114 53 104 57 c 61 81 39 60 24 21 18 236 9 36 22 16 7 239 5 31 12 31 35 124 41 118 46 64 g 77 51 61 20 44 13 209 8 15 16 36 3 242 9 16 17 44 30 162 35 97 43 70 58 t 63 101 109 186 32 244 39 27 7 222 85 260 18 21 10 216 22 176 33 78 40 78 72 113

MA0507.1_shift5 (POU2F2)
; positions_6nt_m3 versus MA0507.1 (POU2F2); m=1/4; ncol2=13; w=13; offset=5; strand=D; shift=5; score=0.453038; -----ykmATTTGCATrw------ ; cor=; Ncor= a 0 0 0 0 0 415.0 530.0 605.0 2016.0 0.0 256.0 0.0 158.0 0.0 2257.0 0.0 1159.0 594.0 0 0 0 0 0 0 c 0 0 0 0 0 635.0 266.0 825.0 19.0 0.0 2.0 0.0 0.0 2271.0 30.0 2.0 39.0 361.0 0 0 0 0 0 0 g 0 0 0 0 0 402.0 593.0 415.0 1.0 0.0 0.0 0.0 1997.0 0.0 0.0 0.0 613.0 107.0 0 0 0 0 0 0 t 0 0 0 0 0 835.0 898.0 442.0 251.0 2287.0 2029.0 2287.0 132.0 16.0 0.0 2285.0 476.0 1225.0 0 0 0 0 0 0

MA0627.2_rc_shift6 (POU2F3_rc)
; positions_6nt_m3 versus MA0627.2_rc (POU2F3_rc); m=2/4; ncol2=13; w=13; offset=6; strand=R; shift=6; score=0.443694; ------wwATTTGCATatw----- ; cor=; Ncor= a 0 0 0 0 0 0 17245.0 15909.0 43338.0 330.0 3276.0 896.0 3716.0 2827.0 53366.0 931.0 37593.0 13775.0 16525.0 0 0 0 0 0 c 0 0 0 0 0 0 7941.0 13237.0 4098.0 233.0 804.0 138.0 1079.0 51971.0 1251.0 354.0 3029.0 8770.0 10722.0 0 0 0 0 0 g 0 0 0 0 0 0 11936.0 10595.0 3478.0 164.0 567.0 80.0 50288.0 251.0 322.0 194.0 6885.0 6824.0 11383.0 0 0 0 0 0 t 0 0 0 0 0 0 18907.0 16288.0 5115.0 55302.0 51382.0 54915.0 946.0 980.0 1090.0 54550.0 8522.0 26660.0 17399.0 0 0 0 0 0

MA0142.1_rc_shift8 (Pou5f1::Sox2_rc)
; positions_6nt_m3 versus MA0142.1_rc (Pou5f1::Sox2_rc); m=3/4; ncol2=15; w=15; offset=8; strand=R; shift=8; score=0.438656; --------aTtTGCATrwsAAwr- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 837.0 53.0 92.0 269.0 196.0 104.0 1332.0 80.0 612.0 907.0 63.0 1231.0 1270.0 701.0 389.0 0 c 0 0 0 0 0 0 0 0 207.0 75.0 315.0 30.0 129.0 1239.0 15.0 24.0 186.0 29.0 825.0 79.0 36.0 28.0 66.0 0 g 0 0 0 0 0 0 0 0 119.0 33.0 68.0 16.0 1029.0 16.0 5.0 30.0 365.0 18.0 363.0 12.0 50.0 58.0 846.0 0 t 0 0 0 0 0 0 0 0 198.0 1200.0 887.0 1050.0 14.0 10.0 17.0 1235.0 206.0 415.0 118.0 47.0 11.0 579.0 63.0 0

MA0785.1_rc_shift7 (POU2F1_rc)
; positions_6nt_m3 versus MA0785.1_rc (POU2F1_rc); m=4/4; ncol2=12; w=12; offset=7; strand=R; shift=7; score=0.403288; -------aATTwgCATAwt----- ; cor=; Ncor= a 0 0 0 0 0 0 0 4262.0 10582.0 158.0 787.0 3651.0 3375.0 1326.0 10582.0 43.0 10582.0 5231.0 2075.0 0 0 0 0 0 c 0 0 0 0 0 0 0 2504.0 755.0 51.0 879.0 46.0 1351.0 10582.0 213.0 29.0 474.0 2142.0 1494.0 0 0 0 0 0 g 0 0 0 0 0 0 0 1840.0 457.0 37.0 108.0 33.0 10582.0 82.0 501.0 12.0 1347.0 1046.0 1938.0 0 0 0 0 0 t 0 0 0 0 0 0 0 1976.0 1422.0 10582.0 10582.0 6932.0 300.0 186.0 153.0 10582.0 756.0 5351.0 5076.0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv3_m2_shift3 (oligos_6nt_mkv3_m2)				; oligos_6nt_mkv3_m2; m=0 (reference); ncol1=13; shift=3; ncol=17; ---ccCCCCACCCCcc- ; Alignment reference a 0 0 0 238 226 62 65 35 22 821 29 28 29 113 220 281 0 c 0 0 0 512 445 912 984 1089 1100 109 1080 1067 1076 895 515 438 0 g 0 0 0 228 269 95 80 43 44 171 55 65 49 94 241 255 0 t 0 0 0 217 255 126 66 28 29 94 31 35 41 93 219 221 0
MA0039.4_shift3 (KLF4)				; oligos_6nt_mkv3_m2 versus MA0039.4 (KLF4); m=1/20; ncol2=12; w=12; offset=0; strand=D; shift=3; score=0.882519; ---ssCCCCACCChs-- ; cor=; Ncor= a 0 0 0 12570.0 11487.0 2465.0 2105.0 7021.0 1173.0 45602.0 852.0 1617.0 1202.0 16264.0 9959.0 0 0 c 0 0 0 17520.0 14038.0 49209.0 47865.0 45405.0 52875.0 161.0 52366.0 51112.0 51045.0 18249.0 19217.0 0 0 g 0 0 0 14243.0 18473.0 1583.0 1214.0 1422.0 793.0 6598.0 1470.0 1870.0 1005.0 6292.0 14422.0 0 0 t 0 0 0 11484.0 11819.0 2560.0 4633.0 1969.0 976.0 3456.0 1129.0 1218.0 2565.0 15012.0 12219.0 0 0
MA1653.1_shift3 (ZNF148)				; oligos_6nt_mkv3_m2 versus MA1653.1 (ZNF148); m=2/20; ncol2=12; w=12; offset=0; strand=D; shift=3; score=0.801115; ---ysCCCCTCCCcc-- ; cor=; Ncor= a 0 0 0 1399.0 1263.0 82.0 132.0 136.0 89.0 133.0 66.0 352.0 442.0 846.0 841.0 0 0 c 0 0 0 4593.0 4057.0 10799.0 10396.0 10526.0 10833.0 14.0 10954.0 9922.0 9283.0 7239.0 7114.0 0 0 g 0 0 0 2241.0 3215.0 205.0 471.0 401.0 211.0 1012.0 112.0 460.0 392.0 1924.0 2064.0 0 0 t 0 0 0 2966.0 2664.0 113.0 200.0 136.0 66.0 10040.0 67.0 465.0 1082.0 1190.0 1180.0 0 0
MA0753.2_shift3 (ZNF740)				; oligos_6nt_mkv3_m2 versus MA0753.2 (ZNF740); m=3/20; ncol2=13; w=13; offset=0; strand=D; shift=3; score=0.770554; ---cyrCCCCCCCCAc- ; cor=; Ncor= a 0 0 0 186.0 162.0 727.0 60.0 110.0 18.0 22.0 23.0 10.0 2.0 115.0 1055.0 207.0 0 c 0 0 0 502.0 677.0 343.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 239.0 1055.0 0 g 0 0 0 182.0 72.0 1055.0 37.0 14.0 4.0 7.0 3.0 7.0 3.0 6.0 68.0 54.0 0 t 0 0 0 185.0 378.0 312.0 49.0 1.0 16.0 15.0 11.0 6.0 3.0 4.0 134.0 246.0 0
MA0746.2_shift3 (SP3)				; oligos_6nt_mkv3_m2 versus MA0746.2 (SP3); m=4/20; ncol2=13; w=13; offset=0; strand=D; shift=3; score=0.726174; ---srCCACGCCCmCy- ; cor=; Ncor= a 0 0 0 1267.0 2146.0 664.0 160.0 5253.0 6.0 465.0 0.0 0.0 2.0 3430.0 556.0 1516.0 0 c 0 0 0 1884.0 531.0 6591.0 6591.0 1338.0 6591.0 0.0 6591.0 6591.0 6591.0 3160.0 5116.0 2608.0 0 g 0 0 0 1895.0 4445.0 226.0 54.0 2.0 0.0 6591.0 0.0 0.0 2.0 39.0 297.0 524.0 0 t 0 0 0 1545.0 421.0 345.0 202.0 11.0 12.0 504.0 0.0 9.0 718.0 552.0 1475.0 1943.0 0
MA1513.1_shift4 (KLF15)				; oligos_6nt_mkv3_m2 versus MA1513.1 (KLF15); m=5/20; ncol2=11; w=11; offset=1; strand=D; shift=4; score=0.72069; ----scCCCGCCCcs-- ; cor=; Ncor= a 0 0 0 0 1184.0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 1566.0 1067.0 0 0 c 0 0 0 0 2903.0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 6267.0 5013.0 0 0 g 0 0 0 0 5538.0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 1934.0 3124.0 0 0 t 0 0 0 0 1744.0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 1602.0 2165.0 0 0
MA0599.1_shift4 (KLF5)				; oligos_6nt_mkv3_m2 versus MA0599.1 (KLF5); m=6/20; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.705471; ----gCCMCrCCCh--- ; cor=; Ncor= a 0 0 0 0 1429.0 0.0 0.0 3477.0 0.0 5051.0 0.0 0.0 0.0 3915.0 0 0 0 c 0 0 0 0 2023.0 11900.0 12008.0 9569.0 13611.0 0.0 13611.0 13611.0 13135.0 5595.0 0 0 0 g 0 0 0 0 7572.0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 0.0 0 0 0 t 0 0 0 0 2587.0 1711.0 1603.0 565.0 0.0 3378.0 0.0 0.0 476.0 4101.0 0 0 0
MA1564.1_shift4 (SP9)				; oligos_6nt_mkv3_m2 versus MA1564.1 (SP9); m=7/20; ncol2=12; w=12; offset=1; strand=D; shift=4; score=0.701862; ----rcCmCGCCCmcy- ; cor=; Ncor= a 0 0 0 0 834.0 566.0 321.0 2451.0 2.0 211.0 22.0 0.0 39.0 1192.0 188.0 420.0 0 c 0 0 0 0 440.0 2451.0 2451.0 1127.0 2451.0 200.0 2451.0 2451.0 2451.0 1259.0 1863.0 1167.0 0 g 0 0 0 0 952.0 309.0 113.0 56.0 17.0 2451.0 0.0 0.0 24.0 38.0 191.0 204.0 0 t 0 0 0 0 226.0 518.0 284.0 96.0 9.0 173.0 14.0 30.0 412.0 353.0 588.0 660.0 0
MA1522.1_shift3 (MAZ)				; oligos_6nt_mkv3_m2 versus MA1522.1 (MAZ); m=8/20; ncol2=11; w=11; offset=0; strand=D; shift=3; score=0.697711; ---ssCCCCTCCcc--- ; cor=; Ncor= a 0 0 0 2480.0 1819.0 17.0 49.0 36.0 39.0 6.0 90.0 23.0 1109.0 2016.0 0 0 0 c 0 0 0 5198.0 5068.0 14945.0 14630.0 14731.0 14676.0 0.0 14961.0 14944.0 9372.0 6775.0 0 0 0 g 0 0 0 4277.0 5163.0 75.0 384.0 290.0 347.0 130.0 8.0 96.0 1768.0 2539.0 0 0 0 t 0 0 0 3108.0 3013.0 26.0 0.0 6.0 1.0 14927.0 4.0 0.0 2814.0 3733.0 0 0 0
MA1515.1_shift3 (KLF2)				; oligos_6nt_mkv3_m2 versus MA1515.1 (KLF2); m=9/20; ncol2=11; w=11; offset=0; strand=D; shift=3; score=0.684849; ---srCCmCrCCCw--- ; cor=; Ncor= a 0 0 0 1054.0 2510.0 741.0 403.0 4622.0 0.0 1702.0 0.0 128.0 68.0 1838.0 0 0 0 c 0 0 0 1376.0 1103.0 4622.0 4622.0 2265.0 4622.0 274.0 4622.0 4622.0 4622.0 1142.0 0 0 0 g 0 0 0 1320.0 2112.0 495.0 186.0 1060.0 0.0 2920.0 49.0 195.0 105.0 389.0 0 0 0 t 0 0 0 872.0 433.0 346.0 312.0 214.0 78.0 167.0 22.0 9.0 444.0 1253.0 0 0 0
MA0741.1_shift4 (KLF16)				; oligos_6nt_mkv3_m2 versus MA0741.1 (KLF16); m=10/20; ncol2=11; w=11; offset=1; strand=D; shift=4; score=0.677043; ----gmCMCgCCCMC-- ; cor=; Ncor= a 0 0 0 0 666.0 901.0 62.0 1150.0 66.0 497.0 8.0 2.0 16.0 437.0 32.0 0 0 c 0 0 0 0 535.0 1612.0 1612.0 461.0 1612.0 173.0 1612.0 1612.0 1612.0 1175.0 1612.0 0 0 g 0 0 0 0 1612.0 77.0 6.0 32.0 17.0 1612.0 0.0 8.0 3.0 19.0 23.0 0 0 t 0 0 0 0 240.0 116.0 45.0 0.0 19.0 403.0 0.0 0.0 97.0 40.0 370.0 0 0
MA0747.1_shift4 (SP8)				; oligos_6nt_mkv3_m2 versus MA0747.1 (SP8); m=11/20; ncol2=12; w=12; offset=1; strand=D; shift=4; score=0.666356; ----rmCACgCCCmCy- ; cor=; Ncor= a 0 0 0 0 52.0 54.0 25.0 133.0 7.0 25.0 5.0 2.0 0.0 90.0 13.0 31.0 0 c 0 0 0 0 27.0 113.0 167.0 33.0 167.0 37.0 167.0 167.0 167.0 77.0 167.0 52.0 0 g 0 0 0 0 78.0 0.0 0.0 1.0 1.0 167.0 6.0 3.0 4.0 6.0 21.0 1.0 0 t 0 0 0 0 10.0 4.0 13.0 2.0 5.0 39.0 2.0 0.0 15.0 3.0 39.0 82.0 0
MA1511.1_shift4 (KLF10)				; oligos_6nt_mkv3_m2 versus MA1511.1 (KLF10); m=12/20; ncol2=11; w=11; offset=1; strand=D; shift=4; score=0.661016; ----gmCACrCCCmy-- ; cor=; Ncor= a 0 0 0 0 4746.0 6633.0 633.0 18751.0 238.0 13506.0 1.0 0.0 0.0 7545.0 934.0 0 0 c 0 0 0 0 2435.0 12654.0 19619.0 1663.0 19907.0 11.0 19995.0 19994.0 19244.0 11403.0 13118.0 0 0 g 0 0 0 0 14086.0 1299.0 98.0 1723.0 3.0 6234.0 2.0 0.0 0.0 587.0 770.0 0 0 t 0 0 0 0 1251.0 1373.0 485.0 6.0 157.0 543.0 0.0 0.0 2198.0 2686.0 6274.0 0 0
MA0493.1_shift3 (Klf1)				; oligos_6nt_mkv3_m2 versus MA0493.1 (Klf1); m=13/20; ncol2=11; w=11; offset=0; strand=D; shift=3; score=0.64254; ---rrCCACACCCw--- ; cor=; Ncor= a 0 0 0 150.0 167.0 67.0 13.0 404.0 0.0 400.0 0.0 0.0 0.0 280.0 0 0 0 c 0 0 0 76.0 40.0 396.0 461.0 118.0 526.0 0.0 526.0 526.0 508.0 35.0 0 0 0 g 0 0 0 202.0 305.0 32.0 0.0 0.0 0.0 97.0 0.0 0.0 0.0 0.0 0 0 0 t 0 0 0 98.0 14.0 31.0 52.0 4.0 0.0 29.0 0.0 0.0 18.0 211.0 0 0 0
MA1512.1_shift4 (KLF11)				; oligos_6nt_mkv3_m2 versus MA1512.1 (KLF11); m=14/20; ncol2=11; w=11; offset=1; strand=D; shift=4; score=0.620539; ----gcCACGCCCmC-- ; cor=; Ncor= a 0 0 0 0 1882.0 2022.0 650.0 8655.0 0.0 2426.0 11.0 1.0 0.0 4689.0 581.0 0 0 c 0 0 0 0 2054.0 5549.0 8662.0 1289.0 9142.0 52.0 9161.0 9166.0 8941.0 4226.0 8403.0 0 0 g 0 0 0 0 3930.0 401.0 156.0 115.0 0.0 8291.0 18.0 20.0 4.0 69.0 358.0 0 0 t 0 0 0 0 1299.0 1192.0 506.0 27.0 38.0 349.0 23.0 7.0 885.0 761.0 1281.0 0 0
MA1517.1_shift3 (KLF6)				; oligos_6nt_mkv3_m2 versus MA1517.1 (KLF6); m=15/20; ncol2=11; w=11; offset=0; strand=D; shift=3; score=0.616687; ---srcCACRCCCm--- ; cor=; Ncor= a 0 0 0 443.0 1035.0 569.0 432.0 2192.0 0.0 1024.0 0.0 25.0 71.0 955.0 0 0 0 c 0 0 0 624.0 490.0 2192.0 2192.0 284.0 2192.0 0.0 2192.0 2192.0 2192.0 665.0 0 0 0 g 0 0 0 626.0 1157.0 332.0 298.0 60.0 0.0 2192.0 0.0 60.0 12.0 52.0 0 0 0 t 0 0 0 499.0 136.0 219.0 140.0 60.0 24.0 0.0 0.0 0.0 64.0 520.0 0 0 0
MA1107.2_shift2 (KLF9)				; oligos_6nt_mkv3_m2 versus MA1107.2 (KLF9); m=16/20; ncol2=16; w=13; offset=-1; strand=D; shift=2; score=0.588802; --crgCCACACCCAChy ; cor=; Ncor= a 0 0 5359.0 8015.0 2862.0 4664.0 287.0 21899.0 221.0 19187.0 224.0 2428.0 146.0 18837.0 792.0 6948.0 4110.0 c 0 0 10412.0 5108.0 4342.0 17839.0 24709.0 2559.0 24863.0 1070.0 24365.0 22117.0 24682.0 4339.0 20644.0 8797.0 10520.0 g 0 0 5200.0 7779.0 16852.0 1660.0 291.0 708.0 353.0 4340.0 735.0 605.0 205.0 852.0 1778.0 3289.0 4423.0 t 0 0 4608.0 4677.0 1523.0 1416.0 292.0 413.0 142.0 982.0 255.0 429.0 546.0 1551.0 2365.0 6545.0 6526.0
MA0516.2_shift0 (SP2)				; oligos_6nt_mkv3_m2 versus MA0516.2 (SP2); m=17/20; ncol2=17; w=13; offset=-3; strand=D; shift=0; score=0.585771; mTAAGyCCCGCCCmCyy ; cor=; Ncor= a 256.0 53.0 613.0 753.0 54.0 34.0 14.0 16.0 4.0 82.0 0.0 5.0 23.0 402.0 22.0 109.0 150.0 c 308.0 171.0 76.0 84.0 127.0 456.0 774.0 786.0 788.0 52.0 795.0 793.0 774.0 390.0 679.0 221.0 203.0 g 123.0 57.0 0.0 33.0 791.0 8.0 1.0 13.0 22.0 780.0 0.0 26.0 0.0 22.0 1.0 0.0 88.0 t 106.0 608.0 180.0 67.0 43.0 327.0 0.0 8.0 12.0 45.0 18.0 7.0 27.0 17.0 101.0 503.0 352.0
MA1578.1_shift6 (VEZF1)				; oligos_6nt_mkv3_m2 versus MA1578.1 (VEZF1); m=18/20; ncol2=10; w=10; offset=3; strand=D; shift=6; score=0.575025; ------CCCCCCmytw- ; cor=; Ncor= a 0 0 0 0 0 0 71.0 1.0 4.0 2.0 6.0 10.0 406.0 44.0 240.0 333.0 0 c 0 0 0 0 0 0 790.0 997.0 995.0 997.0 989.0 977.0 357.0 550.0 171.0 173.0 0 g 0 0 0 0 0 0 137.0 0.0 0.0 0.0 0.0 3.0 110.0 70.0 211.0 152.0 0 t 0 0 0 0 0 0 0.0 0.0 0.0 0.0 4.0 8.0 125.0 334.0 377.0 339.0 0
MA1627.1_shift5 (Wt1)				; oligos_6nt_mkv3_m2 versus MA1627.1 (Wt1); m=19/20; ncol2=14; w=11; offset=2; strand=D; shift=5; score=0.499726; -----cycCTCCCCCAC ; cor=; Ncor= a 0 0 0 0 0 876.0 667.0 839.0 48.0 120.0 21.0 40.0 43.0 850.0 31.0 3294.0 158.0 c 0 0 0 0 0 1881.0 1630.0 2948.0 4546.0 69.0 4602.0 4354.0 4252.0 3636.0 4573.0 53.0 3749.0 g 0 0 0 0 0 794.0 1161.0 404.0 58.0 319.0 42.0 75.0 120.0 101.0 46.0 990.0 436.0 t 0 0 0 0 0 1140.0 1233.0 500.0 39.0 4183.0 26.0 222.0 276.0 104.0 41.0 354.0 348.0
MA1630.1_rc_shift1 (Znf281_rc)				; oligos_6nt_mkv3_m2 versus MA1630.1_rc (Znf281_rc); m=20/20; ncol2=11; w=9; offset=-2; strand=R; shift=1; score=0.475418; -CcTCCCCCAcc----- ; cor=; Ncor= a 0 315.0 1103.0 11.0 52.0 29.0 23.0 24.0 12.0 6298.0 745.0 954.0 0 0 0 0 0 c 0 5523.0 4312.0 8.0 6457.0 6402.0 6378.0 6356.0 6449.0 29.0 3751.0 3539.0 0 0 0 0 0 g 0 356.0 418.0 45.0 41.0 115.0 131.0 163.0 88.0 233.0 1076.0 878.0 0 0 0 0 0 t 0 374.0 735.0 6504.0 18.0 22.0 36.0 25.0 19.0 8.0 996.0 1197.0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
positions_6nt_m5_shift7 (positions_6nt_m5)				; positions_6nt_m5; m=0 (reference); ncol1=11; shift=7; ncol=18; -------waACAAAGgam ; Alignment reference a 0 0 0 0 0 0 0 295 332 1009 3 971 932 943 25 174 304 327 c 0 0 0 0 0 0 0 132 233 7 969 13 43 15 13 158 252 272 g 0 0 0 0 0 0 0 217 220 5 16 14 26 6 950 625 230 221 t 0 0 0 0 0 0 0 387 246 10 43 33 30 67 43 74 245 211
MA0867.2_shift7 (SOX4)				; positions_6nt_m5 versus MA0867.2 (SOX4); m=1/18; ncol2=10; w=10; offset=0; strand=D; shift=7; score=0.855367; -------gaACAAwGrv- ; cor=; Ncor= a 0 0 0 0 0 0 0 3190.0 5582.0 5582.0 0.0 5582.0 5582.0 5582.0 1018.0 2093.0 1775.0 0 c 0 0 0 0 0 0 0 1771.0 951.0 0.0 5582.0 1.0 6.0 120.0 64.0 1422.0 1438.0 0 g 0 0 0 0 0 0 0 5582.0 2047.0 0.0 37.0 6.0 11.0 50.0 5582.0 3489.0 1889.0 0 t 0 0 0 0 0 0 0 2286.0 431.0 9.0 33.0 0.0 0.0 2719.0 83.0 174.0 480.0 0
MA0442.2_shift6 (SOX10)				; positions_6nt_m5 versus MA0442.2 (SOX10); m=2/18; ncol2=11; w=10; offset=-1; strand=D; shift=6; score=0.809048; ------rraACAAAGvm- ; cor=; Ncor= a 0 0 0 0 0 0 683.0 723.0 1118.0 2023.0 3.0 2029.0 1968.0 1959.0 10.0 666.0 638.0 0 c 0 0 0 0 0 0 397.0 283.0 372.0 4.0 1989.0 7.0 28.0 23.0 13.0 552.0 555.0 0 g 0 0 0 0 0 0 527.0 571.0 317.0 3.0 11.0 7.0 20.0 12.0 2012.0 619.0 505.0 0 t 0 0 0 0 0 0 448.0 478.0 248.0 25.0 52.0 12.0 39.0 61.0 20.0 218.0 357.0 0
MA0143.4_shift7 (SOX2)				; positions_6nt_m5 versus MA0143.4 (SOX2); m=3/18; ncol2=11; w=11; offset=0; strand=D; shift=7; score=0.806603; -------wwACAATGgww ; cor=; Ncor= a 0 0 0 0 0 0 0 29105.0 30279.0 83515.0 1307.0 81587.0 80825.0 4815.0 9926.0 14772.0 28860.0 28960.0 c 0 0 0 0 0 0 0 11041.0 15154.0 436.0 78356.0 1205.0 1742.0 732.0 800.0 6264.0 17158.0 17475.0 g 0 0 0 0 0 0 0 21434.0 17157.0 418.0 1243.0 550.0 2002.0 930.0 73372.0 54414.0 17765.0 15998.0 t 0 0 0 0 0 0 0 24174.0 23164.0 1385.0 4848.0 2412.0 1185.0 79277.0 1656.0 10304.0 21971.0 23321.0
MA1120.1_shift7 (SOX13)				; positions_6nt_m5 versus MA1120.1 (SOX13); m=4/18; ncol2=11; w=11; offset=0; strand=D; shift=7; score=0.795842; -------raACAATGgmw ; cor=; Ncor= a 0 0 0 0 0 0 0 1539.0 1795.0 4451.0 55.0 4329.0 4390.0 156.0 585.0 778.0 1228.0 1228.0 c 0 0 0 0 0 0 0 663.0 958.0 22.0 4276.0 55.0 48.0 77.0 57.0 647.0 1257.0 1126.0 g 0 0 0 0 0 0 0 1395.0 1049.0 40.0 60.0 50.0 63.0 28.0 3837.0 2666.0 1074.0 1046.0 t 0 0 0 0 0 0 0 955.0 750.0 39.0 161.0 118.0 51.0 4291.0 73.0 461.0 993.0 1152.0
MA0514.1_rc_shift6 (Sox3_rc)				; positions_6nt_m5 versus MA0514.1_rc (Sox3_rc); m=5/18; ncol2=10; w=9; offset=-1; strand=R; shift=6; score=0.70454; ------rrrACAAAGG-- ; cor=; Ncor= a 0 0 0 0 0 0 989.0 1173.0 1115.0 2067.0 0.0 2067.0 2067.0 1805.0 515.0 250.0 0 0 c 0 0 0 0 0 0 382.0 22.0 254.0 0.0 1923.0 0.0 0.0 0.0 0.0 330.0 0 0 g 0 0 0 0 0 0 654.0 853.0 698.0 0.0 144.0 0.0 0.0 0.0 1552.0 1487.0 0 0 t 0 0 0 0 0 0 42.0 19.0 0.0 0.0 0.0 0.0 0.0 262.0 0.0 0.0 0 0
MA1603.1_shift6 (Dmrt1)				; positions_6nt_m5 versus MA1603.1 (Dmrt1); m=6/18; ncol2=13; w=11; offset=-1; strand=D; shift=6; score=0.674378; ------gwtACAAWGTaw ; cor=; Ncor= a 0 0 0 0 0 0 2593.0 7473.0 3915.0 17933.0 211.0 17489.0 15568.0 12433.0 727.0 547.0 10367.0 5909.0 c 0 0 0 0 0 0 1113.0 4222.0 1228.0 69.0 17633.0 110.0 482.0 205.0 185.0 161.0 1233.0 1333.0 g 0 0 0 0 0 0 12329.0 1246.0 918.0 82.0 139.0 104.0 456.0 322.0 17032.0 200.0 2521.0 4132.0 t 0 0 0 0 0 0 2260.0 5354.0 12234.0 211.0 312.0 592.0 1789.0 5335.0 351.0 17387.0 4174.0 6921.0
MA0515.1_rc_shift6 (Sox6_rc)				; positions_6nt_m5 versus MA0515.1_rc (Sox6_rc); m=7/18; ncol2=10; w=9; offset=-1; strand=R; shift=6; score=0.647712; ------rrrACAAwGg-- ; cor=; Ncor= a 0 0 0 0 0 0 128.0 133.0 129.0 249.0 0.0 249.0 249.0 88.0 28.0 56.0 0 0 c 0 0 0 0 0 0 31.0 0.0 5.0 0.0 249.0 0.0 0.0 0.0 0.0 50.0 0 0 g 0 0 0 0 0 0 76.0 112.0 115.0 0.0 0.0 0.0 0.0 0.0 221.0 139.0 0 0 t 0 0 0 0 0 0 14.0 4.0 0.0 0.0 0.0 0.0 0.0 161.0 0.0 4.0 0 0
MA1152.1_rc_shift6 (SOX15_rc)				; positions_6nt_m5 versus MA1152.1_rc (SOX15_rc); m=8/18; ncol2=10; w=9; offset=-1; strand=R; shift=6; score=0.626166; ------araACAAwrr-- ; cor=; Ncor= a 0 0 0 0 0 0 407.0 418.0 506.0 971.0 5.0 994.0 988.0 362.0 501.0 267.0 0 0 c 0 0 0 0 0 0 165.0 114.0 125.0 3.0 890.0 2.0 6.0 5.0 26.0 147.0 0 0 g 0 0 0 0 0 0 188.0 253.0 188.0 2.0 21.0 2.0 3.0 3.0 412.0 554.0 0 0 t 0 0 0 0 0 0 241.0 215.0 180.0 24.0 83.0 3.0 3.0 631.0 62.0 32.0 0 0
MA0769.2_rc_shift6 (TCF7_rc)				; positions_6nt_m5 versus MA0769.2_rc (TCF7_rc); m=9/18; ncol2=11; w=10; offset=-1; strand=R; shift=6; score=0.60771; ------aswTCAAAGrm- ; cor=; Ncor= a 0 0 0 0 0 0 7070.0 1982.0 8498.0 239.0 478.0 14489.0 14178.0 14556.0 157.0 4082.0 4335.0 0 c 0 0 0 0 0 0 1688.0 5325.0 1220.0 115.0 13972.0 83.0 266.0 67.0 206.0 3198.0 3981.0 0 g 0 0 0 0 0 0 2740.0 4774.0 855.0 63.0 278.0 62.0 248.0 125.0 14379.0 4604.0 3657.0 0 t 0 0 0 0 0 0 3496.0 2913.0 4421.0 14577.0 266.0 360.0 302.0 246.0 252.0 3110.0 3021.0 0
MA0078.1_rc_shift8 (Sox17_rc)				; positions_6nt_m5 versus MA0078.1_rc (Sox17_rc); m=10/18; ncol2=9; w=9; offset=1; strand=R; shift=8; score=0.585843; --------sACAATrdr- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 4.0 29.0 0.0 31.0 30.0 1.0 9.0 11.0 9.0 0 c 0 0 0 0 0 0 0 0 10.0 2.0 31.0 0.0 0.0 0.0 1.0 4.0 6.0 0 g 0 0 0 0 0 0 0 0 17.0 0.0 0.0 0.0 1.0 0.0 18.0 8.0 9.0 0 t 0 0 0 0 0 0 0 0 0.0 0.0 0.0 0.0 0.0 30.0 3.0 8.0 7.0 0
MA0077.1_rc_shift7 (SOX9_rc)				; positions_6nt_m5 versus MA0077.1_rc (SOX9_rc); m=11/18; ncol2=9; w=9; offset=0; strand=R; shift=7; score=0.584339; -------rAACAATrG-- ; cor=; Ncor= a 0 0 0 0 0 0 0 24.0 54.0 59.0 0.0 65.0 71.0 4.0 24.0 9.0 0 0 c 0 0 0 0 0 0 0 7.0 6.0 4.0 72.0 4.0 2.0 0.0 6.0 9.0 0 0 g 0 0 0 0 0 0 0 31.0 7.0 0.0 2.0 0.0 1.0 1.0 38.0 55.0 0 0 t 0 0 0 0 0 0 0 14.0 9.0 13.0 2.0 7.0 2.0 71.0 8.0 3.0 0 0
MA0868.2_shift6 (SOX8)				; positions_6nt_m5 versus MA0868.2 (SOX8); m=12/18; ncol2=10; w=9; offset=-1; strand=D; shift=6; score=0.564306; ------agAACAATrg-- ; cor=; Ncor= a 0 0 0 0 0 0 1827.0 740.0 1827.0 1827.0 3.0 1827.0 1827.0 273.0 1356.0 300.0 0 0 c 0 0 0 0 0 0 1124.0 414.0 151.0 0.0 1827.0 0.0 43.0 36.0 208.0 421.0 0 0 g 0 0 0 0 0 0 854.0 1827.0 263.0 0.0 35.0 0.0 0.0 20.0 1827.0 912.0 0 0 t 0 0 0 0 0 0 724.0 571.0 222.0 45.0 70.0 16.0 36.0 1827.0 287.0 193.0 0 0
MA0523.1_shift4 (TCF7L2)				; positions_6nt_m5 versus MA0523.1 (TCF7L2); m=13/18; ncol2=14; w=11; offset=-3; strand=D; shift=4; score=0.552001; ----rrAswTCAAAGgva ; cor=; Ncor= a 0 0 0 0 1525.0 1808.0 3070.0 85.0 2795.0 138.0 155.0 4188.0 4103.0 4169.0 303.0 1035.0 1398.0 1782.0 c 0 0 0 0 756.0 840.0 136.0 1947.0 26.0 0.0 3304.0 0.0 15.0 0.0 37.0 849.0 1123.0 826.0 g 0 0 0 0 1140.0 1153.0 559.0 2008.0 0.0 0.0 729.0 0.0 70.0 19.0 3848.0 2008.0 1210.0 757.0 t 0 0 0 0 767.0 387.0 423.0 148.0 1367.0 4050.0 0.0 0.0 0.0 0.0 0.0 296.0 457.0 823.0
MA1563.1_shift8 (SOX18)				; positions_6nt_m5 versus MA1563.1 (SOX18); m=14/18; ncol2=8; w=8; offset=1; strand=D; shift=8; score=0.520403; --------vACaAyGs-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 153.0 589.0 0.0 589.0 589.0 0.0 188.0 116.0 0 0 c 0 0 0 0 0 0 0 0 216.0 33.0 589.0 139.0 104.0 374.0 0.0 287.0 0 0 g 0 0 0 0 0 0 0 0 168.0 140.0 0.0 216.0 67.0 0.0 589.0 190.0 0 0 t 0 0 0 0 0 0 0 0 52.0 94.0 0.0 27.0 14.0 589.0 0.0 0.0 0 0
MA1421.1_shift4 (TCF7L1)				; positions_6nt_m5 versus MA1421.1 (TCF7L1); m=15/18; ncol2=12; w=9; offset=-3; strand=D; shift=4; score=0.460051; ----AAAGATCAAAGG-- ; cor=; Ncor= a 0 0 0 0 109.0 159.0 159.0 0.0 159.0 0.0 5.0 159.0 159.0 159.0 0.0 28.0 0 0 c 0 0 0 0 20.0 7.0 0.0 33.0 9.0 6.0 159.0 2.0 0.0 0.0 9.0 9.0 0 0 g 0 0 0 0 6.0 30.0 0.0 126.0 13.0 9.0 0.0 1.0 0.0 2.0 159.0 113.0 0 0 t 0 0 0 0 24.0 7.0 5.0 6.0 18.0 159.0 0.0 0.0 0.0 0.0 5.0 9.0 0 0
MA0084.1_shift5 (SRY)				; positions_6nt_m5 versus MA0084.1 (SRY); m=16/18; ncol2=9; w=7; offset=-2; strand=D; shift=5; score=0.448424; -----kwwaACAAw---- ; cor=; Ncor= a 0 0 0 0 0 5.0 8.0 15.0 18.0 25.0 0.0 28.0 27.0 7.0 0 0 0 0 c 0 0 0 0 0 5.0 3.0 0.0 3.0 0.0 26.0 0.0 0.0 0.0 0 0 0 0 g 0 0 0 0 0 10.0 4.0 3.0 3.0 0.0 0.0 0.0 1.0 2.0 0 0 0 0 t 0 0 0 0 0 8.0 13.0 10.0 4.0 3.0 2.0 0.0 0.0 19.0 0 0 0 0
MA0087.1_rc_shift7 (Sox5_rc)				; positions_6nt_m5 versus MA0087.1_rc (Sox5_rc); m=17/18; ncol2=7; w=7; offset=0; strand=R; shift=7; score=0.448344; -------wAACAAT---- ; cor=; Ncor= a 0 0 0 0 0 0 0 8.0 21.0 22.0 0.0 23.0 22.0 0.0 0 0 0 0 c 0 0 0 0 0 0 0 4.0 0.0 0.0 22.0 0.0 1.0 0.0 0 0 0 0 g 0 0 0 0 0 0 0 3.0 1.0 1.0 0.0 0.0 0.0 0.0 0 0 0 0 t 0 0 0 0 0 0 0 8.0 1.0 0.0 1.0 0.0 0.0 23.0 0 0 0 0
MA0851.1_shift0 (Foxj3)				; positions_6nt_m5 versus MA0851.1 (Foxj3); m=18/18; ncol2=17; w=10; offset=-7; strand=D; shift=0; score= 0.4005; hraarRTAAACAAwsmc- ; cor=; Ncor= a 27.0 34.0 48.0 51.0 35.0 30.0 1.0 91.0 96.0 99.0 0.0 99.0 79.0 57.0 22.0 27.0 24.0 0 c 26.0 13.0 19.0 13.0 13.0 1.0 2.0 8.0 2.0 0.0 81.0 0.0 7.0 9.0 34.0 27.0 39.0 0 g 21.0 31.0 16.0 17.0 33.0 68.0 0.0 0.0 0.0 0.0 0.0 0.0 6.0 7.0 26.0 24.0 17.0 0 t 26.0 22.0 17.0 19.0 20.0 0.0 97.0 0.0 3.0 1.0 18.0 1.0 9.0 27.0 18.0 22.0 19.0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv4_m4_shift3 (oligos_7nt_mkv4_m4)				; oligos_7nt_mkv4_m4; m=0 (reference); ncol1=15; shift=3; ncol=18; ---ttTGCATrACAAwrg ; Alignment reference a 0 0 0 94 150 122 79 51 653 22 182 633 28 641 643 222 203 170 c 0 0 0 81 150 40 44 610 10 2 63 18 548 18 15 39 75 148 g 0 0 0 59 84 30 528 14 11 10 379 6 60 7 17 34 328 283 t 0 0 0 451 301 493 34 10 11 651 61 28 49 19 10 390 79 84
MA0142.1_rc_shift2 (Pou5f1::Sox2_rc)				; oligos_7nt_mkv4_m4 versus MA0142.1_rc (Pou5f1::Sox2_rc); m=1/21; ncol2=15; w=14; offset=-1; strand=R; shift=2; score=0.829371; --aTtTGCATrwsAAwr- ; cor=; Ncor= a 0 0 837.0 53.0 92.0 269.0 196.0 104.0 1332.0 80.0 612.0 907.0 63.0 1231.0 1270.0 701.0 389.0 0 c 0 0 207.0 75.0 315.0 30.0 129.0 1239.0 15.0 24.0 186.0 29.0 825.0 79.0 36.0 28.0 66.0 0 g 0 0 119.0 33.0 68.0 16.0 1029.0 16.0 5.0 30.0 365.0 18.0 363.0 12.0 50.0 58.0 846.0 0 t 0 0 198.0 1200.0 887.0 1050.0 14.0 10.0 17.0 1235.0 206.0 415.0 118.0 47.0 11.0 579.0 63.0 0
MA1152.1_rc_shift8 (SOX15_rc)				; oligos_7nt_mkv4_m4 versus MA1152.1_rc (SOX15_rc); m=2/21; ncol2=10; w=10; offset=5; strand=R; shift=8; score=0.536734; --------araACAAwrr ; cor=; Ncor= a 0 0 0 0 0 0 0 0 407.0 418.0 506.0 971.0 5.0 994.0 988.0 362.0 501.0 267.0 c 0 0 0 0 0 0 0 0 165.0 114.0 125.0 3.0 890.0 2.0 6.0 5.0 26.0 147.0 g 0 0 0 0 0 0 0 0 188.0 253.0 188.0 2.0 21.0 2.0 3.0 3.0 412.0 554.0 t 0 0 0 0 0 0 0 0 241.0 215.0 180.0 24.0 83.0 3.0 3.0 631.0 62.0 32.0
MA0515.1_rc_shift8 (Sox6_rc)				; oligos_7nt_mkv4_m4 versus MA0515.1_rc (Sox6_rc); m=3/21; ncol2=10; w=10; offset=5; strand=R; shift=8; score=0.510672; --------rrrACAAwGg ; cor=; Ncor= a 0 0 0 0 0 0 0 0 128.0 133.0 129.0 249.0 0.0 249.0 249.0 88.0 28.0 56.0 c 0 0 0 0 0 0 0 0 31.0 0.0 5.0 0.0 249.0 0.0 0.0 0.0 0.0 50.0 g 0 0 0 0 0 0 0 0 76.0 112.0 115.0 0.0 0.0 0.0 0.0 0.0 221.0 139.0 t 0 0 0 0 0 0 0 0 14.0 4.0 0.0 0.0 0.0 0.0 0.0 161.0 0.0 4.0
MA0868.2_shift8 (SOX8)				; oligos_7nt_mkv4_m4 versus MA0868.2 (SOX8); m=4/21; ncol2=10; w=10; offset=5; strand=D; shift=8; score=0.50504; --------agAACAATrg ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1827.0 740.0 1827.0 1827.0 3.0 1827.0 1827.0 273.0 1356.0 300.0 c 0 0 0 0 0 0 0 0 1124.0 414.0 151.0 0.0 1827.0 0.0 43.0 36.0 208.0 421.0 g 0 0 0 0 0 0 0 0 854.0 1827.0 263.0 0.0 35.0 0.0 0.0 20.0 1827.0 912.0 t 0 0 0 0 0 0 0 0 724.0 571.0 222.0 45.0 70.0 16.0 36.0 1827.0 287.0 193.0
MA0078.1_rc_shift10 (Sox17_rc)				; oligos_7nt_mkv4_m4 versus MA0078.1_rc (Sox17_rc); m=5/21; ncol2=9; w=8; offset=7; strand=R; shift=10; score=0.471455; ----------sACAATrd ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 4.0 29.0 0.0 31.0 30.0 1.0 9.0 11.0 c 0 0 0 0 0 0 0 0 0 0 10.0 2.0 31.0 0.0 0.0 0.0 1.0 4.0 g 0 0 0 0 0 0 0 0 0 0 17.0 0.0 0.0 0.0 1.0 0.0 18.0 8.0 t 0 0 0 0 0 0 0 0 0 0 0.0 0.0 0.0 0.0 0.0 30.0 3.0 8.0
MA0514.1_rc_shift8 (Sox3_rc)				; oligos_7nt_mkv4_m4 versus MA0514.1_rc (Sox3_rc); m=6/21; ncol2=10; w=10; offset=5; strand=R; shift=8; score=0.468838; --------rrrACAAAGG ; cor=; Ncor= a 0 0 0 0 0 0 0 0 989.0 1173.0 1115.0 2067.0 0.0 2067.0 2067.0 1805.0 515.0 250.0 c 0 0 0 0 0 0 0 0 382.0 22.0 254.0 0.0 1923.0 0.0 0.0 0.0 0.0 330.0 g 0 0 0 0 0 0 0 0 654.0 853.0 698.0 0.0 144.0 0.0 0.0 0.0 1552.0 1487.0 t 0 0 0 0 0 0 0 0 42.0 19.0 0.0 0.0 0.0 0.0 0.0 262.0 0.0 0.0
MA1115.1_rc_shift1 (POU5F1_rc)				; oligos_7nt_mkv4_m4 versus MA1115.1_rc (POU5F1_rc); m=7/21; ncol2=11; w=9; offset=-2; strand=R; shift=1; score=0.464036; -haTTTGCATww------ ; cor=; Ncor= a 0 3637.0 6383.0 307.0 838.0 1108.0 1723.0 634.0 12834.0 70.0 4818.0 4846.0 0 0 0 0 0 0 c 0 3551.0 2071.0 257.0 1026.0 118.0 548.0 11571.0 67.0 229.0 1908.0 1996.0 0 0 0 0 0 0 g 0 2450.0 2104.0 270.0 690.0 132.0 10310.0 192.0 130.0 122.0 2785.0 1290.0 0 0 0 0 0 0 t 0 3476.0 2556.0 12280.0 10560.0 11756.0 533.0 717.0 83.0 12693.0 3603.0 4982.0 0 0 0 0 0 0
MA0025.2_rc_shift1 (NFIL3_rc)				; oligos_7nt_mkv4_m4 versus MA0025.2_rc (NFIL3_rc); m=8/21; ncol2=13; w=11; offset=-2; strand=R; shift=1; score=0.455925; -wtaTTrCATAAyw---- ; cor=; Ncor= a 0 6893.0 5543.0 13143.0 474.0 434.0 9180.0 610.0 20334.0 433.0 20606.0 20927.0 2798.0 7109.0 0 0 0 0 c 0 4482.0 4152.0 2701.0 360.0 171.0 454.0 20459.0 492.0 990.0 1714.0 518.0 7261.0 5615.0 0 0 0 0 g 0 4929.0 5630.0 4959.0 251.0 543.0 12004.0 467.0 1511.0 220.0 208.0 681.0 3896.0 3904.0 0 0 0 0 t 0 6692.0 7671.0 2193.0 21911.0 21848.0 1358.0 1460.0 659.0 21353.0 468.0 870.0 9041.0 6368.0 0 0 0 0
MA0077.1_rc_shift9 (SOX9_rc)				; oligos_7nt_mkv4_m4 versus MA0077.1_rc (SOX9_rc); m=9/21; ncol2=9; w=9; offset=6; strand=R; shift=9; score=0.455899; ---------rAACAATrG ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 24.0 54.0 59.0 0.0 65.0 71.0 4.0 24.0 9.0 c 0 0 0 0 0 0 0 0 0 7.0 6.0 4.0 72.0 4.0 2.0 0.0 6.0 9.0 g 0 0 0 0 0 0 0 0 0 31.0 7.0 0.0 2.0 0.0 1.0 1.0 38.0 55.0 t 0 0 0 0 0 0 0 0 0 14.0 9.0 13.0 2.0 7.0 2.0 71.0 8.0 3.0
MA0867.2_shift9 (SOX4)				; oligos_7nt_mkv4_m4 versus MA0867.2 (SOX4); m=10/21; ncol2=10; w=9; offset=6; strand=D; shift=9; score=0.451638; ---------gaACAAwGr ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 3190.0 5582.0 5582.0 0.0 5582.0 5582.0 5582.0 1018.0 2093.0 c 0 0 0 0 0 0 0 0 0 1771.0 951.0 0.0 5582.0 1.0 6.0 120.0 64.0 1422.0 g 0 0 0 0 0 0 0 0 0 5582.0 2047.0 0.0 37.0 6.0 11.0 50.0 5582.0 3489.0 t 0 0 0 0 0 0 0 0 0 2286.0 431.0 9.0 33.0 0.0 0.0 2719.0 83.0 174.0
MA0785.1_rc_shift1 (POU2F1_rc)				; oligos_7nt_mkv4_m4 versus MA0785.1_rc (POU2F1_rc); m=11/21; ncol2=12; w=10; offset=-2; strand=R; shift=1; score=0.443616; -aATTwgCATAwt----- ; cor=; Ncor= a 0 4262.0 10582.0 158.0 787.0 3651.0 3375.0 1326.0 10582.0 43.0 10582.0 5231.0 2075.0 0 0 0 0 0 c 0 2504.0 755.0 51.0 879.0 46.0 1351.0 10582.0 213.0 29.0 474.0 2142.0 1494.0 0 0 0 0 0 g 0 1840.0 457.0 37.0 108.0 33.0 10582.0 82.0 501.0 12.0 1347.0 1046.0 1938.0 0 0 0 0 0 t 0 1976.0 1422.0 10582.0 10582.0 6932.0 300.0 186.0 153.0 10582.0 756.0 5351.0 5076.0 0 0 0 0 0
MA0792.1_rc_shift2 (POU5F1B_rc)				; oligos_7nt_mkv4_m4 versus MA0792.1_rc (POU5F1B_rc); m=12/21; ncol2=9; w=8; offset=-1; strand=R; shift=2; score=0.442936; --ATTwrCATA------- ; cor=; Ncor= a 0 0 9519.0 203.0 896.0 3220.0 3828.0 1790.0 9519.0 84.0 9519.0 0 0 0 0 0 0 0 c 0 0 750.0 97.0 856.0 65.0 1293.0 9519.0 206.0 67.0 808.0 0 0 0 0 0 0 0 g 0 0 537.0 65.0 144.0 51.0 9519.0 94.0 364.0 21.0 1778.0 0 0 0 0 0 0 0 t 0 0 1559.0 9519.0 9519.0 6299.0 398.0 322.0 171.0 9519.0 1326.0 0 0 0 0 0 0 0
MA0143.4_shift9 (SOX2)				; oligos_7nt_mkv4_m4 versus MA0143.4 (SOX2); m=13/21; ncol2=11; w=9; offset=6; strand=D; shift=9; score=0.438138; ---------wwACAATGg ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 29105.0 30279.0 83515.0 1307.0 81587.0 80825.0 4815.0 9926.0 14772.0 c 0 0 0 0 0 0 0 0 0 11041.0 15154.0 436.0 78356.0 1205.0 1742.0 732.0 800.0 6264.0 g 0 0 0 0 0 0 0 0 0 21434.0 17157.0 418.0 1243.0 550.0 2002.0 930.0 73372.0 54414.0 t 0 0 0 0 0 0 0 0 0 24174.0 23164.0 1385.0 4848.0 2412.0 1185.0 79277.0 1656.0 10304.0
MA1563.1_shift10 (SOX18)				; oligos_7nt_mkv4_m4 versus MA1563.1 (SOX18); m=14/21; ncol2=8; w=8; offset=7; strand=D; shift=10; score=0.437957; ----------vACaAyGs ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 153.0 589.0 0.0 589.0 589.0 0.0 188.0 116.0 c 0 0 0 0 0 0 0 0 0 0 216.0 33.0 589.0 139.0 104.0 374.0 0.0 287.0 g 0 0 0 0 0 0 0 0 0 0 168.0 140.0 0.0 216.0 67.0 0.0 589.0 190.0 t 0 0 0 0 0 0 0 0 0 0 52.0 94.0 0.0 27.0 14.0 589.0 0.0 0.0
MA1120.1_shift9 (SOX13)				; oligos_7nt_mkv4_m4 versus MA1120.1 (SOX13); m=15/21; ncol2=11; w=9; offset=6; strand=D; shift=9; score=0.432771; ---------raACAATGg ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 1539.0 1795.0 4451.0 55.0 4329.0 4390.0 156.0 585.0 778.0 c 0 0 0 0 0 0 0 0 0 663.0 958.0 22.0 4276.0 55.0 48.0 77.0 57.0 647.0 g 0 0 0 0 0 0 0 0 0 1395.0 1049.0 40.0 60.0 50.0 63.0 28.0 3837.0 2666.0 t 0 0 0 0 0 0 0 0 0 955.0 750.0 39.0 161.0 118.0 51.0 4291.0 73.0 461.0
MA0789.1_rc_shift2 (POU3F4_rc)				; oligos_7nt_mkv4_m4 versus MA0789.1_rc (POU3F4_rc); m=16/21; ncol2=9; w=8; offset=-1; strand=R; shift=2; score=0.432253; --ATTwGCATA------- ; cor=; Ncor= a 0 0 11117.0 168.0 885.0 4670.0 2565.0 245.0 11117.0 26.0 11117.0 0 0 0 0 0 0 0 c 0 0 292.0 88.0 315.0 56.0 602.0 11117.0 24.0 68.0 136.0 0 0 0 0 0 0 0 g 0 0 247.0 47.0 332.0 10.0 11117.0 19.0 59.0 23.0 349.0 0 0 0 0 0 0 0 t 0 0 705.0 11117.0 11117.0 6447.0 136.0 53.0 59.0 11117.0 941.0 0 0 0 0 0 0 0
MA0627.2_rc_shift0 (POU2F3_rc)				; oligos_7nt_mkv4_m4 versus MA0627.2_rc (POU2F3_rc); m=17/21; ncol2=13; w=10; offset=-3; strand=R; shift=0; score=0.425045; wwATTTGCATatw----- ; cor=; Ncor= a 17245.0 15909.0 43338.0 330.0 3276.0 896.0 3716.0 2827.0 53366.0 931.0 37593.0 13775.0 16525.0 0 0 0 0 0 c 7941.0 13237.0 4098.0 233.0 804.0 138.0 1079.0 51971.0 1251.0 354.0 3029.0 8770.0 10722.0 0 0 0 0 0 g 11936.0 10595.0 3478.0 164.0 567.0 80.0 50288.0 251.0 322.0 194.0 6885.0 6824.0 11383.0 0 0 0 0 0 t 18907.0 16288.0 5115.0 55302.0 51382.0 54915.0 946.0 980.0 1090.0 54550.0 8522.0 26660.0 17399.0 0 0 0 0 0
MA0084.1_shift7 (SRY)				; oligos_7nt_mkv4_m4 versus MA0084.1 (SRY); m=18/21; ncol2=9; w=9; offset=4; strand=D; shift=7; score=0.420649; -------kwwaACAAw-- ; cor=; Ncor= a 0 0 0 0 0 0 0 5.0 8.0 15.0 18.0 25.0 0.0 28.0 27.0 7.0 0 0 c 0 0 0 0 0 0 0 5.0 3.0 0.0 3.0 0.0 26.0 0.0 0.0 0.0 0 0 g 0 0 0 0 0 0 0 10.0 4.0 3.0 3.0 0.0 0.0 0.0 1.0 2.0 0 0 t 0 0 0 0 0 0 0 8.0 13.0 10.0 4.0 3.0 2.0 0.0 0.0 19.0 0 0
MA0786.1_rc_shift0 (POU3F1_rc)				; oligos_7nt_mkv4_m4 versus MA0786.1_rc (POU3F1_rc); m=19/21; ncol2=12; w=9; offset=-3; strand=R; shift=0; score=0.417405; wmATTwrCATAw------ ; cor=; Ncor= a 961.0 1167.0 2471.0 63.0 284.0 1048.0 1119.0 232.0 2471.0 21.0 2471.0 1437.0 0 0 0 0 0 0 c 452.0 620.0 128.0 25.0 130.0 21.0 413.0 2471.0 21.0 26.0 128.0 322.0 0 0 0 0 0 0 g 478.0 302.0 95.0 20.0 103.0 1.0 2471.0 13.0 53.0 7.0 186.0 126.0 0 0 0 0 0 0 t 1510.0 382.0 259.0 2471.0 2471.0 1423.0 170.0 37.0 44.0 2471.0 505.0 1034.0 0 0 0 0 0 0
MA0788.1_rc_shift0 (POU3F3_rc)				; oligos_7nt_mkv4_m4 versus MA0788.1_rc (POU3F3_rc); m=20/21; ncol2=13; w=10; offset=-3; strand=R; shift=0; score=0.41052; waATTwGCATAww----- ; cor=; Ncor= a 542.0 1078.0 1078.0 14.0 79.0 572.0 343.0 86.0 1078.0 30.0 1078.0 637.0 290.0 0 0 0 0 0 c 115.0 237.0 12.0 15.0 77.0 1.0 118.0 1078.0 49.0 12.0 64.0 131.0 137.0 0 0 0 0 0 g 85.0 141.0 20.0 6.0 11.0 4.0 1078.0 10.0 33.0 11.0 57.0 41.0 75.0 0 0 0 0 0 t 536.0 240.0 53.0 1078.0 1078.0 506.0 28.0 22.0 25.0 1078.0 129.0 440.0 576.0 0 0 0 0 0
MA0787.1_rc_shift0 (POU3F2_rc)				; oligos_7nt_mkv4_m4 versus MA0787.1_rc (POU3F2_rc); m=21/21; ncol2=12; w=9; offset=-3; strand=R; shift=0; score=0.405371; tmATTwGCATAw------ ; cor=; Ncor= a 562.0 840.0 1292.0 13.0 45.0 604.0 372.0 60.0 1292.0 0.0 1292.0 700.0 0 0 0 0 0 0 c 261.0 452.0 28.0 0.0 32.0 1.0 153.0 1292.0 12.0 25.0 40.0 171.0 0 0 0 0 0 0 g 262.0 165.0 19.0 6.0 16.0 4.0 1292.0 9.0 30.0 16.0 65.0 61.0 0 0 0 0 0 0 t 1292.0 137.0 63.0 1292.0 1292.0 688.0 68.0 19.0 28.0 1292.0 163.0 591.0 0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv4_m1_shift3 (oligos_7nt_mkv4_m1)				; oligos_7nt_mkv4_m1; m=0 (reference); ncol1=16; shift=3; ncol=19; ---tswtATGCAaATghrt ; Alignment reference a 0 0 0 247 218 642 179 967 25 37 23 941 731 1022 62 214 318 394 259 c 0 0 0 137 343 70 163 24 11 10 931 11 90 17 70 129 278 203 271 g 0 0 0 237 332 102 84 41 14 991 37 55 79 35 63 594 204 295 235 t 0 0 0 472 200 279 667 61 1043 55 102 86 193 19 898 156 293 201 328
MA0507.1_rc_shift5 (POU2F2_rc)				; oligos_7nt_mkv4_m1 versus MA0507.1_rc (POU2F2_rc); m=1/11; ncol2=13; w=13; offset=2; strand=R; shift=5; score=0.79712; -----wyATGCAAATkmr- ; cor=; Ncor= a 0 0 0 0 0 1225.0 476.0 2285.0 0.0 16.0 132.0 2287.0 2029.0 2287.0 251.0 442.0 898.0 835.0 0 c 0 0 0 0 0 107.0 613.0 0.0 0.0 0.0 1997.0 0.0 0.0 0.0 1.0 415.0 593.0 402.0 0 g 0 0 0 0 0 361.0 39.0 2.0 30.0 2271.0 0.0 0.0 2.0 0.0 19.0 825.0 266.0 635.0 0 t 0 0 0 0 0 594.0 1159.0 0.0 2257.0 0.0 158.0 0.0 256.0 0.0 2016.0 605.0 530.0 415.0 0
MA0627.2_shift4 (POU2F3)				; oligos_7nt_mkv4_m1 versus MA0627.2 (POU2F3); m=2/11; ncol2=13; w=13; offset=1; strand=D; shift=4; score=0.786834; ----watATGCAAATww-- ; cor=; Ncor= a 0 0 0 0 17399.0 26660.0 8522.0 54550.0 1090.0 980.0 946.0 54915.0 51382.0 55302.0 5115.0 16288.0 18907.0 0 0 c 0 0 0 0 11383.0 6824.0 6885.0 194.0 322.0 251.0 50288.0 80.0 567.0 164.0 3478.0 10595.0 11936.0 0 0 g 0 0 0 0 10722.0 8770.0 3029.0 354.0 1251.0 51971.0 1079.0 138.0 804.0 233.0 4098.0 13237.0 7941.0 0 0 t 0 0 0 0 16525.0 13775.0 37593.0 931.0 53366.0 2827.0 3716.0 896.0 3276.0 330.0 43338.0 15909.0 17245.0 0 0
MA0784.1_shift4 (POU1F1)				; oligos_7nt_mkv4_m1 versus MA0784.1 (POU1F1); m=3/11; ncol2=14; w=14; offset=1; strand=D; shift=4; score=0.774752; ----awTATGCwAATkAg- ; cor=; Ncor= a 0 0 0 0 1211.0 1128.0 276.0 2128.0 45.0 28.0 98.0 1267.0 2128.0 2128.0 76.0 222.0 2128.0 736.0 0 c 0 0 0 0 247.0 123.0 83.0 14.0 74.0 11.0 2128.0 12.0 11.0 10.0 37.0 241.0 174.0 479.0 0 g 0 0 0 0 273.0 187.0 108.0 32.0 26.0 2128.0 164.0 7.0 82.0 0.0 40.0 840.0 194.0 2128.0 0 t 0 0 0 0 397.0 1000.0 2128.0 19.0 2128.0 176.0 536.0 861.0 85.0 3.0 2128.0 1287.0 273.0 547.0 0
MA0788.1_shift4 (POU3F3)				; oligos_7nt_mkv4_m1 versus MA0788.1 (POU3F3); m=4/11; ncol2=13; w=13; offset=1; strand=D; shift=4; score=0.698953; ----wwTATGCwAATtw-- ; cor=; Ncor= a 0 0 0 0 576.0 440.0 129.0 1078.0 25.0 22.0 28.0 506.0 1078.0 1078.0 53.0 240.0 536.0 0 0 c 0 0 0 0 75.0 41.0 57.0 11.0 33.0 10.0 1078.0 4.0 11.0 6.0 20.0 141.0 85.0 0 0 g 0 0 0 0 137.0 131.0 64.0 12.0 49.0 1078.0 118.0 1.0 77.0 15.0 12.0 237.0 115.0 0 0 t 0 0 0 0 290.0 637.0 1078.0 30.0 1078.0 86.0 343.0 572.0 79.0 14.0 1078.0 1078.0 542.0 0 0
MA0785.1_shift4 (POU2F1)				; oligos_7nt_mkv4_m1 versus MA0785.1 (POU2F1); m=5/11; ncol2=12; w=12; offset=1; strand=D; shift=4; score=0.697067; ----awTATGcwAATt--- ; cor=; Ncor= a 0 0 0 0 5076.0 5351.0 756.0 10582.0 153.0 186.0 300.0 6932.0 10582.0 10582.0 1422.0 1976.0 0 0 0 c 0 0 0 0 1938.0 1046.0 1347.0 12.0 501.0 82.0 10582.0 33.0 108.0 37.0 457.0 1840.0 0 0 0 g 0 0 0 0 1494.0 2142.0 474.0 29.0 213.0 10582.0 1351.0 46.0 879.0 51.0 755.0 2504.0 0 0 0 t 0 0 0 0 2075.0 5231.0 10582.0 43.0 10582.0 1326.0 3375.0 3651.0 787.0 158.0 10582.0 4262.0 0 0 0
MA0786.1_shift5 (POU3F1)				; oligos_7nt_mkv4_m1 versus MA0786.1 (POU3F1); m=6/11; ncol2=12; w=12; offset=2; strand=D; shift=5; score=0.689448; -----wTATGywAATkw-- ; cor=; Ncor= a 0 0 0 0 0 1034.0 505.0 2471.0 44.0 37.0 170.0 1423.0 2471.0 2471.0 259.0 382.0 1510.0 0 0 c 0 0 0 0 0 126.0 186.0 7.0 53.0 13.0 2471.0 1.0 103.0 20.0 95.0 302.0 478.0 0 0 g 0 0 0 0 0 322.0 128.0 26.0 21.0 2471.0 413.0 21.0 130.0 25.0 128.0 620.0 452.0 0 0 t 0 0 0 0 0 1437.0 2471.0 21.0 2471.0 232.0 1119.0 1048.0 284.0 63.0 2471.0 1167.0 961.0 0 0
MA0787.1_shift5 (POU3F2)				; oligos_7nt_mkv4_m1 versus MA0787.1 (POU3F2); m=7/11; ncol2=12; w=12; offset=2; strand=D; shift=5; score=0.68315; -----wTATGCwAATka-- ; cor=; Ncor= a 0 0 0 0 0 591.0 163.0 1292.0 28.0 19.0 68.0 688.0 1292.0 1292.0 63.0 137.0 1292.0 0 0 c 0 0 0 0 0 61.0 65.0 16.0 30.0 9.0 1292.0 4.0 16.0 6.0 19.0 165.0 262.0 0 0 g 0 0 0 0 0 171.0 40.0 25.0 12.0 1292.0 153.0 1.0 32.0 0.0 28.0 452.0 261.0 0 0 t 0 0 0 0 0 700.0 1292.0 0.0 1292.0 60.0 372.0 604.0 45.0 13.0 1292.0 840.0 562.0 0 0
MA1115.1_shift5 (POU5F1)				; oligos_7nt_mkv4_m1 versus MA1115.1 (POU5F1); m=8/11; ncol2=11; w=11; offset=2; strand=D; shift=5; score=0.652709; -----wwATGCAAAtd--- ; cor=; Ncor= a 0 0 0 0 0 4982.0 3603.0 12693.0 83.0 717.0 533.0 11756.0 10560.0 12280.0 2556.0 3476.0 0 0 0 c 0 0 0 0 0 1290.0 2785.0 122.0 130.0 192.0 10310.0 132.0 690.0 270.0 2104.0 2450.0 0 0 0 g 0 0 0 0 0 1996.0 1908.0 229.0 67.0 11571.0 548.0 118.0 1026.0 257.0 2071.0 3551.0 0 0 0 t 0 0 0 0 0 4846.0 4818.0 70.0 12834.0 634.0 1723.0 1108.0 838.0 307.0 6383.0 3637.0 0 0 0
MA0142.1_shift0 (Pou5f1::Sox2)				; oligos_7nt_mkv4_m1 versus MA0142.1 (Pou5f1::Sox2); m=9/11; ncol2=15; w=12; offset=-3; strand=D; shift=0; score=0.57187; ywTTswyATGCAaAt---- ; cor=; Ncor= a 63.0 579.0 11.0 47.0 118.0 415.0 206.0 1235.0 17.0 10.0 14.0 1050.0 887.0 1200.0 198.0 0 0 0 0 c 846.0 58.0 50.0 12.0 363.0 18.0 365.0 30.0 5.0 16.0 1029.0 16.0 68.0 33.0 119.0 0 0 0 0 g 66.0 28.0 36.0 79.0 825.0 29.0 186.0 24.0 15.0 1239.0 129.0 30.0 315.0 75.0 207.0 0 0 0 0 t 389.0 701.0 1270.0 1231.0 63.0 907.0 612.0 80.0 1332.0 104.0 196.0 269.0 92.0 53.0 837.0 0 0 0 0
MA0792.1_shift6 (POU5F1B)				; oligos_7nt_mkv4_m1 versus MA0792.1 (POU5F1B); m=10/11; ncol2=9; w=9; offset=3; strand=D; shift=6; score=0.543224; ------TATGywAAT---- ; cor=; Ncor= a 0 0 0 0 0 0 1326.0 9519.0 171.0 322.0 398.0 6299.0 9519.0 9519.0 1559.0 0 0 0 0 c 0 0 0 0 0 0 1778.0 21.0 364.0 94.0 9519.0 51.0 144.0 65.0 537.0 0 0 0 0 g 0 0 0 0 0 0 808.0 67.0 206.0 9519.0 1293.0 65.0 856.0 97.0 750.0 0 0 0 0 t 0 0 0 0 0 0 9519.0 84.0 9519.0 1790.0 3828.0 3220.0 896.0 203.0 9519.0 0 0 0 0
MA0789.1_shift6 (POU3F4)				; oligos_7nt_mkv4_m1 versus MA0789.1 (POU3F4); m=11/11; ncol2=9; w=9; offset=3; strand=D; shift=6; score=0.540224; ------TATGCwAAT---- ; cor=; Ncor= a 0 0 0 0 0 0 941.0 11117.0 59.0 53.0 136.0 6447.0 11117.0 11117.0 705.0 0 0 0 0 c 0 0 0 0 0 0 349.0 23.0 59.0 19.0 11117.0 10.0 332.0 47.0 247.0 0 0 0 0 g 0 0 0 0 0 0 136.0 68.0 24.0 11117.0 602.0 56.0 315.0 88.0 292.0 0 0 0 0 t 0 0 0 0 0 0 11117.0 26.0 11117.0 245.0 2565.0 4670.0 885.0 168.0 11117.0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv3_m4_shift4 (oligos_6nt_mkv3_m4)				; oligos_6nt_mkv3_m4; m=0 (reference); ncol1=11; shift=4; ncol=15; ----atTTACATAws ; Alignment reference a 0 0 0 0 460 228 61 32 921 63 1109 80 1031 380 286 c 0 0 0 0 212 227 61 41 41 1038 34 77 47 227 324 g 0 0 0 0 267 182 29 23 187 29 15 56 43 199 301 t 0 0 0 0 257 559 1045 1100 47 66 38 983 75 390 285
MA0785.1_rc_shift3 (POU2F1_rc)				; oligos_6nt_mkv3_m4 versus MA0785.1_rc (POU2F1_rc); m=1/34; ncol2=12; w=11; offset=-1; strand=R; shift=3; score=0.755464; ---aATTwgCATAwt ; cor=; Ncor= a 0 0 0 4262.0 10582.0 158.0 787.0 3651.0 3375.0 1326.0 10582.0 43.0 10582.0 5231.0 2075.0 c 0 0 0 2504.0 755.0 51.0 879.0 46.0 1351.0 10582.0 213.0 29.0 474.0 2142.0 1494.0 g 0 0 0 1840.0 457.0 37.0 108.0 33.0 10582.0 82.0 501.0 12.0 1347.0 1046.0 1938.0 t 0 0 0 1976.0 1422.0 10582.0 10582.0 6932.0 300.0 186.0 153.0 10582.0 756.0 5351.0 5076.0
MA0025.2_rc_shift3 (NFIL3_rc)				; oligos_6nt_mkv3_m4 versus MA0025.2_rc (NFIL3_rc); m=2/34; ncol2=13; w=11; offset=-1; strand=R; shift=3; score=0.730332; ---wtaTTrCATAAy ; cor=; Ncor= a 0 0 0 6893.0 5543.0 13143.0 474.0 434.0 9180.0 610.0 20334.0 433.0 20606.0 20927.0 2798.0 c 0 0 0 4482.0 4152.0 2701.0 360.0 171.0 454.0 20459.0 492.0 990.0 1714.0 518.0 7261.0 g 0 0 0 4929.0 5630.0 4959.0 251.0 543.0 12004.0 467.0 1511.0 220.0 208.0 681.0 3896.0 t 0 0 0 6692.0 7671.0 2193.0 21911.0 21848.0 1358.0 1460.0 659.0 21353.0 468.0 870.0 9041.0
MA0843.1_shift4 (TEF)				; oligos_6nt_mkv3_m4 versus MA0843.1 (TEF); m=3/34; ncol2=12; w=11; offset=0; strand=D; shift=4; score=0.715671; ----yrTTACrTAAy ; cor=; Ncor= a 0 0 0 0 541.0 1971.0 90.0 107.0 3601.0 17.0 1324.0 0.0 3601.0 3601.0 0.0 c 0 0 0 0 1053.0 372.0 18.0 0.0 0.0 3601.0 0.0 133.0 76.0 0.0 2120.0 g 0 0 0 0 853.0 1630.0 5.0 31.0 108.0 0.0 2277.0 43.0 11.0 19.0 269.0 t 0 0 0 0 1154.0 8.0 3601.0 3601.0 0.0 446.0 0.0 3601.0 161.0 10.0 1481.0
MA0639.1_shift4 (DBP)				; oligos_6nt_mkv3_m4 versus MA0639.1 (DBP); m=4/34; ncol2=12; w=11; offset=0; strand=D; shift=4; score=0.697828; ----krTTAYRTAAy ; cor=; Ncor= a 0 0 0 0 1552.0 3706.0 5.0 4.0 7100.0 2.0 3180.0 3.0 7100.0 7100.0 158.0 c 0 0 0 0 1714.0 1130.0 4.0 6.0 0.0 7100.0 17.0 541.0 288.0 1.0 3707.0 g 0 0 0 0 1903.0 3393.0 2.0 602.0 498.0 21.0 7100.0 7.0 7.0 2.0 1543.0 t 0 0 0 0 1930.0 93.0 7100.0 7100.0 4.0 2664.0 1.0 7100.0 6.0 2.0 3393.0
MA0627.2_rc_shift2 (POU2F3_rc)				; oligos_6nt_mkv3_m4 versus MA0627.2_rc (POU2F3_rc); m=5/34; ncol2=13; w=11; offset=-2; strand=R; shift=2; score= 0.6907; --wwATTTGCATatw ; cor=; Ncor= a 0 0 17245.0 15909.0 43338.0 330.0 3276.0 896.0 3716.0 2827.0 53366.0 931.0 37593.0 13775.0 16525.0 c 0 0 7941.0 13237.0 4098.0 233.0 804.0 138.0 1079.0 51971.0 1251.0 354.0 3029.0 8770.0 10722.0 g 0 0 11936.0 10595.0 3478.0 164.0 567.0 80.0 50288.0 251.0 322.0 194.0 6885.0 6824.0 11383.0 t 0 0 18907.0 16288.0 5115.0 55302.0 51382.0 54915.0 946.0 980.0 1090.0 54550.0 8522.0 26660.0 17399.0
MA0792.1_rc_shift4 (POU5F1B_rc)				; oligos_6nt_mkv3_m4 versus MA0792.1_rc (POU5F1B_rc); m=6/34; ncol2=9; w=9; offset=0; strand=R; shift=4; score=0.683103; ----ATTwrCATA-- ; cor=; Ncor= a 0 0 0 0 9519.0 203.0 896.0 3220.0 3828.0 1790.0 9519.0 84.0 9519.0 0 0 c 0 0 0 0 750.0 97.0 856.0 65.0 1293.0 9519.0 206.0 67.0 808.0 0 0 g 0 0 0 0 537.0 65.0 144.0 51.0 9519.0 94.0 364.0 21.0 1778.0 0 0 t 0 0 0 0 1559.0 9519.0 9519.0 6299.0 398.0 322.0 171.0 9519.0 1326.0 0 0
MA1115.1_rc_shift3 (POU5F1_rc)				; oligos_6nt_mkv3_m4 versus MA1115.1_rc (POU5F1_rc); m=7/34; ncol2=11; w=10; offset=-1; strand=R; shift=3; score=0.672704; ---haTTTGCATww- ; cor=; Ncor= a 0 0 0 3637.0 6383.0 307.0 838.0 1108.0 1723.0 634.0 12834.0 70.0 4818.0 4846.0 0 c 0 0 0 3551.0 2071.0 257.0 1026.0 118.0 548.0 11571.0 67.0 229.0 1908.0 1996.0 0 g 0 0 0 2450.0 2104.0 270.0 690.0 132.0 10310.0 192.0 130.0 122.0 2785.0 1290.0 0 t 0 0 0 3476.0 2556.0 12280.0 10560.0 11756.0 533.0 717.0 83.0 12693.0 3603.0 4982.0 0
MA0789.1_rc_shift4 (POU3F4_rc)				; oligos_6nt_mkv3_m4 versus MA0789.1_rc (POU3F4_rc); m=8/34; ncol2=9; w=9; offset=0; strand=R; shift=4; score=0.663355; ----ATTwGCATA-- ; cor=; Ncor= a 0 0 0 0 11117.0 168.0 885.0 4670.0 2565.0 245.0 11117.0 26.0 11117.0 0 0 c 0 0 0 0 292.0 88.0 315.0 56.0 602.0 11117.0 24.0 68.0 136.0 0 0 g 0 0 0 0 247.0 47.0 332.0 10.0 11117.0 19.0 59.0 23.0 349.0 0 0 t 0 0 0 0 705.0 11117.0 11117.0 6447.0 136.0 53.0 59.0 11117.0 941.0 0 0
MA1607.1_rc_shift1 (Foxl2_rc)				; oligos_6nt_mkv3_m4 versus MA1607.1_rc (Foxl2_rc); m=9/34; ncol2=14; w=11; offset=-3; strand=R; shift=1; score=0.653163; -ywTGTTTACAtwwy ; cor=; Ncor= a 0 4100.0 4782.0 1270.0 1970.0 328.0 366.0 204.0 16284.0 479.0 12849.0 2785.0 8493.0 5755.0 4214.0 c 0 4529.0 3844.0 401.0 151.0 411.0 187.0 112.0 419.0 14648.0 1371.0 2107.0 1599.0 3521.0 4621.0 g 0 4329.0 4246.0 807.0 15698.0 216.0 336.0 558.0 301.0 367.0 896.0 2051.0 1576.0 2912.0 3031.0 t 0 5143.0 5229.0 15623.0 282.0 17146.0 17212.0 17227.0 1097.0 2607.0 2985.0 11158.0 6433.0 5913.0 6235.0
MA0788.1_rc_shift2 (POU3F3_rc)				; oligos_6nt_mkv3_m4 versus MA0788.1_rc (POU3F3_rc); m=10/34; ncol2=13; w=11; offset=-2; strand=R; shift=2; score=0.652146; --waATTwGCATAww ; cor=; Ncor= a 0 0 542.0 1078.0 1078.0 14.0 79.0 572.0 343.0 86.0 1078.0 30.0 1078.0 637.0 290.0 c 0 0 115.0 237.0 12.0 15.0 77.0 1.0 118.0 1078.0 49.0 12.0 64.0 131.0 137.0 g 0 0 85.0 141.0 20.0 6.0 11.0 4.0 1078.0 10.0 33.0 11.0 57.0 41.0 75.0 t 0 0 536.0 240.0 53.0 1078.0 1078.0 506.0 28.0 22.0 25.0 1078.0 129.0 440.0 576.0
MA0847.2_rc_shift2 (FOXD2_rc)				; oligos_6nt_mkv3_m4 versus MA0847.2_rc (FOXD2_rc); m=11/34; ncol2=13; w=11; offset=-2; strand=R; shift=2; score=0.649893; --wTRTTTAYwTwrs ; cor=; Ncor= a 0 0 2076.0 209.0 2297.0 33.0 11.0 11.0 5995.0 6.0 1553.0 23.0 3812.0 3589.0 442.0 c 0 0 515.0 125.0 0.0 25.0 17.0 11.0 0.0 5995.0 752.0 1294.0 3.0 309.0 2314.0 g 0 0 1003.0 53.0 5995.0 0.0 209.0 658.0 1005.0 101.0 1208.0 92.0 36.0 2406.0 1834.0 t 0 0 2400.0 5995.0 0.0 5995.0 5995.0 5995.0 148.0 2608.0 2482.0 5995.0 2183.0 865.0 1404.0
MA0043.3_rc_shift3 (HLF_rc)				; oligos_6nt_mkv3_m4 versus MA0043.3_rc (HLF_rc); m=12/34; ncol2=14; w=11; offset=-1; strand=R; shift=3; score=0.648231; ---wkrTTRCATAAy ; cor=; Ncor= a 0 0 0 6732.0 5897.0 6488.0 113.0 98.0 6653.0 189.0 22426.0 209.0 23271.0 23739.0 1410.0 c 0 0 0 5523.0 3218.0 3300.0 189.0 48.0 199.0 21705.0 253.0 1344.0 895.0 148.0 9793.0 g 0 0 0 5267.0 6412.0 13237.0 67.0 122.0 17203.0 112.0 1548.0 125.0 96.0 242.0 4432.0 t 0 0 0 6902.0 8897.0 1399.0 24055.0 24156.0 369.0 2418.0 197.0 22746.0 162.0 295.0 8789.0
MA0786.1_rc_shift2 (POU3F1_rc)				; oligos_6nt_mkv3_m4 versus MA0786.1_rc (POU3F1_rc); m=13/34; ncol2=12; w=10; offset=-2; strand=R; shift=2; score=0.635189; --wmATTwrCATAw- ; cor=; Ncor= a 0 0 961.0 1167.0 2471.0 63.0 284.0 1048.0 1119.0 232.0 2471.0 21.0 2471.0 1437.0 0 c 0 0 452.0 620.0 128.0 25.0 130.0 21.0 413.0 2471.0 21.0 26.0 128.0 322.0 0 g 0 0 478.0 302.0 95.0 20.0 103.0 1.0 2471.0 13.0 53.0 7.0 186.0 126.0 0 t 0 0 1510.0 382.0 259.0 2471.0 2471.0 1423.0 170.0 37.0 44.0 2471.0 505.0 1034.0 0
MA0784.1_rc_shift1 (POU1F1_rc)				; oligos_6nt_mkv3_m4 versus MA0784.1_rc (POU1F1_rc); m=14/34; ncol2=14; w=11; offset=-3; strand=R; shift=1; score=0.62186; -cTmATTwGCATAwt ; cor=; Ncor= a 0 547.0 273.0 1287.0 2128.0 3.0 85.0 861.0 536.0 176.0 2128.0 19.0 2128.0 1000.0 397.0 c 0 2128.0 194.0 840.0 40.0 0.0 82.0 7.0 164.0 2128.0 26.0 32.0 108.0 187.0 273.0 g 0 479.0 174.0 241.0 37.0 10.0 11.0 12.0 2128.0 11.0 74.0 14.0 83.0 123.0 247.0 t 0 736.0 2128.0 222.0 76.0 2128.0 2128.0 1267.0 98.0 28.0 45.0 2128.0 276.0 1128.0 1211.0
MA0787.1_rc_shift2 (POU3F2_rc)				; oligos_6nt_mkv3_m4 versus MA0787.1_rc (POU3F2_rc); m=15/34; ncol2=12; w=10; offset=-2; strand=R; shift=2; score=0.617632; --tmATTwGCATAw- ; cor=; Ncor= a 0 0 562.0 840.0 1292.0 13.0 45.0 604.0 372.0 60.0 1292.0 0.0 1292.0 700.0 0 c 0 0 261.0 452.0 28.0 0.0 32.0 1.0 153.0 1292.0 12.0 25.0 40.0 171.0 0 g 0 0 262.0 165.0 19.0 6.0 16.0 4.0 1292.0 9.0 30.0 16.0 65.0 61.0 0 t 0 0 1292.0 137.0 63.0 1292.0 1292.0 688.0 68.0 19.0 28.0 1292.0 163.0 591.0 0
MA0845.1_rc_shift2 (FOXB1_rc)				; oligos_6nt_mkv3_m4 versus MA0845.1_rc (FOXB1_rc); m=16/34; ncol2=11; w=9; offset=-2; strand=R; shift=2; score=0.603075; --aTrTTKACwTw-- ; cor=; Ncor= a 0 0 4008.0 147.0 4589.0 216.0 381.0 73.0 6841.0 124.0 4858.0 561.0 4448.0 0 0 c 0 0 556.0 157.0 104.0 47.0 0.0 75.0 113.0 6841.0 409.0 1498.0 190.0 0 0 g 0 0 573.0 0.0 2252.0 47.0 213.0 1950.0 240.0 54.0 218.0 263.0 272.0 0 0 t 0 0 1704.0 6841.0 28.0 6841.0 6841.0 4891.0 180.0 1159.0 1983.0 5343.0 2393.0 0 0
MA0032.2_rc_shift2 (FOXC1_rc)				; oligos_6nt_mkv3_m4 versus MA0032.2_rc (FOXC1_rc); m=17/34; ncol2=11; w=9; offset=-2; strand=R; shift=2; score=0.572848; --wTrTTKAYwTw-- ; cor=; Ncor= a 0 0 11787.0 184.0 9708.0 112.0 57.0 45.0 18489.0 51.0 10596.0 1386.0 12038.0 0 0 c 0 0 1107.0 433.0 165.0 141.0 0.0 21.0 390.0 13631.0 2422.0 4165.0 304.0 0 0 g 0 0 1558.0 27.0 8782.0 56.0 108.0 5372.0 1652.0 336.0 2008.0 728.0 772.0 0 0 t 0 0 6702.0 18489.0 122.0 18489.0 18489.0 13117.0 2496.0 4858.0 7893.0 14324.0 6452.0 0 0
MA0507.1_shift1 (POU2F2)				; oligos_6nt_mkv3_m4 versus MA0507.1 (POU2F2); m=18/34; ncol2=13; w=10; offset=-3; strand=D; shift=1; score=0.56635; -ykmATTTGCATrw- ; cor=; Ncor= a 0 415.0 530.0 605.0 2016.0 0.0 256.0 0.0 158.0 0.0 2257.0 0.0 1159.0 594.0 0 c 0 635.0 266.0 825.0 19.0 0.0 2.0 0.0 0.0 2271.0 30.0 2.0 39.0 361.0 0 g 0 402.0 593.0 415.0 1.0 0.0 0.0 0.0 1997.0 0.0 0.0 0.0 613.0 107.0 0 t 0 835.0 898.0 442.0 251.0 2287.0 2029.0 2287.0 132.0 16.0 0.0 2285.0 476.0 1225.0 0
MA0142.1_rc_shift4 (Pou5f1::Sox2_rc)				; oligos_6nt_mkv3_m4 versus MA0142.1_rc (Pou5f1::Sox2_rc); m=19/34; ncol2=15; w=11; offset=0; strand=R; shift=4; score=0.563336; ----aTtTGCATrws ; cor=; Ncor= a 0 0 0 0 837.0 53.0 92.0 269.0 196.0 104.0 1332.0 80.0 612.0 907.0 63.0 c 0 0 0 0 207.0 75.0 315.0 30.0 129.0 1239.0 15.0 24.0 186.0 29.0 825.0 g 0 0 0 0 119.0 33.0 68.0 16.0 1029.0 16.0 5.0 30.0 365.0 18.0 363.0 t 0 0 0 0 198.0 1200.0 887.0 1050.0 14.0 10.0 17.0 1235.0 206.0 415.0 118.0
MA0846.1_rc_shift1 (FOXC2_rc)				; oligos_6nt_mkv3_m4 versus MA0846.1_rc (FOXC2_rc); m=20/34; ncol2=12; w=9; offset=-3; strand=R; shift=1; score=0.491498; -wwTRTTTAywTw-- ; cor=; Ncor= a 0 9461.0 7160.0 215.0 6021.0 242.0 107.0 122.0 20456.0 136.0 9155.0 2080.0 11517.0 0 0 c 0 2649.0 1710.0 328.0 68.0 279.0 81.0 87.0 321.0 14038.0 3129.0 5093.0 454.0 0 0 g 0 3080.0 2087.0 101.0 14435.0 105.0 344.0 6759.0 3773.0 440.0 3476.0 1652.0 1279.0 0 0 t 0 10995.0 13296.0 20456.0 31.0 20456.0 20456.0 20456.0 2005.0 6418.0 11301.0 20456.0 8939.0 0 0
MA0607.1_rc_shift8 (Bhlha15_rc)				; oligos_6nt_mkv3_m4 versus MA0607.1_rc (Bhlha15_rc); m=21/34; ncol2=8; w=7; offset=4; strand=R; shift=8; score=0.462462; --------aCATATG ; cor=; Ncor= a 0 0 0 0 0 0 0 0 614.0 0.0 999.0 0.0 799.0 0.0 0.0 c 0 0 0 0 0 0 0 0 154.0 999.0 0.0 0.0 200.0 0.0 0.0 g 0 0 0 0 0 0 0 0 231.0 0.0 0.0 200.0 0.0 0.0 999.0 t 0 0 0 0 0 0 0 0 1.0 0.0 0.0 799.0 0.0 999.0 0.0
MA0047.3_rc_shift1 (FOXA2_rc)				; oligos_6nt_mkv3_m4 versus MA0047.3_rc (FOXA2_rc); m=22/34; ncol2=11; w=8; offset=-3; strand=R; shift=1; score=0.459346; -wwTGTTTACwt--- ; cor=; Ncor= a 0 66478.0 84100.0 9418.0 59170.0 7805.0 10179.0 6283.0 254489.0 4144.0 117443.0 52026.0 0 0 0 c 0 56632.0 50527.0 2984.0 3603.0 2805.0 6484.0 2641.0 1890.0 236311.0 38538.0 63806.0 0 0 0 g 0 53633.0 50576.0 3086.0 196969.0 3329.0 22429.0 9424.0 2037.0 2928.0 12432.0 34080.0 0 0 0 t 0 85410.0 76950.0 246665.0 2411.0 248214.0 223061.0 243805.0 3737.0 18770.0 93740.0 112241.0 0 0 0
MA1683.1_rc_shift1 (FOXA3_rc)				; oligos_6nt_mkv3_m4 versus MA1683.1_rc (FOXA3_rc); m=23/34; ncol2=11; w=8; offset=-3; strand=R; shift=1; score=0.440475; -wwTGTTTACwy--- ; cor=; Ncor= a 0 13048.0 14069.0 1838.0 7272.0 984.0 978.0 1143.0 46586.0 2596.0 19321.0 9298.0 0 0 0 c 0 11103.0 11451.0 614.0 1205.0 934.0 977.0 636.0 690.0 40396.0 9296.0 12744.0 0 0 0 g 0 9884.0 9975.0 933.0 39509.0 973.0 3883.0 1980.0 903.0 1464.0 3627.0 8520.0 0 0 0 t 0 14902.0 13442.0 45552.0 951.0 46046.0 43099.0 45178.0 758.0 4481.0 16693.0 18375.0 0 0 0
MA0042.2_rc_shift3 (FOXI1_rc)				; oligos_6nt_mkv3_m4 versus MA0042.2_rc (FOXI1_rc); m=24/34; ncol2=7; w=6; offset=-1; strand=R; shift=3; score=0.435922; ---TGTTTAC----- ; cor=; Ncor= a 0 0 0 0.0 810.0 66.0 0.0 0.0 5175.0 0.0 0 0 0 0 0 c 0 0 0 25.0 48.0 29.0 0.0 37.0 35.0 5175.0 0 0 0 0 0 g 0 0 0 12.0 5175.0 23.0 23.0 540.0 60.0 39.0 0 0 0 0 0 t 0 0 0 5175.0 157.0 5175.0 5175.0 5175.0 74.0 618.0 0 0 0 0 0
MA0481.3_rc_shift1 (FOXP1_rc)				; oligos_6nt_mkv3_m4 versus MA0481.3_rc (FOXP1_rc); m=25/34; ncol2=11; w=8; offset=-3; strand=R; shift=1; score=0.43286; -wwTGTTTACwt--- ; cor=; Ncor= a 0 21623.0 21427.0 3609.0 10795.0 2069.0 2585.0 1947.0 71862.0 3111.0 27494.0 17193.0 0 0 0 c 0 12809.0 15846.0 749.0 1493.0 1132.0 1830.0 1073.0 920.0 59571.0 14136.0 16635.0 0 0 0 g 0 14312.0 17235.0 1904.0 61094.0 1487.0 5067.0 2095.0 727.0 1573.0 6209.0 13908.0 0 0 0 t 0 25974.0 20210.0 68456.0 1336.0 70030.0 65236.0 69603.0 1209.0 10463.0 26879.0 26982.0 0 0 0
MA1103.2_rc_shift1 (FOXK2_rc)				; oligos_6nt_mkv3_m4 versus MA1103.2_rc (FOXK2_rc); m=26/34; ncol2=11; w=8; offset=-3; strand=R; shift=1; score=0.431878; -ytTGTTTACwt--- ; cor=; Ncor= a 0 3024.0 4016.0 505.0 1472.0 365.0 565.0 341.0 15782.0 694.0 6197.0 3788.0 0 0 0 c 0 5012.0 3950.0 170.0 426.0 391.0 436.0 148.0 327.0 12737.0 3423.0 3471.0 0 0 0 g 0 3788.0 3877.0 295.0 14282.0 330.0 1291.0 277.0 210.0 551.0 2198.0 2872.0 0 0 0 t 0 4855.0 4836.0 15709.0 499.0 15593.0 14387.0 15913.0 360.0 2697.0 4861.0 6548.0 0 0 0
MA0850.1_rc_shift3 (FOXP3_rc)				; oligos_6nt_mkv3_m4 versus MA0850.1_rc (FOXP3_rc); m=27/34; ncol2=7; w=6; offset=-1; strand=R; shift=3; score=0.427139; ---TGTTTAy----- ; cor=; Ncor= a 0 0 0 0.0 39.0 0.0 8.0 31.0 211.0 0.0 0 0 0 0 0 c 0 0 0 18.0 32.0 49.0 9.0 0.0 0.0 137.0 0 0 0 0 0 g 0 0 0 0.0 211.0 15.0 0.0 0.0 52.0 0.0 0 0 0 0 0 t 0 0 0 211.0 0.0 211.0 211.0 211.0 20.0 74.0 0 0 0 0 0
MA1606.1_rc_shift1 (Foxf1_rc)				; oligos_6nt_mkv3_m4 versus MA1606.1_rc (Foxf1_rc); m=28/34; ncol2=11; w=8; offset=-3; strand=R; shift=1; score=0.418288; -ttTGTTTAywt--- ; cor=; Ncor= a 0 14658.0 13930.0 1916.0 4187.0 831.0 2538.0 903.0 57368.0 3653.0 26418.0 13166.0 0 0 0 c 0 12844.0 14294.0 443.0 522.0 1067.0 811.0 445.0 1158.0 33599.0 8287.0 12462.0 0 0 0 g 0 11715.0 12643.0 745.0 54394.0 475.0 2249.0 899.0 446.0 3754.0 7560.0 10753.0 0 0 0 t 0 20323.0 18673.0 56436.0 437.0 57167.0 53942.0 57293.0 568.0 18534.0 17275.0 23159.0 0 0 0
MA0593.1_rc_shift1 (FOXP2_rc)				; oligos_6nt_mkv3_m4 versus MA0593.1_rc (FOXP2_rc); m=29/34; ncol2=11; w=8; offset=-3; strand=R; shift=1; score=0.417694; -tyTGTTTACwt--- ; cor=; Ncor= a 0 126.0 22.0 0.0 9.0 0.0 0.0 0.0 707.0 0.0 277.0 133.0 0 0 0 c 0 184.0 293.0 0.0 0.0 0.0 0.0 0.0 0.0 606.0 142.0 190.0 0 0 0 g 0 124.0 154.0 0.0 757.0 0.0 0.0 0.0 0.0 0.0 7.0 113.0 0 0 0 t 0 332.0 297.0 766.0 0.0 766.0 766.0 766.0 59.0 160.0 340.0 330.0 0 0 0
MA0848.1_rc_shift3 (FOXO4_rc)				; oligos_6nt_mkv3_m4 versus MA0848.1_rc (FOXO4_rc); m=30/34; ncol2=7; w=6; offset=-1; strand=R; shift=3; score=0.416778; ---TGTTTAC----- ; cor=; Ncor= a 0 0 0 40.0 958.0 10.0 20.0 20.0 5378.0 0.0 0 0 0 0 0 c 0 0 0 10.0 33.0 90.0 19.0 32.0 123.0 5378.0 0 0 0 0 0 g 0 0 0 10.0 5378.0 0.0 146.0 1259.0 69.0 13.0 0 0 0 0 0 t 0 0 0 5378.0 58.0 5378.0 5378.0 5378.0 345.0 1669.0 0 0 0 0 0
MA0148.4_rc_shift0 (FOXA1_rc)				; oligos_6nt_mkv3_m4 versus MA0148.4_rc (FOXA1_rc); m=31/34; ncol2=12; w=8; offset=-4; strand=R; shift=0; score=0.41565; whATGTTTACwt--- ; cor=; Ncor= a 99726.0 85316.0 230183.0 6999.0 37659.0 3793.0 10719.0 5233.0 291718.0 11970.0 137954.0 70922.0 0 0 0 c 70936.0 94376.0 27283.0 3226.0 4805.0 3652.0 3774.0 5243.0 6092.0 281612.0 53682.0 64510.0 0 0 0 g 64037.0 60571.0 23038.0 3674.0 272943.0 2452.0 13410.0 14648.0 13932.0 5935.0 16071.0 53261.0 0 0 0 t 88104.0 82540.0 42299.0 308904.0 7396.0 312906.0 294900.0 297679.0 11061.0 23286.0 115096.0 134110.0 0 0 0
MA0849.1_rc_shift3 (FOXO6_rc)				; oligos_6nt_mkv3_m4 versus MA0849.1_rc (FOXO6_rc); m=32/34; ncol2=7; w=6; offset=-1; strand=R; shift=3; score=0.414193; ---TGTTTAC----- ; cor=; Ncor= a 0 0 0 0.0 385.0 0.0 26.0 0.0 7025.0 0.0 0 0 0 0 0 c 0 0 0 13.0 31.0 0.0 0.0 7.0 32.0 7025.0 0 0 0 0 0 g 0 0 0 0.0 7025.0 0.0 195.0 1147.0 0.0 0.0 0 0 0 0 0 t 0 0 0 7025.0 0.0 7025.0 7025.0 7025.0 154.0 1445.0 0 0 0 0 0
MA0033.2_rc_shift3 (FOXL1_rc)				; oligos_6nt_mkv3_m4 versus MA0033.2_rc (FOXL1_rc); m=33/34; ncol2=7; w=6; offset=-1; strand=R; shift=3; score=0.40833; ---TGTTTAy----- ; cor=; Ncor= a 0 0 0 17.0 1057.0 0.0 15.0 0.0 4780.0 140.0 0 0 0 0 0 c 0 0 0 0.0 0.0 50.0 0.0 57.0 0.0 2678.0 0 0 0 0 0 g 0 0 0 54.0 3723.0 82.0 38.0 628.0 416.0 13.0 0 0 0 0 0 t 0 0 0 4780.0 0.0 4780.0 4780.0 4780.0 10.0 2102.0 0 0 0 0 0
MA0031.1_rc_shift2 (FOXD1_rc)				; oligos_6nt_mkv3_m4 versus MA0031.1_rc (FOXD1_rc); m=34/34; ncol2=8; w=6; offset=-2; strand=R; shift=2; score=0.400389; --wTGTTTAC----- ; cor=; Ncor= a 0 0 8.0 0.0 1.0 0.0 0.0 0.0 20.0 1.0 0 0 0 0 0 c 0 0 3.0 0.0 0.0 1.0 0.0 0.0 0.0 17.0 0 0 0 0 0 g 0 0 2.0 0.0 18.0 1.0 0.0 1.0 0.0 1.0 0 0 0 0 0 t 0 0 7.0 20.0 1.0 18.0 20.0 19.0 0.0 1.0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv4_m2_shift0 (oligos_7nt_mkv4_m2)				; oligos_7nt_mkv4_m2; m=0 (reference); ncol1=20; shift=0; ncol=20; yyhcATTTGCATaAcAAwrg ; Alignment reference a 177 143 192 159 530 32 74 97 95 43 731 30 446 536 49 635 665 270 225 181 c 203 197 191 360 74 22 99 18 38 698 10 20 75 34 491 48 24 48 85 183 g 183 171 152 104 75 12 43 8 609 5 4 15 144 19 134 24 38 48 363 294 t 194 246 222 134 78 691 541 634 15 11 12 692 92 168 83 50 30 391 84 99
MA0142.1_rc_shift4 (Pou5f1::Sox2_rc)				; oligos_7nt_mkv4_m2 versus MA0142.1_rc (Pou5f1::Sox2_rc); m=1/13; ncol2=15; w=15; offset=4; strand=R; shift=4; score=0.739242; ----aTtTGCATrwsAAwr- ; cor=; Ncor= a 0 0 0 0 837.0 53.0 92.0 269.0 196.0 104.0 1332.0 80.0 612.0 907.0 63.0 1231.0 1270.0 701.0 389.0 0 c 0 0 0 0 207.0 75.0 315.0 30.0 129.0 1239.0 15.0 24.0 186.0 29.0 825.0 79.0 36.0 28.0 66.0 0 g 0 0 0 0 119.0 33.0 68.0 16.0 1029.0 16.0 5.0 30.0 365.0 18.0 363.0 12.0 50.0 58.0 846.0 0 t 0 0 0 0 198.0 1200.0 887.0 1050.0 14.0 10.0 17.0 1235.0 206.0 415.0 118.0 47.0 11.0 579.0 63.0 0
MA0507.1_shift1 (POU2F2)				; oligos_7nt_mkv4_m2 versus MA0507.1 (POU2F2); m=2/13; ncol2=13; w=13; offset=1; strand=D; shift=1; score=0.617062; -ykmATTTGCATrw------ ; cor=; Ncor= a 0 415.0 530.0 605.0 2016.0 0.0 256.0 0.0 158.0 0.0 2257.0 0.0 1159.0 594.0 0 0 0 0 0 0 c 0 635.0 266.0 825.0 19.0 0.0 2.0 0.0 0.0 2271.0 30.0 2.0 39.0 361.0 0 0 0 0 0 0 g 0 402.0 593.0 415.0 1.0 0.0 0.0 0.0 1997.0 0.0 0.0 0.0 613.0 107.0 0 0 0 0 0 0 t 0 835.0 898.0 442.0 251.0 2287.0 2029.0 2287.0 132.0 16.0 0.0 2285.0 476.0 1225.0 0 0 0 0 0 0
MA0784.1_rc_shift1 (POU1F1_rc)				; oligos_7nt_mkv4_m2 versus MA0784.1_rc (POU1F1_rc); m=3/13; ncol2=14; w=14; offset=1; strand=R; shift=1; score=0.598864; -cTmATTwGCATAwt----- ; cor=; Ncor= a 0 547.0 273.0 1287.0 2128.0 3.0 85.0 861.0 536.0 176.0 2128.0 19.0 2128.0 1000.0 397.0 0 0 0 0 0 c 0 2128.0 194.0 840.0 40.0 0.0 82.0 7.0 164.0 2128.0 26.0 32.0 108.0 187.0 273.0 0 0 0 0 0 g 0 479.0 174.0 241.0 37.0 10.0 11.0 12.0 2128.0 11.0 74.0 14.0 83.0 123.0 247.0 0 0 0 0 0 t 0 736.0 2128.0 222.0 76.0 2128.0 2128.0 1267.0 98.0 28.0 45.0 2128.0 276.0 1128.0 1211.0 0 0 0 0 0
MA0627.2_rc_shift2 (POU2F3_rc)				; oligos_7nt_mkv4_m2 versus MA0627.2_rc (POU2F3_rc); m=4/13; ncol2=13; w=13; offset=2; strand=R; shift=2; score=0.596426; --wwATTTGCATatw----- ; cor=; Ncor= a 0 0 17245.0 15909.0 43338.0 330.0 3276.0 896.0 3716.0 2827.0 53366.0 931.0 37593.0 13775.0 16525.0 0 0 0 0 0 c 0 0 7941.0 13237.0 4098.0 233.0 804.0 138.0 1079.0 51971.0 1251.0 354.0 3029.0 8770.0 10722.0 0 0 0 0 0 g 0 0 11936.0 10595.0 3478.0 164.0 567.0 80.0 50288.0 251.0 322.0 194.0 6885.0 6824.0 11383.0 0 0 0 0 0 t 0 0 18907.0 16288.0 5115.0 55302.0 51382.0 54915.0 946.0 980.0 1090.0 54550.0 8522.0 26660.0 17399.0 0 0 0 0 0
MA0786.1_rc_shift2 (POU3F1_rc)				; oligos_7nt_mkv4_m2 versus MA0786.1_rc (POU3F1_rc); m=5/13; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.56263; --wmATTwrCATAw------ ; cor=; Ncor= a 0 0 961.0 1167.0 2471.0 63.0 284.0 1048.0 1119.0 232.0 2471.0 21.0 2471.0 1437.0 0 0 0 0 0 0 c 0 0 452.0 620.0 128.0 25.0 130.0 21.0 413.0 2471.0 21.0 26.0 128.0 322.0 0 0 0 0 0 0 g 0 0 478.0 302.0 95.0 20.0 103.0 1.0 2471.0 13.0 53.0 7.0 186.0 126.0 0 0 0 0 0 0 t 0 0 1510.0 382.0 259.0 2471.0 2471.0 1423.0 170.0 37.0 44.0 2471.0 505.0 1034.0 0 0 0 0 0 0
MA0788.1_rc_shift2 (POU3F3_rc)				; oligos_7nt_mkv4_m2 versus MA0788.1_rc (POU3F3_rc); m=6/13; ncol2=13; w=13; offset=2; strand=R; shift=2; score=0.554058; --waATTwGCATAww----- ; cor=; Ncor= a 0 0 542.0 1078.0 1078.0 14.0 79.0 572.0 343.0 86.0 1078.0 30.0 1078.0 637.0 290.0 0 0 0 0 0 c 0 0 115.0 237.0 12.0 15.0 77.0 1.0 118.0 1078.0 49.0 12.0 64.0 131.0 137.0 0 0 0 0 0 g 0 0 85.0 141.0 20.0 6.0 11.0 4.0 1078.0 10.0 33.0 11.0 57.0 41.0 75.0 0 0 0 0 0 t 0 0 536.0 240.0 53.0 1078.0 1078.0 506.0 28.0 22.0 25.0 1078.0 129.0 440.0 576.0 0 0 0 0 0
MA0787.1_rc_shift2 (POU3F2_rc)				; oligos_7nt_mkv4_m2 versus MA0787.1_rc (POU3F2_rc); m=7/13; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.553028; --tmATTwGCATAw------ ; cor=; Ncor= a 0 0 562.0 840.0 1292.0 13.0 45.0 604.0 372.0 60.0 1292.0 0.0 1292.0 700.0 0 0 0 0 0 0 c 0 0 261.0 452.0 28.0 0.0 32.0 1.0 153.0 1292.0 12.0 25.0 40.0 171.0 0 0 0 0 0 0 g 0 0 262.0 165.0 19.0 6.0 16.0 4.0 1292.0 9.0 30.0 16.0 65.0 61.0 0 0 0 0 0 0 t 0 0 1292.0 137.0 63.0 1292.0 1292.0 688.0 68.0 19.0 28.0 1292.0 163.0 591.0 0 0 0 0 0 0
MA0785.1_rc_shift3 (POU2F1_rc)				; oligos_7nt_mkv4_m2 versus MA0785.1_rc (POU2F1_rc); m=8/13; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.542221; ---aATTwgCATAwt----- ; cor=; Ncor= a 0 0 0 4262.0 10582.0 158.0 787.0 3651.0 3375.0 1326.0 10582.0 43.0 10582.0 5231.0 2075.0 0 0 0 0 0 c 0 0 0 2504.0 755.0 51.0 879.0 46.0 1351.0 10582.0 213.0 29.0 474.0 2142.0 1494.0 0 0 0 0 0 g 0 0 0 1840.0 457.0 37.0 108.0 33.0 10582.0 82.0 501.0 12.0 1347.0 1046.0 1938.0 0 0 0 0 0 t 0 0 0 1976.0 1422.0 10582.0 10582.0 6932.0 300.0 186.0 153.0 10582.0 756.0 5351.0 5076.0 0 0 0 0 0
MA1115.1_rc_shift3 (POU5F1_rc)				; oligos_7nt_mkv4_m2 versus MA1115.1_rc (POU5F1_rc); m=9/13; ncol2=11; w=11; offset=3; strand=R; shift=3; score=0.526103; ---haTTTGCATww------ ; cor=; Ncor= a 0 0 0 3637.0 6383.0 307.0 838.0 1108.0 1723.0 634.0 12834.0 70.0 4818.0 4846.0 0 0 0 0 0 0 c 0 0 0 3551.0 2071.0 257.0 1026.0 118.0 548.0 11571.0 67.0 229.0 1908.0 1996.0 0 0 0 0 0 0 g 0 0 0 2450.0 2104.0 270.0 690.0 132.0 10310.0 192.0 130.0 122.0 2785.0 1290.0 0 0 0 0 0 0 t 0 0 0 3476.0 2556.0 12280.0 10560.0 11756.0 533.0 717.0 83.0 12693.0 3603.0 4982.0 0 0 0 0 0 0
MA0043.3_rc_shift3 (HLF_rc)				; oligos_7nt_mkv4_m2 versus MA0043.3_rc (HLF_rc); m=10/13; ncol2=14; w=14; offset=3; strand=R; shift=3; score=0.512222; ---wkrTTRCATAAyhw--- ; cor=; Ncor= a 0 0 0 6732.0 5897.0 6488.0 113.0 98.0 6653.0 189.0 22426.0 209.0 23271.0 23739.0 1410.0 7927.0 6925.0 0 0 0 c 0 0 0 5523.0 3218.0 3300.0 189.0 48.0 199.0 21705.0 253.0 1344.0 895.0 148.0 9793.0 6297.0 5626.0 0 0 0 g 0 0 0 5267.0 6412.0 13237.0 67.0 122.0 17203.0 112.0 1548.0 125.0 96.0 242.0 4432.0 4009.0 5063.0 0 0 0 t 0 0 0 6902.0 8897.0 1399.0 24055.0 24156.0 369.0 2418.0 197.0 22746.0 162.0 295.0 8789.0 6191.0 6810.0 0 0 0
MA0025.2_rc_shift3 (NFIL3_rc)				; oligos_7nt_mkv4_m2 versus MA0025.2_rc (NFIL3_rc); m=11/13; ncol2=13; w=13; offset=3; strand=R; shift=3; score=0.486003; ---wtaTTrCATAAyw---- ; cor=; Ncor= a 0 0 0 6893.0 5543.0 13143.0 474.0 434.0 9180.0 610.0 20334.0 433.0 20606.0 20927.0 2798.0 7109.0 0 0 0 0 c 0 0 0 4482.0 4152.0 2701.0 360.0 171.0 454.0 20459.0 492.0 990.0 1714.0 518.0 7261.0 5615.0 0 0 0 0 g 0 0 0 4929.0 5630.0 4959.0 251.0 543.0 12004.0 467.0 1511.0 220.0 208.0 681.0 3896.0 3904.0 0 0 0 0 t 0 0 0 6692.0 7671.0 2193.0 21911.0 21848.0 1358.0 1460.0 659.0 21353.0 468.0 870.0 9041.0 6368.0 0 0 0 0
MA0792.1_rc_shift4 (POU5F1B_rc)				; oligos_7nt_mkv4_m2 versus MA0792.1_rc (POU5F1B_rc); m=12/13; ncol2=9; w=9; offset=4; strand=R; shift=4; score=0.438542; ----ATTwrCATA------- ; cor=; Ncor= a 0 0 0 0 9519.0 203.0 896.0 3220.0 3828.0 1790.0 9519.0 84.0 9519.0 0 0 0 0 0 0 0 c 0 0 0 0 750.0 97.0 856.0 65.0 1293.0 9519.0 206.0 67.0 808.0 0 0 0 0 0 0 0 g 0 0 0 0 537.0 65.0 144.0 51.0 9519.0 94.0 364.0 21.0 1778.0 0 0 0 0 0 0 0 t 0 0 0 0 1559.0 9519.0 9519.0 6299.0 398.0 322.0 171.0 9519.0 1326.0 0 0 0 0 0 0 0
MA0789.1_rc_shift4 (POU3F4_rc)				; oligos_7nt_mkv4_m2 versus MA0789.1_rc (POU3F4_rc); m=13/13; ncol2=9; w=9; offset=4; strand=R; shift=4; score=0.433647; ----ATTwGCATA------- ; cor=; Ncor= a 0 0 0 0 11117.0 168.0 885.0 4670.0 2565.0 245.0 11117.0 26.0 11117.0 0 0 0 0 0 0 0 c 0 0 0 0 292.0 88.0 315.0 56.0 602.0 11117.0 24.0 68.0 136.0 0 0 0 0 0 0 0 g 0 0 0 0 247.0 47.0 332.0 10.0 11117.0 19.0 59.0 23.0 349.0 0 0 0 0 0 0 0 t 0 0 0 0 705.0 11117.0 11117.0 6447.0 136.0 53.0 59.0 11117.0 941.0 0 0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv4_m5_shift2 (oligos_7nt_mkv4_m5)				; oligos_7nt_mkv4_m5; m=0 (reference); ncol1=15; shift=2; ncol=17; --ccCCCCCaCCCCccc ; Alignment reference a 0 0 226 200 93 53 52 38 48 668 45 52 41 64 168 275 216 c 0 0 495 461 803 916 950 983 972 201 983 966 954 934 656 428 483 g 0 0 182 251 103 68 67 63 56 154 51 56 66 67 155 215 214 t 0 0 212 203 116 78 46 31 39 92 36 41 54 50 136 197 202
MA0039.4_shift3 (KLF4)				; oligos_7nt_mkv4_m5 versus MA0039.4 (KLF4); m=1/17; ncol2=12; w=12; offset=1; strand=D; shift=3; score=0.721001; ---ssCCCCACCChs-- ; cor=; Ncor= a 0 0 0 12570.0 11487.0 2465.0 2105.0 7021.0 1173.0 45602.0 852.0 1617.0 1202.0 16264.0 9959.0 0 0 c 0 0 0 17520.0 14038.0 49209.0 47865.0 45405.0 52875.0 161.0 52366.0 51112.0 51045.0 18249.0 19217.0 0 0 g 0 0 0 14243.0 18473.0 1583.0 1214.0 1422.0 793.0 6598.0 1470.0 1870.0 1005.0 6292.0 14422.0 0 0 t 0 0 0 11484.0 11819.0 2560.0 4633.0 1969.0 976.0 3456.0 1129.0 1218.0 2565.0 15012.0 12219.0 0 0
MA1653.1_shift3 (ZNF148)				; oligos_7nt_mkv4_m5 versus MA1653.1 (ZNF148); m=2/17; ncol2=12; w=12; offset=1; strand=D; shift=3; score=0.692213; ---ysCCCCTCCCcc-- ; cor=; Ncor= a 0 0 0 1399.0 1263.0 82.0 132.0 136.0 89.0 133.0 66.0 352.0 442.0 846.0 841.0 0 0 c 0 0 0 4593.0 4057.0 10799.0 10396.0 10526.0 10833.0 14.0 10954.0 9922.0 9283.0 7239.0 7114.0 0 0 g 0 0 0 2241.0 3215.0 205.0 471.0 401.0 211.0 1012.0 112.0 460.0 392.0 1924.0 2064.0 0 0 t 0 0 0 2966.0 2664.0 113.0 200.0 136.0 66.0 10040.0 67.0 465.0 1082.0 1190.0 1180.0 0 0
MA0753.2_shift3 (ZNF740)				; oligos_7nt_mkv4_m5 versus MA0753.2 (ZNF740); m=3/17; ncol2=13; w=13; offset=1; strand=D; shift=3; score=0.672695; ---cyrCCCCCCCCAc- ; cor=; Ncor= a 0 0 0 186.0 162.0 727.0 60.0 110.0 18.0 22.0 23.0 10.0 2.0 115.0 1055.0 207.0 0 c 0 0 0 502.0 677.0 343.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 239.0 1055.0 0 g 0 0 0 182.0 72.0 1055.0 37.0 14.0 4.0 7.0 3.0 7.0 3.0 6.0 68.0 54.0 0 t 0 0 0 185.0 378.0 312.0 49.0 1.0 16.0 15.0 11.0 6.0 3.0 4.0 134.0 246.0 0
MA0516.2_shift0 (SP2)				; oligos_7nt_mkv4_m5 versus MA0516.2 (SP2); m=4/17; ncol2=17; w=15; offset=-2; strand=D; shift=0; score=0.618282; mTAAGyCCCGCCCmCyy ; cor=; Ncor= a 256.0 53.0 613.0 753.0 54.0 34.0 14.0 16.0 4.0 82.0 0.0 5.0 23.0 402.0 22.0 109.0 150.0 c 308.0 171.0 76.0 84.0 127.0 456.0 774.0 786.0 788.0 52.0 795.0 793.0 774.0 390.0 679.0 221.0 203.0 g 123.0 57.0 0.0 33.0 791.0 8.0 1.0 13.0 22.0 780.0 0.0 26.0 0.0 22.0 1.0 0.0 88.0 t 106.0 608.0 180.0 67.0 43.0 327.0 0.0 8.0 12.0 45.0 18.0 7.0 27.0 17.0 101.0 503.0 352.0
MA1513.1_shift4 (KLF15)				; oligos_7nt_mkv4_m5 versus MA1513.1 (KLF15); m=5/17; ncol2=11; w=11; offset=2; strand=D; shift=4; score=0.599178; ----scCCCGCCCcs-- ; cor=; Ncor= a 0 0 0 0 1184.0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 1566.0 1067.0 0 0 c 0 0 0 0 2903.0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 6267.0 5013.0 0 0 g 0 0 0 0 5538.0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 1934.0 3124.0 0 0 t 0 0 0 0 1744.0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 1602.0 2165.0 0 0
MA1522.1_shift3 (MAZ)				; oligos_7nt_mkv4_m5 versus MA1522.1 (MAZ); m=6/17; ncol2=11; w=11; offset=1; strand=D; shift=3; score=0.595647; ---ssCCCCTCCcc--- ; cor=; Ncor= a 0 0 0 2480.0 1819.0 17.0 49.0 36.0 39.0 6.0 90.0 23.0 1109.0 2016.0 0 0 0 c 0 0 0 5198.0 5068.0 14945.0 14630.0 14731.0 14676.0 0.0 14961.0 14944.0 9372.0 6775.0 0 0 0 g 0 0 0 4277.0 5163.0 75.0 384.0 290.0 347.0 130.0 8.0 96.0 1768.0 2539.0 0 0 0 t 0 0 0 3108.0 3013.0 26.0 0.0 6.0 1.0 14927.0 4.0 0.0 2814.0 3733.0 0 0 0
MA1564.1_shift4 (SP9)				; oligos_7nt_mkv4_m5 versus MA1564.1 (SP9); m=7/17; ncol2=12; w=12; offset=2; strand=D; shift=4; score=0.58777; ----rcCmCGCCCmcy- ; cor=; Ncor= a 0 0 0 0 834.0 566.0 321.0 2451.0 2.0 211.0 22.0 0.0 39.0 1192.0 188.0 420.0 0 c 0 0 0 0 440.0 2451.0 2451.0 1127.0 2451.0 200.0 2451.0 2451.0 2451.0 1259.0 1863.0 1167.0 0 g 0 0 0 0 952.0 309.0 113.0 56.0 17.0 2451.0 0.0 0.0 24.0 38.0 191.0 204.0 0 t 0 0 0 0 226.0 518.0 284.0 96.0 9.0 173.0 14.0 30.0 412.0 353.0 588.0 660.0 0
MA0162.4_shift1 (EGR1)				; oligos_7nt_mkv4_m5 versus MA0162.4 (EGR1); m=8/17; ncol2=14; w=13; offset=-1; strand=D; shift=1; score=0.57969; -ccmCGCCCACgCms-- ; cor=; Ncor= a 0 7087.0 3997.0 14508.0 642.0 5110.0 227.0 1440.0 314.0 22297.0 153.0 4696.0 969.0 8903.0 3809.0 0 0 c 0 11610.0 14749.0 10303.0 28403.0 1131.0 29338.0 27321.0 28958.0 5420.0 29507.0 2806.0 25196.0 10441.0 13686.0 0 0 g 0 6621.0 7211.0 3854.0 756.0 22237.0 665.0 1455.0 698.0 2122.0 699.0 20544.0 2157.0 6345.0 7852.0 0 0 t 0 5280.0 4641.0 1933.0 797.0 2120.0 368.0 382.0 628.0 759.0 239.0 2552.0 2276.0 4909.0 5251.0 0 0
MA0599.1_shift4 (KLF5)				; oligos_7nt_mkv4_m5 versus MA0599.1 (KLF5); m=9/17; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.577291; ----gCCMCrCCCh--- ; cor=; Ncor= a 0 0 0 0 1429.0 0.0 0.0 3477.0 0.0 5051.0 0.0 0.0 0.0 3915.0 0 0 0 c 0 0 0 0 2023.0 11900.0 12008.0 9569.0 13611.0 0.0 13611.0 13611.0 13135.0 5595.0 0 0 0 g 0 0 0 0 7572.0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 0.0 0 0 0 t 0 0 0 0 2587.0 1711.0 1603.0 565.0 0.0 3378.0 0.0 0.0 476.0 4101.0 0 0 0
MA0741.1_shift4 (KLF16)				; oligos_7nt_mkv4_m5 versus MA0741.1 (KLF16); m=10/17; ncol2=11; w=11; offset=2; strand=D; shift=4; score=0.574497; ----gmCMCgCCCMC-- ; cor=; Ncor= a 0 0 0 0 666.0 901.0 62.0 1150.0 66.0 497.0 8.0 2.0 16.0 437.0 32.0 0 0 c 0 0 0 0 535.0 1612.0 1612.0 461.0 1612.0 173.0 1612.0 1612.0 1612.0 1175.0 1612.0 0 0 g 0 0 0 0 1612.0 77.0 6.0 32.0 17.0 1612.0 0.0 8.0 3.0 19.0 23.0 0 0 t 0 0 0 0 240.0 116.0 45.0 0.0 19.0 403.0 0.0 0.0 97.0 40.0 370.0 0 0
MA0747.1_shift4 (SP8)				; oligos_7nt_mkv4_m5 versus MA0747.1 (SP8); m=11/17; ncol2=12; w=12; offset=2; strand=D; shift=4; score=0.560344; ----rmCACgCCCmCy- ; cor=; Ncor= a 0 0 0 0 52.0 54.0 25.0 133.0 7.0 25.0 5.0 2.0 0.0 90.0 13.0 31.0 0 c 0 0 0 0 27.0 113.0 167.0 33.0 167.0 37.0 167.0 167.0 167.0 77.0 167.0 52.0 0 g 0 0 0 0 78.0 0.0 0.0 1.0 1.0 167.0 6.0 3.0 4.0 6.0 21.0 1.0 0 t 0 0 0 0 10.0 4.0 13.0 2.0 5.0 39.0 2.0 0.0 15.0 3.0 39.0 82.0 0
MA1515.1_shift3 (KLF2)				; oligos_7nt_mkv4_m5 versus MA1515.1 (KLF2); m=12/17; ncol2=11; w=11; offset=1; strand=D; shift=3; score=0.559873; ---srCCmCrCCCw--- ; cor=; Ncor= a 0 0 0 1054.0 2510.0 741.0 403.0 4622.0 0.0 1702.0 0.0 128.0 68.0 1838.0 0 0 0 c 0 0 0 1376.0 1103.0 4622.0 4622.0 2265.0 4622.0 274.0 4622.0 4622.0 4622.0 1142.0 0 0 0 g 0 0 0 1320.0 2112.0 495.0 186.0 1060.0 0.0 2920.0 49.0 195.0 105.0 389.0 0 0 0 t 0 0 0 872.0 433.0 346.0 312.0 214.0 78.0 167.0 22.0 9.0 444.0 1253.0 0 0 0
MA1511.1_shift4 (KLF10)				; oligos_7nt_mkv4_m5 versus MA1511.1 (KLF10); m=13/17; ncol2=11; w=11; offset=2; strand=D; shift=4; score=0.540226; ----gmCACrCCCmy-- ; cor=; Ncor= a 0 0 0 0 4746.0 6633.0 633.0 18751.0 238.0 13506.0 1.0 0.0 0.0 7545.0 934.0 0 0 c 0 0 0 0 2435.0 12654.0 19619.0 1663.0 19907.0 11.0 19995.0 19994.0 19244.0 11403.0 13118.0 0 0 g 0 0 0 0 14086.0 1299.0 98.0 1723.0 3.0 6234.0 2.0 0.0 0.0 587.0 770.0 0 0 t 0 0 0 0 1251.0 1373.0 485.0 6.0 157.0 543.0 0.0 0.0 2198.0 2686.0 6274.0 0 0
MA1512.1_shift6 (KLF11)				; oligos_7nt_mkv4_m5 versus MA1512.1 (KLF11); m=14/17; ncol2=11; w=11; offset=4; strand=D; shift=6; score=0.527784; ------gcCACGCCCmC ; cor=; Ncor= a 0 0 0 0 0 0 1882.0 2022.0 650.0 8655.0 0.0 2426.0 11.0 1.0 0.0 4689.0 581.0 c 0 0 0 0 0 0 2054.0 5549.0 8662.0 1289.0 9142.0 52.0 9161.0 9166.0 8941.0 4226.0 8403.0 g 0 0 0 0 0 0 3930.0 401.0 156.0 115.0 0.0 8291.0 18.0 20.0 4.0 69.0 358.0 t 0 0 0 0 0 0 1299.0 1192.0 506.0 27.0 38.0 349.0 23.0 7.0 885.0 761.0 1281.0
MA1630.1_rc_shift1 (Znf281_rc)				; oligos_7nt_mkv4_m5 versus MA1630.1_rc (Znf281_rc); m=15/17; ncol2=11; w=10; offset=-1; strand=R; shift=1; score=0.525323; -CcTCCCCCAcc----- ; cor=; Ncor= a 0 315.0 1103.0 11.0 52.0 29.0 23.0 24.0 12.0 6298.0 745.0 954.0 0 0 0 0 0 c 0 5523.0 4312.0 8.0 6457.0 6402.0 6378.0 6356.0 6449.0 29.0 3751.0 3539.0 0 0 0 0 0 g 0 356.0 418.0 45.0 41.0 115.0 131.0 163.0 88.0 233.0 1076.0 878.0 0 0 0 0 0 t 0 374.0 735.0 6504.0 18.0 22.0 36.0 25.0 19.0 8.0 996.0 1197.0 0 0 0 0 0
MA1627.1_shift5 (Wt1)				; oligos_7nt_mkv4_m5 versus MA1627.1 (Wt1); m=16/17; ncol2=14; w=12; offset=3; strand=D; shift=5; score=0.523312; -----cycCTCCCCCAC ; cor=; Ncor= a 0 0 0 0 0 876.0 667.0 839.0 48.0 120.0 21.0 40.0 43.0 850.0 31.0 3294.0 158.0 c 0 0 0 0 0 1881.0 1630.0 2948.0 4546.0 69.0 4602.0 4354.0 4252.0 3636.0 4573.0 53.0 3749.0 g 0 0 0 0 0 794.0 1161.0 404.0 58.0 319.0 42.0 75.0 120.0 101.0 46.0 990.0 436.0 t 0 0 0 0 0 1140.0 1233.0 500.0 39.0 4183.0 26.0 222.0 276.0 104.0 41.0 354.0 348.0
MA1578.1_shift7 (VEZF1)				; oligos_7nt_mkv4_m5 versus MA1578.1 (VEZF1); m=17/17; ncol2=10; w=10; offset=5; strand=D; shift=7; score=0.519482; -------CCCCCCmytw ; cor=; Ncor= a 0 0 0 0 0 0 0 71.0 1.0 4.0 2.0 6.0 10.0 406.0 44.0 240.0 333.0 c 0 0 0 0 0 0 0 790.0 997.0 995.0 997.0 989.0 977.0 357.0 550.0 171.0 173.0 g 0 0 0 0 0 0 0 137.0 0.0 0.0 0.0 0.0 3.0 110.0 70.0 211.0 152.0 t 0 0 0 0 0 0 0 0.0 0.0 0.0 0.0 4.0 8.0 125.0 334.0 377.0 339.0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv3_m5_shift5 (oligos_6nt_mkv3_m5)				; oligos_6nt_mkv3_m5; m=0 (reference); ncol1=14; shift=5; ncol=19; -----amaAAACAAAGcma ; Alignment reference a 0 0 0 0 0 265 218 421 586 628 671 13 688 646 649 124 171 263 273 c 0 0 0 0 0 119 225 95 25 34 9 643 10 30 16 62 335 187 152 g 0 0 0 0 0 178 148 95 24 29 28 32 8 25 24 492 127 139 151 t 0 0 0 0 0 155 126 106 82 26 9 29 11 16 28 39 84 128 141
MA0442.2_shift7 (SOX10)				; oligos_6nt_mkv3_m5 versus MA0442.2 (SOX10); m=1/22; ncol2=11; w=11; offset=2; strand=D; shift=7; score=0.719035; -------rraACAAAGvm- ; cor=; Ncor= a 0 0 0 0 0 0 0 683.0 723.0 1118.0 2023.0 3.0 2029.0 1968.0 1959.0 10.0 666.0 638.0 0 c 0 0 0 0 0 0 0 397.0 283.0 372.0 4.0 1989.0 7.0 28.0 23.0 13.0 552.0 555.0 0 g 0 0 0 0 0 0 0 527.0 571.0 317.0 3.0 11.0 7.0 20.0 12.0 2012.0 619.0 505.0 0 t 0 0 0 0 0 0 0 448.0 478.0 248.0 25.0 52.0 12.0 39.0 61.0 20.0 218.0 357.0 0
MA0514.1_rc_shift7 (Sox3_rc)				; oligos_6nt_mkv3_m5 versus MA0514.1_rc (Sox3_rc); m=2/22; ncol2=10; w=10; offset=2; strand=R; shift=7; score=0.638326; -------rrrACAAAGG-- ; cor=; Ncor= a 0 0 0 0 0 0 0 989.0 1173.0 1115.0 2067.0 0.0 2067.0 2067.0 1805.0 515.0 250.0 0 0 c 0 0 0 0 0 0 0 382.0 22.0 254.0 0.0 1923.0 0.0 0.0 0.0 0.0 330.0 0 0 g 0 0 0 0 0 0 0 654.0 853.0 698.0 0.0 144.0 0.0 0.0 0.0 1552.0 1487.0 0 0 t 0 0 0 0 0 0 0 42.0 19.0 0.0 0.0 0.0 0.0 0.0 262.0 0.0 0.0 0 0
MA0867.2_shift8 (SOX4)				; oligos_6nt_mkv3_m5 versus MA0867.2 (SOX4); m=3/22; ncol2=10; w=10; offset=3; strand=D; shift=8; score=0.628273; --------gaACAAwGrv- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 3190.0 5582.0 5582.0 0.0 5582.0 5582.0 5582.0 1018.0 2093.0 1775.0 0 c 0 0 0 0 0 0 0 0 1771.0 951.0 0.0 5582.0 1.0 6.0 120.0 64.0 1422.0 1438.0 0 g 0 0 0 0 0 0 0 0 5582.0 2047.0 0.0 37.0 6.0 11.0 50.0 5582.0 3489.0 1889.0 0 t 0 0 0 0 0 0 0 0 2286.0 431.0 9.0 33.0 0.0 0.0 2719.0 83.0 174.0 480.0 0
MA0515.1_rc_shift7 (Sox6_rc)				; oligos_6nt_mkv3_m5 versus MA0515.1_rc (Sox6_rc); m=4/22; ncol2=10; w=10; offset=2; strand=R; shift=7; score=0.587115; -------rrrACAAwGg-- ; cor=; Ncor= a 0 0 0 0 0 0 0 128.0 133.0 129.0 249.0 0.0 249.0 249.0 88.0 28.0 56.0 0 0 c 0 0 0 0 0 0 0 31.0 0.0 5.0 0.0 249.0 0.0 0.0 0.0 0.0 50.0 0 0 g 0 0 0 0 0 0 0 76.0 112.0 115.0 0.0 0.0 0.0 0.0 0.0 221.0 139.0 0 0 t 0 0 0 0 0 0 0 14.0 4.0 0.0 0.0 0.0 0.0 0.0 161.0 0.0 4.0 0 0
MA1152.1_rc_shift7 (SOX15_rc)				; oligos_6nt_mkv3_m5 versus MA1152.1_rc (SOX15_rc); m=5/22; ncol2=10; w=10; offset=2; strand=R; shift=7; score=0.578007; -------araACAAwrr-- ; cor=; Ncor= a 0 0 0 0 0 0 0 407.0 418.0 506.0 971.0 5.0 994.0 988.0 362.0 501.0 267.0 0 0 c 0 0 0 0 0 0 0 165.0 114.0 125.0 3.0 890.0 2.0 6.0 5.0 26.0 147.0 0 0 g 0 0 0 0 0 0 0 188.0 253.0 188.0 2.0 21.0 2.0 3.0 3.0 412.0 554.0 0 0 t 0 0 0 0 0 0 0 241.0 215.0 180.0 24.0 83.0 3.0 3.0 631.0 62.0 32.0 0 0
MA0851.1_shift1 (Foxj3)				; oligos_6nt_mkv3_m5 versus MA0851.1 (Foxj3); m=6/22; ncol2=17; w=13; offset=-4; strand=D; shift=1; score=0.565815; -hraarRTAAACAAwsmc- ; cor=; Ncor= a 0 27.0 34.0 48.0 51.0 35.0 30.0 1.0 91.0 96.0 99.0 0.0 99.0 79.0 57.0 22.0 27.0 24.0 0 c 0 26.0 13.0 19.0 13.0 13.0 1.0 2.0 8.0 2.0 0.0 81.0 0.0 7.0 9.0 34.0 27.0 39.0 0 g 0 21.0 31.0 16.0 17.0 33.0 68.0 0.0 0.0 0.0 0.0 0.0 0.0 6.0 7.0 26.0 24.0 17.0 0 t 0 26.0 22.0 17.0 19.0 20.0 0.0 97.0 0.0 3.0 1.0 18.0 1.0 9.0 27.0 18.0 22.0 19.0 0
MA0084.1_shift6 (SRY)				; oligos_6nt_mkv3_m5 versus MA0084.1 (SRY); m=7/22; ncol2=9; w=9; offset=1; strand=D; shift=6; score=0.530049; ------kwwaACAAw---- ; cor=; Ncor= a 0 0 0 0 0 0 5.0 8.0 15.0 18.0 25.0 0.0 28.0 27.0 7.0 0 0 0 0 c 0 0 0 0 0 0 5.0 3.0 0.0 3.0 0.0 26.0 0.0 0.0 0.0 0 0 0 0 g 0 0 0 0 0 0 10.0 4.0 3.0 3.0 0.0 0.0 0.0 1.0 2.0 0 0 0 0 t 0 0 0 0 0 0 8.0 13.0 10.0 4.0 3.0 2.0 0.0 0.0 19.0 0 0 0 0
MA1125.1_shift4 (ZNF384)				; oligos_6nt_mkv3_m5 versus MA1125.1 (ZNF384); m=8/22; ncol2=12; w=11; offset=-1; strand=D; shift=4; score=0.527177; ----wwwmAAAAAAaa--- ; cor=; Ncor= a 0 0 0 0 9460.0 9116.0 9522.0 13125.0 30354.0 30191.0 30072.0 30252.0 30202.0 30406.0 20322.0 18916.0 0 0 0 c 0 0 0 0 4945.0 7025.0 3456.0 7691.0 7.0 35.0 21.0 13.0 26.0 6.0 2908.0 3963.0 0 0 0 g 0 0 0 0 5650.0 5133.0 4678.0 4721.0 13.0 19.0 26.0 15.0 14.0 0.0 2767.0 2898.0 0 0 0 t 0 0 0 0 10378.0 9159.0 12777.0 4896.0 59.0 188.0 314.0 153.0 191.0 21.0 4436.0 4656.0 0 0 0
MA0868.2_shift7 (SOX8)				; oligos_6nt_mkv3_m5 versus MA0868.2 (SOX8); m=9/22; ncol2=10; w=10; offset=2; strand=D; shift=7; score=0.527117; -------agAACAATrg-- ; cor=; Ncor= a 0 0 0 0 0 0 0 1827.0 740.0 1827.0 1827.0 3.0 1827.0 1827.0 273.0 1356.0 300.0 0 0 c 0 0 0 0 0 0 0 1124.0 414.0 151.0 0.0 1827.0 0.0 43.0 36.0 208.0 421.0 0 0 g 0 0 0 0 0 0 0 854.0 1827.0 263.0 0.0 35.0 0.0 0.0 20.0 1827.0 912.0 0 0 t 0 0 0 0 0 0 0 724.0 571.0 222.0 45.0 70.0 16.0 36.0 1827.0 287.0 193.0 0 0
MA0593.1_shift4 (FOXP2)				; oligos_6nt_mkv3_m5 versus MA0593.1 (FOXP2); m=10/22; ncol2=11; w=10; offset=-1; strand=D; shift=4; score=0.506249; ----awGTAAACAra---- ; cor=; Ncor= a 0 0 0 0 330.0 340.0 160.0 59.0 766.0 766.0 766.0 0.0 766.0 297.0 332.0 0 0 0 0 c 0 0 0 0 113.0 7.0 0.0 0.0 0.0 0.0 0.0 757.0 0.0 154.0 124.0 0 0 0 0 g 0 0 0 0 190.0 142.0 606.0 0.0 0.0 0.0 0.0 0.0 0.0 293.0 184.0 0 0 0 0 t 0 0 0 0 133.0 277.0 0.0 707.0 0.0 0.0 0.0 9.0 0.0 22.0 126.0 0 0 0 0
MA1606.1_shift4 (Foxf1)				; oligos_6nt_mkv3_m5 versus MA1606.1 (Foxf1); m=11/22; ncol2=11; w=10; offset=-1; strand=D; shift=4; score=0.486528; ----awrTAAACAaa---- ; cor=; Ncor= a 0 0 0 0 23159.0 17275.0 18534.0 568.0 57293.0 53942.0 57167.0 437.0 56436.0 18673.0 20323.0 0 0 0 0 c 0 0 0 0 10753.0 7560.0 3754.0 446.0 899.0 2249.0 475.0 54394.0 745.0 12643.0 11715.0 0 0 0 0 g 0 0 0 0 12462.0 8287.0 33599.0 1158.0 445.0 811.0 1067.0 522.0 443.0 14294.0 12844.0 0 0 0 0 t 0 0 0 0 13166.0 26418.0 3653.0 57368.0 903.0 2538.0 831.0 4187.0 1916.0 13930.0 14658.0 0 0 0 0
MA0846.1_shift3 (FOXC2)				; oligos_6nt_mkv3_m5 versus MA0846.1 (FOXC2); m=12/22; ncol2=12; w=10; offset=-2; strand=D; shift=3; score=0.485664; ---wAwrTAAAYAww---- ; cor=; Ncor= a 0 0 0 8939.0 20456.0 11301.0 6418.0 2005.0 20456.0 20456.0 20456.0 31.0 20456.0 13296.0 10995.0 0 0 0 0 c 0 0 0 1279.0 1652.0 3476.0 440.0 3773.0 6759.0 344.0 105.0 14435.0 101.0 2087.0 3080.0 0 0 0 0 g 0 0 0 454.0 5093.0 3129.0 14038.0 321.0 87.0 81.0 279.0 68.0 328.0 1710.0 2649.0 0 0 0 0 t 0 0 0 11517.0 2080.0 9155.0 136.0 20456.0 122.0 107.0 242.0 6021.0 215.0 7160.0 9461.0 0 0 0 0
MA0614.1_shift6 (Foxj2)				; oligos_6nt_mkv3_m5 versus MA0614.1 (Foxj2); m=13/22; ncol2=8; w=8; offset=1; strand=D; shift=6; score=0.472946; ------rTAAACAa----- ; cor=; Ncor= a 0 0 0 0 0 0 461.0 50.0 795.0 977.0 999.0 0.0 999.0 593.0 0 0 0 0 0 c 0 0 0 0 0 0 0.0 25.0 205.0 0.0 0.0 954.0 0.0 125.0 0 0 0 0 0 g 0 0 0 0 0 0 538.0 0.0 0.0 0.0 0.0 0.0 0.0 125.0 0 0 0 0 0 t 0 0 0 0 0 0 0.0 924.0 0.0 22.0 0.0 46.0 0.0 156.0 0 0 0 0 0
MA1489.1_shift6 (FOXN3)				; oligos_6nt_mkv3_m5 versus MA1489.1 (FOXN3); m=14/22; ncol2=8; w=8; offset=1; strand=D; shift=6; score=0.463516; ------GTAAACAA----- ; cor=; Ncor= a 0 0 0 0 0 0 9.0 9.0 971.0 971.0 971.0 9.0 971.0 971.0 0 0 0 0 0 c 0 0 0 0 0 0 9.0 9.0 9.0 9.0 9.0 971.0 9.0 9.0 0 0 0 0 0 g 0 0 0 0 0 0 971.0 9.0 9.0 9.0 9.0 9.0 9.0 9.0 0 0 0 0 0 t 0 0 0 0 0 0 9.0 971.0 9.0 9.0 9.0 9.0 9.0 9.0 0 0 0 0 0
MA0613.1_shift6 (FOXG1)				; oligos_6nt_mkv3_m5 versus MA0613.1 (FOXG1); m=15/22; ncol2=8; w=8; offset=1; strand=D; shift=6; score=0.457121; ------rTAAACAw----- ; cor=; Ncor= a 0 0 0 0 0 0 374.0 1.0 997.0 997.0 997.0 1.0 997.0 498.0 0 0 0 0 0 c 0 0 0 0 0 0 1.0 1.0 1.0 1.0 1.0 997.0 1.0 167.0 0 0 0 0 0 g 0 0 0 0 0 0 623.0 1.0 1.0 1.0 1.0 1.0 1.0 2.0 0 0 0 0 0 t 0 0 0 0 0 0 1.0 997.0 1.0 1.0 1.0 1.0 1.0 333.0 0 0 0 0 0
MA0157.2_shift6 (FOXO3)				; oligos_6nt_mkv3_m5 versus MA0157.2 (FOXO3); m=16/22; ncol2=8; w=8; offset=1; strand=D; shift=6; score=0.436706; ------GTAAACAw----- ; cor=; Ncor= a 0 0 0 0 0 0 21.0 0.0 532.0 532.0 532.0 15.0 532.0 317.0 0 0 0 0 0 c 0 0 0 0 0 0 0.0 0.0 16.0 1.0 10.0 532.0 11.0 12.0 0 0 0 0 0 g 0 0 0 0 0 0 532.0 13.0 5.0 0.0 0.0 0.0 0.0 36.0 0 0 0 0 0 t 0 0 0 0 0 0 0.0 532.0 1.0 0.0 0.0 3.0 0.0 215.0 0 0 0 0 0
MA0031.1_shift6 (FOXD1)				; oligos_6nt_mkv3_m5 versus MA0031.1 (FOXD1); m=17/22; ncol2=8; w=8; offset=1; strand=D; shift=6; score=0.420545; ------GTAAACAw----- ; cor=; Ncor= a 0 0 0 0 0 0 1.0 0.0 19.0 20.0 18.0 1.0 20.0 7.0 0 0 0 0 0 c 0 0 0 0 0 0 1.0 0.0 1.0 0.0 1.0 18.0 0.0 2.0 0 0 0 0 0 g 0 0 0 0 0 0 17.0 0.0 0.0 0.0 1.0 0.0 0.0 3.0 0 0 0 0 0 t 0 0 0 0 0 0 1.0 20.0 0.0 0.0 0.0 1.0 0.0 8.0 0 0 0 0 0
MA1487.1_shift0 (FOXE1)				; oligos_6nt_mkv3_m5 versus MA1487.1 (FOXE1); m=18/22; ncol2=15; w=10; offset=-5; strand=D; shift=0; score=0.412536; cvyTAARyAAACAay---- ; cor=; Ncor= a 54.0 288.0 37.0 191.0 664.0 664.0 664.0 0.0 664.0 664.0 664.0 0.0 664.0 521.0 148.0 0 0 0 0 c 289.0 381.0 298.0 0.0 15.0 57.0 0.0 324.0 10.0 8.0 0.0 664.0 0.0 84.0 180.0 0 0 0 0 g 165.0 283.0 38.0 0.0 30.0 58.0 228.0 0.0 0.0 0.0 0.0 0.0 3.0 123.0 100.0 0 0 0 0 t 155.0 0.0 366.0 664.0 0.0 194.0 0.0 340.0 0.0 0.0 0.0 0.0 0.0 142.0 235.0 0 0 0 0
MA0850.1_shift6 (FOXP3)				; oligos_6nt_mkv3_m5 versus MA0850.1 (FOXP3); m=19/22; ncol2=7; w=7; offset=1; strand=D; shift=6; score=0.411593; ------rTAAACA------ ; cor=; Ncor= a 0 0 0 0 0 0 74.0 20.0 211.0 211.0 211.0 0.0 211.0 0 0 0 0 0 0 c 0 0 0 0 0 0 0.0 52.0 0.0 0.0 15.0 211.0 0.0 0 0 0 0 0 0 g 0 0 0 0 0 0 137.0 0.0 0.0 9.0 49.0 32.0 18.0 0 0 0 0 0 0 t 0 0 0 0 0 0 0.0 211.0 31.0 8.0 0.0 39.0 0.0 0 0 0 0 0 0
MA0033.2_shift6 (FOXL1)				; oligos_6nt_mkv3_m5 versus MA0033.2 (FOXL1); m=20/22; ncol2=7; w=7; offset=1; strand=D; shift=6; score=0.40967; ------rTAAACA------ ; cor=; Ncor= a 0 0 0 0 0 0 2102.0 10.0 4780.0 4780.0 4780.0 0.0 4780.0 0 0 0 0 0 0 c 0 0 0 0 0 0 13.0 416.0 628.0 38.0 82.0 3723.0 54.0 0 0 0 0 0 0 g 0 0 0 0 0 0 2678.0 0.0 57.0 0.0 50.0 0.0 0.0 0 0 0 0 0 0 t 0 0 0 0 0 0 140.0 4780.0 0.0 15.0 0.0 1057.0 17.0 0 0 0 0 0 0
MA0848.1_shift6 (FOXO4)				; oligos_6nt_mkv3_m5 versus MA0848.1 (FOXO4); m=21/22; ncol2=7; w=7; offset=1; strand=D; shift=6; score=0.404251; ------GTAAACA------ ; cor=; Ncor= a 0 0 0 0 0 0 1669.0 345.0 5378.0 5378.0 5378.0 58.0 5378.0 0 0 0 0 0 0 c 0 0 0 0 0 0 13.0 69.0 1259.0 146.0 0.0 5378.0 10.0 0 0 0 0 0 0 g 0 0 0 0 0 0 5378.0 123.0 32.0 19.0 90.0 33.0 10.0 0 0 0 0 0 0 t 0 0 0 0 0 0 0.0 5378.0 20.0 20.0 10.0 958.0 40.0 0 0 0 0 0 0
MA0030.1_shift1 (FOXF2)				; oligos_6nt_mkv3_m5 versus MA0030.1 (FOXF2); m=22/22; ncol2=14; w=10; offset=-4; strand=D; shift=1; score=0.404137; -bmaasRTAAACAaw---- ; cor=; Ncor= a 0 1.0 10.0 17.0 13.0 3.0 7.0 0.0 27.0 27.0 27.0 0.0 27.0 16.0 7.0 0 0 0 0 c 0 10.0 7.0 4.0 5.0 11.0 0.0 0.0 0.0 0.0 0.0 25.0 0.0 4.0 4.0 0 0 0 0 g 0 7.0 5.0 2.0 5.0 8.0 20.0 0.0 0.0 0.0 0.0 0.0 0.0 2.0 6.0 0 0 0 0 t 0 9.0 5.0 4.0 5.0 0.0 0.0 27.0 0.0 0.0 0.0 2.0 0.0 5.0 10.0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv3_m3_shift0 (oligos_6nt_mkv3_m3)				; oligos_6nt_mkv3_m3; m=0 (reference); ncol1=21; shift=0; ncol=21; yhcaTTTGCATaAcAAwgsmm ; Alignment reference a 141 209 180 501 47 82 96 99 42 766 25 519 544 55 658 688 459 195 178 270 218 c 223 205 311 89 38 104 22 40 726 12 29 59 32 501 49 31 39 58 219 216 233 g 189 146 126 96 24 45 8 633 9 5 13 123 28 148 24 43 42 485 306 181 169 t 237 230 173 104 681 559 664 18 13 7 723 89 186 86 59 28 250 52 87 123 170
MA0142.1_rc_shift3 (Pou5f1::Sox2_rc)				; oligos_6nt_mkv3_m3 versus MA0142.1_rc (Pou5f1::Sox2_rc); m=1/13; ncol2=15; w=15; offset=3; strand=R; shift=3; score=0.705446; ---aTtTGCATrwsAAwr--- ; cor=; Ncor= a 0 0 0 837.0 53.0 92.0 269.0 196.0 104.0 1332.0 80.0 612.0 907.0 63.0 1231.0 1270.0 701.0 389.0 0 0 0 c 0 0 0 207.0 75.0 315.0 30.0 129.0 1239.0 15.0 24.0 186.0 29.0 825.0 79.0 36.0 28.0 66.0 0 0 0 g 0 0 0 119.0 33.0 68.0 16.0 1029.0 16.0 5.0 30.0 365.0 18.0 363.0 12.0 50.0 58.0 846.0 0 0 0 t 0 0 0 198.0 1200.0 887.0 1050.0 14.0 10.0 17.0 1235.0 206.0 415.0 118.0 47.0 11.0 579.0 63.0 0 0 0
MA0507.1_shift0 (POU2F2)				; oligos_6nt_mkv3_m3 versus MA0507.1 (POU2F2); m=2/13; ncol2=13; w=13; offset=0; strand=D; shift=0; score=0.585843; ykmATTTGCATrw-------- ; cor=; Ncor= a 415.0 530.0 605.0 2016.0 0.0 256.0 0.0 158.0 0.0 2257.0 0.0 1159.0 594.0 0 0 0 0 0 0 0 0 c 635.0 266.0 825.0 19.0 0.0 2.0 0.0 0.0 2271.0 30.0 2.0 39.0 361.0 0 0 0 0 0 0 0 0 g 402.0 593.0 415.0 1.0 0.0 0.0 0.0 1997.0 0.0 0.0 0.0 613.0 107.0 0 0 0 0 0 0 0 0 t 835.0 898.0 442.0 251.0 2287.0 2029.0 2287.0 132.0 16.0 0.0 2285.0 476.0 1225.0 0 0 0 0 0 0 0 0
MA0784.1_rc_shift0 (POU1F1_rc)				; oligos_6nt_mkv3_m3 versus MA0784.1_rc (POU1F1_rc); m=3/13; ncol2=14; w=14; offset=0; strand=R; shift=0; score=0.571749; cTmATTwGCATAwt------- ; cor=; Ncor= a 547.0 273.0 1287.0 2128.0 3.0 85.0 861.0 536.0 176.0 2128.0 19.0 2128.0 1000.0 397.0 0 0 0 0 0 0 0 c 2128.0 194.0 840.0 40.0 0.0 82.0 7.0 164.0 2128.0 26.0 32.0 108.0 187.0 273.0 0 0 0 0 0 0 0 g 479.0 174.0 241.0 37.0 10.0 11.0 12.0 2128.0 11.0 74.0 14.0 83.0 123.0 247.0 0 0 0 0 0 0 0 t 736.0 2128.0 222.0 76.0 2128.0 2128.0 1267.0 98.0 28.0 45.0 2128.0 276.0 1128.0 1211.0 0 0 0 0 0 0 0
MA0627.2_rc_shift1 (POU2F3_rc)				; oligos_6nt_mkv3_m3 versus MA0627.2_rc (POU2F3_rc); m=4/13; ncol2=13; w=13; offset=1; strand=R; shift=1; score=0.571676; -wwATTTGCATatw------- ; cor=; Ncor= a 0 17245.0 15909.0 43338.0 330.0 3276.0 896.0 3716.0 2827.0 53366.0 931.0 37593.0 13775.0 16525.0 0 0 0 0 0 0 0 c 0 7941.0 13237.0 4098.0 233.0 804.0 138.0 1079.0 51971.0 1251.0 354.0 3029.0 8770.0 10722.0 0 0 0 0 0 0 0 g 0 11936.0 10595.0 3478.0 164.0 567.0 80.0 50288.0 251.0 322.0 194.0 6885.0 6824.0 11383.0 0 0 0 0 0 0 0 t 0 18907.0 16288.0 5115.0 55302.0 51382.0 54915.0 946.0 980.0 1090.0 54550.0 8522.0 26660.0 17399.0 0 0 0 0 0 0 0
MA0786.1_rc_shift1 (POU3F1_rc)				; oligos_6nt_mkv3_m3 versus MA0786.1_rc (POU3F1_rc); m=5/13; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.537164; -wmATTwrCATAw-------- ; cor=; Ncor= a 0 961.0 1167.0 2471.0 63.0 284.0 1048.0 1119.0 232.0 2471.0 21.0 2471.0 1437.0 0 0 0 0 0 0 0 0 c 0 452.0 620.0 128.0 25.0 130.0 21.0 413.0 2471.0 21.0 26.0 128.0 322.0 0 0 0 0 0 0 0 0 g 0 478.0 302.0 95.0 20.0 103.0 1.0 2471.0 13.0 53.0 7.0 186.0 126.0 0 0 0 0 0 0 0 0 t 0 1510.0 382.0 259.0 2471.0 2471.0 1423.0 170.0 37.0 44.0 2471.0 505.0 1034.0 0 0 0 0 0 0 0 0
MA0788.1_rc_shift1 (POU3F3_rc)				; oligos_6nt_mkv3_m3 versus MA0788.1_rc (POU3F3_rc); m=6/13; ncol2=13; w=13; offset=1; strand=R; shift=1; score=0.530106; -waATTwGCATAww------- ; cor=; Ncor= a 0 542.0 1078.0 1078.0 14.0 79.0 572.0 343.0 86.0 1078.0 30.0 1078.0 637.0 290.0 0 0 0 0 0 0 0 c 0 115.0 237.0 12.0 15.0 77.0 1.0 118.0 1078.0 49.0 12.0 64.0 131.0 137.0 0 0 0 0 0 0 0 g 0 85.0 141.0 20.0 6.0 11.0 4.0 1078.0 10.0 33.0 11.0 57.0 41.0 75.0 0 0 0 0 0 0 0 t 0 536.0 240.0 53.0 1078.0 1078.0 506.0 28.0 22.0 25.0 1078.0 129.0 440.0 576.0 0 0 0 0 0 0 0
MA0787.1_rc_shift1 (POU3F2_rc)				; oligos_6nt_mkv3_m3 versus MA0787.1_rc (POU3F2_rc); m=7/13; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.527342; -tmATTwGCATAw-------- ; cor=; Ncor= a 0 562.0 840.0 1292.0 13.0 45.0 604.0 372.0 60.0 1292.0 0.0 1292.0 700.0 0 0 0 0 0 0 0 0 c 0 261.0 452.0 28.0 0.0 32.0 1.0 153.0 1292.0 12.0 25.0 40.0 171.0 0 0 0 0 0 0 0 0 g 0 262.0 165.0 19.0 6.0 16.0 4.0 1292.0 9.0 30.0 16.0 65.0 61.0 0 0 0 0 0 0 0 0 t 0 1292.0 137.0 63.0 1292.0 1292.0 688.0 68.0 19.0 28.0 1292.0 163.0 591.0 0 0 0 0 0 0 0 0
MA0785.1_rc_shift2 (POU2F1_rc)				; oligos_6nt_mkv3_m3 versus MA0785.1_rc (POU2F1_rc); m=8/13; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.519316; --aATTwgCATAwt------- ; cor=; Ncor= a 0 0 4262.0 10582.0 158.0 787.0 3651.0 3375.0 1326.0 10582.0 43.0 10582.0 5231.0 2075.0 0 0 0 0 0 0 0 c 0 0 2504.0 755.0 51.0 879.0 46.0 1351.0 10582.0 213.0 29.0 474.0 2142.0 1494.0 0 0 0 0 0 0 0 g 0 0 1840.0 457.0 37.0 108.0 33.0 10582.0 82.0 501.0 12.0 1347.0 1046.0 1938.0 0 0 0 0 0 0 0 t 0 0 1976.0 1422.0 10582.0 10582.0 6932.0 300.0 186.0 153.0 10582.0 756.0 5351.0 5076.0 0 0 0 0 0 0 0
MA0043.3_rc_shift2 (HLF_rc)				; oligos_6nt_mkv3_m3 versus MA0043.3_rc (HLF_rc); m=9/13; ncol2=14; w=14; offset=2; strand=R; shift=2; score=0.503309; --wkrTTRCATAAyhw----- ; cor=; Ncor= a 0 0 6732.0 5897.0 6488.0 113.0 98.0 6653.0 189.0 22426.0 209.0 23271.0 23739.0 1410.0 7927.0 6925.0 0 0 0 0 0 c 0 0 5523.0 3218.0 3300.0 189.0 48.0 199.0 21705.0 253.0 1344.0 895.0 148.0 9793.0 6297.0 5626.0 0 0 0 0 0 g 0 0 5267.0 6412.0 13237.0 67.0 122.0 17203.0 112.0 1548.0 125.0 96.0 242.0 4432.0 4009.0 5063.0 0 0 0 0 0 t 0 0 6902.0 8897.0 1399.0 24055.0 24156.0 369.0 2418.0 197.0 22746.0 162.0 295.0 8789.0 6191.0 6810.0 0 0 0 0 0
MA1115.1_rc_shift2 (POU5F1_rc)				; oligos_6nt_mkv3_m3 versus MA1115.1_rc (POU5F1_rc); m=10/13; ncol2=11; w=11; offset=2; strand=R; shift=2; score=0.502564; --haTTTGCATww-------- ; cor=; Ncor= a 0 0 3637.0 6383.0 307.0 838.0 1108.0 1723.0 634.0 12834.0 70.0 4818.0 4846.0 0 0 0 0 0 0 0 0 c 0 0 3551.0 2071.0 257.0 1026.0 118.0 548.0 11571.0 67.0 229.0 1908.0 1996.0 0 0 0 0 0 0 0 0 g 0 0 2450.0 2104.0 270.0 690.0 132.0 10310.0 192.0 130.0 122.0 2785.0 1290.0 0 0 0 0 0 0 0 0 t 0 0 3476.0 2556.0 12280.0 10560.0 11756.0 533.0 717.0 83.0 12693.0 3603.0 4982.0 0 0 0 0 0 0 0 0
MA0025.2_rc_shift2 (NFIL3_rc)				; oligos_6nt_mkv3_m3 versus MA0025.2_rc (NFIL3_rc); m=11/13; ncol2=13; w=13; offset=2; strand=R; shift=2; score=0.478461; --wtaTTrCATAAyw------ ; cor=; Ncor= a 0 0 6893.0 5543.0 13143.0 474.0 434.0 9180.0 610.0 20334.0 433.0 20606.0 20927.0 2798.0 7109.0 0 0 0 0 0 0 c 0 0 4482.0 4152.0 2701.0 360.0 171.0 454.0 20459.0 492.0 990.0 1714.0 518.0 7261.0 5615.0 0 0 0 0 0 0 g 0 0 4929.0 5630.0 4959.0 251.0 543.0 12004.0 467.0 1511.0 220.0 208.0 681.0 3896.0 3904.0 0 0 0 0 0 0 t 0 0 6692.0 7671.0 2193.0 21911.0 21848.0 1358.0 1460.0 659.0 21353.0 468.0 870.0 9041.0 6368.0 0 0 0 0 0 0
MA0792.1_rc_shift3 (POU5F1B_rc)				; oligos_6nt_mkv3_m3 versus MA0792.1_rc (POU5F1B_rc); m=12/13; ncol2=9; w=9; offset=3; strand=R; shift=3; score=0.416653; ---ATTwrCATA--------- ; cor=; Ncor= a 0 0 0 9519.0 203.0 896.0 3220.0 3828.0 1790.0 9519.0 84.0 9519.0 0 0 0 0 0 0 0 0 0 c 0 0 0 750.0 97.0 856.0 65.0 1293.0 9519.0 206.0 67.0 808.0 0 0 0 0 0 0 0 0 0 g 0 0 0 537.0 65.0 144.0 51.0 9519.0 94.0 364.0 21.0 1778.0 0 0 0 0 0 0 0 0 0 t 0 0 0 1559.0 9519.0 9519.0 6299.0 398.0 322.0 171.0 9519.0 1326.0 0 0 0 0 0 0 0 0 0
MA0789.1_rc_shift3 (POU3F4_rc)				; oligos_6nt_mkv3_m3 versus MA0789.1_rc (POU3F4_rc); m=13/13; ncol2=9; w=9; offset=3; strand=R; shift=3; score=0.412927; ---ATTwGCATA--------- ; cor=; Ncor= a 0 0 0 11117.0 168.0 885.0 4670.0 2565.0 245.0 11117.0 26.0 11117.0 0 0 0 0 0 0 0 0 0 c 0 0 0 292.0 88.0 315.0 56.0 602.0 11117.0 24.0 68.0 136.0 0 0 0 0 0 0 0 0 0 g 0 0 0 247.0 47.0 332.0 10.0 11117.0 19.0 59.0 23.0 349.0 0 0 0 0 0 0 0 0 0 t 0 0 0 705.0 11117.0 11117.0 6447.0 136.0 53.0 59.0 11117.0 941.0 0 0 0 0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
positions_7nt_m4_shift0 (positions_7nt_m4)				; positions_7nt_m4; m=0 (reference); ncol1=22; shift=0; ncol=22; cywTTgtyATGCAAATgmarry ; Alignment reference a 130 129 352 59 95 101 191 129 765 21 23 44 727 603 785 70 138 211 384 230 226 176 c 308 364 98 82 53 159 42 374 8 4 7 670 11 38 9 69 95 285 150 199 176 241 g 197 96 93 50 62 466 77 78 21 7 741 41 16 77 22 59 470 175 181 213 231 173 t 199 245 291 643 624 108 524 253 40 802 63 79 80 116 18 636 131 163 119 192 201 244
MA0142.1_shift1 (Pou5f1::Sox2)				; positions_7nt_m4 versus MA0142.1 (Pou5f1::Sox2); m=1/9; ncol2=15; w=15; offset=1; strand=D; shift=1; score=0.661009; -ywTTswyATGCAaAt------ ; cor=; Ncor= a 0 63.0 579.0 11.0 47.0 118.0 415.0 206.0 1235.0 17.0 10.0 14.0 1050.0 887.0 1200.0 198.0 0 0 0 0 0 0 c 0 846.0 58.0 50.0 12.0 363.0 18.0 365.0 30.0 5.0 16.0 1029.0 16.0 68.0 33.0 119.0 0 0 0 0 0 0 g 0 66.0 28.0 36.0 79.0 825.0 29.0 186.0 24.0 15.0 1239.0 129.0 30.0 315.0 75.0 207.0 0 0 0 0 0 0 t 0 389.0 701.0 1270.0 1231.0 63.0 907.0 612.0 80.0 1332.0 104.0 196.0 269.0 92.0 53.0 837.0 0 0 0 0 0 0
MA0507.1_rc_shift6 (POU2F2_rc)				; positions_7nt_m4 versus MA0507.1_rc (POU2F2_rc); m=2/9; ncol2=13; w=13; offset=6; strand=R; shift=6; score=0.562095; ------wyATGCAAATkmr--- ; cor=; Ncor= a 0 0 0 0 0 0 1225.0 476.0 2285.0 0.0 16.0 132.0 2287.0 2029.0 2287.0 251.0 442.0 898.0 835.0 0 0 0 c 0 0 0 0 0 0 107.0 613.0 0.0 0.0 0.0 1997.0 0.0 0.0 0.0 1.0 415.0 593.0 402.0 0 0 0 g 0 0 0 0 0 0 361.0 39.0 2.0 30.0 2271.0 0.0 0.0 2.0 0.0 19.0 825.0 266.0 635.0 0 0 0 t 0 0 0 0 0 0 594.0 1159.0 0.0 2257.0 0.0 158.0 0.0 256.0 0.0 2016.0 605.0 530.0 415.0 0 0 0
MA0627.2_shift5 (POU2F3)				; positions_7nt_m4 versus MA0627.2 (POU2F3); m=3/9; ncol2=13; w=13; offset=5; strand=D; shift=5; score=0.536272; -----watATGCAAATww---- ; cor=; Ncor= a 0 0 0 0 0 17399.0 26660.0 8522.0 54550.0 1090.0 980.0 946.0 54915.0 51382.0 55302.0 5115.0 16288.0 18907.0 0 0 0 0 c 0 0 0 0 0 11383.0 6824.0 6885.0 194.0 322.0 251.0 50288.0 80.0 567.0 164.0 3478.0 10595.0 11936.0 0 0 0 0 g 0 0 0 0 0 10722.0 8770.0 3029.0 354.0 1251.0 51971.0 1079.0 138.0 804.0 233.0 4098.0 13237.0 7941.0 0 0 0 0 t 0 0 0 0 0 16525.0 13775.0 37593.0 931.0 53366.0 2827.0 3716.0 896.0 3276.0 330.0 43338.0 15909.0 17245.0 0 0 0 0
MA0784.1_shift5 (POU1F1)				; positions_7nt_m4 versus MA0784.1 (POU1F1); m=4/9; ncol2=14; w=14; offset=5; strand=D; shift=5; score=0.518736; -----awTATGCwAATkAg--- ; cor=; Ncor= a 0 0 0 0 0 1211.0 1128.0 276.0 2128.0 45.0 28.0 98.0 1267.0 2128.0 2128.0 76.0 222.0 2128.0 736.0 0 0 0 c 0 0 0 0 0 247.0 123.0 83.0 14.0 74.0 11.0 2128.0 12.0 11.0 10.0 37.0 241.0 174.0 479.0 0 0 0 g 0 0 0 0 0 273.0 187.0 108.0 32.0 26.0 2128.0 164.0 7.0 82.0 0.0 40.0 840.0 194.0 2128.0 0 0 0 t 0 0 0 0 0 397.0 1000.0 2128.0 19.0 2128.0 176.0 536.0 861.0 85.0 3.0 2128.0 1287.0 273.0 547.0 0 0 0
MA0786.1_shift6 (POU3F1)				; positions_7nt_m4 versus MA0786.1 (POU3F1); m=5/9; ncol2=12; w=12; offset=6; strand=D; shift=6; score=0.486014; ------wTATGywAATkw---- ; cor=; Ncor= a 0 0 0 0 0 0 1034.0 505.0 2471.0 44.0 37.0 170.0 1423.0 2471.0 2471.0 259.0 382.0 1510.0 0 0 0 0 c 0 0 0 0 0 0 126.0 186.0 7.0 53.0 13.0 2471.0 1.0 103.0 20.0 95.0 302.0 478.0 0 0 0 0 g 0 0 0 0 0 0 322.0 128.0 26.0 21.0 2471.0 413.0 21.0 130.0 25.0 128.0 620.0 452.0 0 0 0 0 t 0 0 0 0 0 0 1437.0 2471.0 21.0 2471.0 232.0 1119.0 1048.0 284.0 63.0 2471.0 1167.0 961.0 0 0 0 0
MA0785.1_shift5 (POU2F1)				; positions_7nt_m4 versus MA0785.1 (POU2F1); m=6/9; ncol2=12; w=12; offset=5; strand=D; shift=5; score=0.477714; -----awTATGcwAATt----- ; cor=; Ncor= a 0 0 0 0 0 5076.0 5351.0 756.0 10582.0 153.0 186.0 300.0 6932.0 10582.0 10582.0 1422.0 1976.0 0 0 0 0 0 c 0 0 0 0 0 1938.0 1046.0 1347.0 12.0 501.0 82.0 10582.0 33.0 108.0 37.0 457.0 1840.0 0 0 0 0 0 g 0 0 0 0 0 1494.0 2142.0 474.0 29.0 213.0 10582.0 1351.0 46.0 879.0 51.0 755.0 2504.0 0 0 0 0 0 t 0 0 0 0 0 2075.0 5231.0 10582.0 43.0 10582.0 1326.0 3375.0 3651.0 787.0 158.0 10582.0 4262.0 0 0 0 0 0
MA0788.1_shift5 (POU3F3)				; positions_7nt_m4 versus MA0788.1 (POU3F3); m=7/9; ncol2=13; w=13; offset=5; strand=D; shift=5; score=0.477583; -----wwTATGCwAATtw---- ; cor=; Ncor= a 0 0 0 0 0 576.0 440.0 129.0 1078.0 25.0 22.0 28.0 506.0 1078.0 1078.0 53.0 240.0 536.0 0 0 0 0 c 0 0 0 0 0 75.0 41.0 57.0 11.0 33.0 10.0 1078.0 4.0 11.0 6.0 20.0 141.0 85.0 0 0 0 0 g 0 0 0 0 0 137.0 131.0 64.0 12.0 49.0 1078.0 118.0 1.0 77.0 15.0 12.0 237.0 115.0 0 0 0 0 t 0 0 0 0 0 290.0 637.0 1078.0 30.0 1078.0 86.0 343.0 572.0 79.0 14.0 1078.0 1078.0 542.0 0 0 0 0
MA0787.1_shift6 (POU3F2)				; positions_7nt_m4 versus MA0787.1 (POU3F2); m=8/9; ncol2=12; w=12; offset=6; strand=D; shift=6; score=0.476318; ------wTATGCwAATka---- ; cor=; Ncor= a 0 0 0 0 0 0 591.0 163.0 1292.0 28.0 19.0 68.0 688.0 1292.0 1292.0 63.0 137.0 1292.0 0 0 0 0 c 0 0 0 0 0 0 61.0 65.0 16.0 30.0 9.0 1292.0 4.0 16.0 6.0 19.0 165.0 262.0 0 0 0 0 g 0 0 0 0 0 0 171.0 40.0 25.0 12.0 1292.0 153.0 1.0 32.0 0.0 28.0 452.0 261.0 0 0 0 0 t 0 0 0 0 0 0 700.0 1292.0 0.0 1292.0 60.0 372.0 604.0 45.0 13.0 1292.0 840.0 562.0 0 0 0 0
MA1115.1_shift6 (POU5F1)				; positions_7nt_m4 versus MA1115.1 (POU5F1); m=9/9; ncol2=11; w=11; offset=6; strand=D; shift=6; score=0.476298; ------wwATGCAAAtd----- ; cor=; Ncor= a 0 0 0 0 0 0 4982.0 3603.0 12693.0 83.0 717.0 533.0 11756.0 10560.0 12280.0 2556.0 3476.0 0 0 0 0 0 c 0 0 0 0 0 0 1290.0 2785.0 122.0 130.0 192.0 10310.0 132.0 690.0 270.0 2104.0 2450.0 0 0 0 0 0 g 0 0 0 0 0 0 1996.0 1908.0 229.0 67.0 11571.0 548.0 118.0 1026.0 257.0 2071.0 3551.0 0 0 0 0 0 t 0 0 0 0 0 0 4846.0 4818.0 70.0 12834.0 634.0 1723.0 1108.0 838.0 307.0 6383.0 3637.0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
positions_7nt_m1_shift0 (positions_7nt_m1)				; positions_7nt_m1; m=0 (reference); ncol1=24; shift=0; ncol=24; kbcywTTgTtATGCAAATgvarky ; Alignment reference a 140 97 74 53 232 15 34 71 139 75 601 7 10 12 550 462 598 78 130 175 252 181 149 139 c 151 165 307 365 42 39 16 108 11 116 11 3 7 531 8 39 12 61 87 168 136 154 152 202 g 187 178 132 61 32 22 33 444 20 59 22 4 603 34 17 92 24 67 314 170 162 185 184 138 t 181 219 146 180 353 583 576 36 489 409 25 645 39 82 84 66 25 453 128 146 109 139 174 180
MA0142.1_shift3 (Pou5f1::Sox2)				; positions_7nt_m1 versus MA0142.1 (Pou5f1::Sox2); m=1/11; ncol2=15; w=15; offset=3; strand=D; shift=3; score=0.618448; ---ywTTswyATGCAaAt------ ; cor=; Ncor= a 0 0 0 63.0 579.0 11.0 47.0 118.0 415.0 206.0 1235.0 17.0 10.0 14.0 1050.0 887.0 1200.0 198.0 0 0 0 0 0 0 c 0 0 0 846.0 58.0 50.0 12.0 363.0 18.0 365.0 30.0 5.0 16.0 1029.0 16.0 68.0 33.0 119.0 0 0 0 0 0 0 g 0 0 0 66.0 28.0 36.0 79.0 825.0 29.0 186.0 24.0 15.0 1239.0 129.0 30.0 315.0 75.0 207.0 0 0 0 0 0 0 t 0 0 0 389.0 701.0 1270.0 1231.0 63.0 907.0 612.0 80.0 1332.0 104.0 196.0 269.0 92.0 53.0 837.0 0 0 0 0 0 0
MA0507.1_rc_shift8 (POU2F2_rc)				; positions_7nt_m1 versus MA0507.1_rc (POU2F2_rc); m=2/11; ncol2=13; w=13; offset=8; strand=R; shift=8; score=0.510228; --------wyATGCAAATkmr--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1225.0 476.0 2285.0 0.0 16.0 132.0 2287.0 2029.0 2287.0 251.0 442.0 898.0 835.0 0 0 0 c 0 0 0 0 0 0 0 0 107.0 613.0 0.0 0.0 0.0 1997.0 0.0 0.0 0.0 1.0 415.0 593.0 402.0 0 0 0 g 0 0 0 0 0 0 0 0 361.0 39.0 2.0 30.0 2271.0 0.0 0.0 2.0 0.0 19.0 825.0 266.0 635.0 0 0 0 t 0 0 0 0 0 0 0 0 594.0 1159.0 0.0 2257.0 0.0 158.0 0.0 256.0 0.0 2016.0 605.0 530.0 415.0 0 0 0
MA0627.2_shift7 (POU2F3)				; positions_7nt_m1 versus MA0627.2 (POU2F3); m=3/11; ncol2=13; w=13; offset=7; strand=D; shift=7; score=0.492181; -------watATGCAAATww---- ; cor=; Ncor= a 0 0 0 0 0 0 0 17399.0 26660.0 8522.0 54550.0 1090.0 980.0 946.0 54915.0 51382.0 55302.0 5115.0 16288.0 18907.0 0 0 0 0 c 0 0 0 0 0 0 0 11383.0 6824.0 6885.0 194.0 322.0 251.0 50288.0 80.0 567.0 164.0 3478.0 10595.0 11936.0 0 0 0 0 g 0 0 0 0 0 0 0 10722.0 8770.0 3029.0 354.0 1251.0 51971.0 1079.0 138.0 804.0 233.0 4098.0 13237.0 7941.0 0 0 0 0 t 0 0 0 0 0 0 0 16525.0 13775.0 37593.0 931.0 53366.0 2827.0 3716.0 896.0 3276.0 330.0 43338.0 15909.0 17245.0 0 0 0 0
MA0784.1_shift7 (POU1F1)				; positions_7nt_m1 versus MA0784.1 (POU1F1); m=4/11; ncol2=14; w=14; offset=7; strand=D; shift=7; score=0.492016; -------awTATGCwAATkAg--- ; cor=; Ncor= a 0 0 0 0 0 0 0 1211.0 1128.0 276.0 2128.0 45.0 28.0 98.0 1267.0 2128.0 2128.0 76.0 222.0 2128.0 736.0 0 0 0 c 0 0 0 0 0 0 0 247.0 123.0 83.0 14.0 74.0 11.0 2128.0 12.0 11.0 10.0 37.0 241.0 174.0 479.0 0 0 0 g 0 0 0 0 0 0 0 273.0 187.0 108.0 32.0 26.0 2128.0 164.0 7.0 82.0 0.0 40.0 840.0 194.0 2128.0 0 0 0 t 0 0 0 0 0 0 0 397.0 1000.0 2128.0 19.0 2128.0 176.0 536.0 861.0 85.0 3.0 2128.0 1287.0 273.0 547.0 0 0 0
MA0786.1_shift8 (POU3F1)				; positions_7nt_m1 versus MA0786.1 (POU3F1); m=5/11; ncol2=12; w=12; offset=8; strand=D; shift=8; score=0.466141; --------wTATGywAATkw---- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1034.0 505.0 2471.0 44.0 37.0 170.0 1423.0 2471.0 2471.0 259.0 382.0 1510.0 0 0 0 0 c 0 0 0 0 0 0 0 0 126.0 186.0 7.0 53.0 13.0 2471.0 1.0 103.0 20.0 95.0 302.0 478.0 0 0 0 0 g 0 0 0 0 0 0 0 0 322.0 128.0 26.0 21.0 2471.0 413.0 21.0 130.0 25.0 128.0 620.0 452.0 0 0 0 0 t 0 0 0 0 0 0 0 0 1437.0 2471.0 21.0 2471.0 232.0 1119.0 1048.0 284.0 63.0 2471.0 1167.0 961.0 0 0 0 0
MA0787.1_shift8 (POU3F2)				; positions_7nt_m1 versus MA0787.1 (POU3F2); m=6/11; ncol2=12; w=12; offset=8; strand=D; shift=8; score=0.457472; --------wTATGCwAATka---- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 591.0 163.0 1292.0 28.0 19.0 68.0 688.0 1292.0 1292.0 63.0 137.0 1292.0 0 0 0 0 c 0 0 0 0 0 0 0 0 61.0 65.0 16.0 30.0 9.0 1292.0 4.0 16.0 6.0 19.0 165.0 262.0 0 0 0 0 g 0 0 0 0 0 0 0 0 171.0 40.0 25.0 12.0 1292.0 153.0 1.0 32.0 0.0 28.0 452.0 261.0 0 0 0 0 t 0 0 0 0 0 0 0 0 700.0 1292.0 0.0 1292.0 60.0 372.0 604.0 45.0 13.0 1292.0 840.0 562.0 0 0 0 0
MA0788.1_shift7 (POU3F3)				; positions_7nt_m1 versus MA0788.1 (POU3F3); m=7/11; ncol2=13; w=13; offset=7; strand=D; shift=7; score=0.456491; -------wwTATGCwAATtw---- ; cor=; Ncor= a 0 0 0 0 0 0 0 576.0 440.0 129.0 1078.0 25.0 22.0 28.0 506.0 1078.0 1078.0 53.0 240.0 536.0 0 0 0 0 c 0 0 0 0 0 0 0 75.0 41.0 57.0 11.0 33.0 10.0 1078.0 4.0 11.0 6.0 20.0 141.0 85.0 0 0 0 0 g 0 0 0 0 0 0 0 137.0 131.0 64.0 12.0 49.0 1078.0 118.0 1.0 77.0 15.0 12.0 237.0 115.0 0 0 0 0 t 0 0 0 0 0 0 0 290.0 637.0 1078.0 30.0 1078.0 86.0 343.0 572.0 79.0 14.0 1078.0 1078.0 542.0 0 0 0 0
MA0785.1_shift7 (POU2F1)				; positions_7nt_m1 versus MA0785.1 (POU2F1); m=8/11; ncol2=12; w=12; offset=7; strand=D; shift=7; score=0.44888; -------awTATGcwAATt----- ; cor=; Ncor= a 0 0 0 0 0 0 0 5076.0 5351.0 756.0 10582.0 153.0 186.0 300.0 6932.0 10582.0 10582.0 1422.0 1976.0 0 0 0 0 0 c 0 0 0 0 0 0 0 1938.0 1046.0 1347.0 12.0 501.0 82.0 10582.0 33.0 108.0 37.0 457.0 1840.0 0 0 0 0 0 g 0 0 0 0 0 0 0 1494.0 2142.0 474.0 29.0 213.0 10582.0 1351.0 46.0 879.0 51.0 755.0 2504.0 0 0 0 0 0 t 0 0 0 0 0 0 0 2075.0 5231.0 10582.0 43.0 10582.0 1326.0 3375.0 3651.0 787.0 158.0 10582.0 4262.0 0 0 0 0 0
MA1115.1_shift8 (POU5F1)				; positions_7nt_m1 versus MA1115.1 (POU5F1); m=9/11; ncol2=11; w=11; offset=8; strand=D; shift=8; score=0.436002; --------wwATGCAAAtd----- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 4982.0 3603.0 12693.0 83.0 717.0 533.0 11756.0 10560.0 12280.0 2556.0 3476.0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 1290.0 2785.0 122.0 130.0 192.0 10310.0 132.0 690.0 270.0 2104.0 2450.0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 1996.0 1908.0 229.0 67.0 11571.0 548.0 118.0 1026.0 257.0 2071.0 3551.0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 4846.0 4818.0 70.0 12834.0 634.0 1723.0 1108.0 838.0 307.0 6383.0 3637.0 0 0 0 0 0
MA0043.3_shift5 (HLF)				; positions_7nt_m1 versus MA0043.3 (HLF); m=10/11; ncol2=14; w=14; offset=5; strand=D; shift=5; score=0.428546; -----wdrTTATGYAAymw----- ; cor=; Ncor= a 0 0 0 0 0 6810.0 6191.0 8789.0 295.0 162.0 22746.0 197.0 2418.0 369.0 24156.0 24055.0 1399.0 8897.0 6902.0 0 0 0 0 0 c 0 0 0 0 0 5063.0 4009.0 4432.0 242.0 96.0 125.0 1548.0 112.0 17203.0 122.0 67.0 13237.0 6412.0 5267.0 0 0 0 0 0 g 0 0 0 0 0 5626.0 6297.0 9793.0 148.0 895.0 1344.0 253.0 21705.0 199.0 48.0 189.0 3300.0 3218.0 5523.0 0 0 0 0 0 t 0 0 0 0 0 6925.0 7927.0 1410.0 23739.0 23271.0 209.0 22426.0 189.0 6653.0 98.0 113.0 6488.0 5897.0 6732.0 0 0 0 0 0
MA0025.2_shift6 (NFIL3)				; positions_7nt_m1 versus MA0025.2 (NFIL3); m=11/11; ncol2=13; w=13; offset=6; strand=D; shift=6; score=0.40591; ------wrTTATGyAAtaw----- ; cor=; Ncor= a 0 0 0 0 0 0 6368.0 9041.0 870.0 468.0 21353.0 659.0 1460.0 1358.0 21848.0 21911.0 2193.0 7671.0 6692.0 0 0 0 0 0 c 0 0 0 0 0 0 3904.0 3896.0 681.0 208.0 220.0 1511.0 467.0 12004.0 543.0 251.0 4959.0 5630.0 4929.0 0 0 0 0 0 g 0 0 0 0 0 0 5615.0 7261.0 518.0 1714.0 990.0 492.0 20459.0 454.0 171.0 360.0 2701.0 4152.0 4482.0 0 0 0 0 0 t 0 0 0 0 0 0 7109.0 2798.0 20927.0 20606.0 433.0 20334.0 610.0 9180.0 434.0 474.0 13143.0 5543.0 6893.0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
positions_6nt_m2_shift0 (positions_6nt_m2)				; positions_6nt_m2; m=0 (reference); ncol1=24; shift=0; ncol=24; tataTGCATwTGCATAwsaawrkr ; Alignment reference a 73 107 44 218 15 26 23 309 18 134 24 25 33 315 23 232 155 70 159 195 86 95 85 112 c 81 70 61 40 29 35 271 8 24 29 13 19 273 3 16 20 45 124 68 48 68 52 73 79 g 79 84 22 37 23 233 14 13 20 32 3 277 11 12 20 56 38 95 42 54 50 131 94 88 t 108 80 214 46 274 47 33 11 279 146 301 20 24 11 282 33 103 52 72 44 137 63 89 62
MA0142.1_rc_shift7 (Pou5f1::Sox2_rc)				; positions_6nt_m2 versus MA0142.1_rc (Pou5f1::Sox2_rc); m=1/8; ncol2=15; w=15; offset=7; strand=R; shift=7; score=0.553918; -------aTtTGCATrwsAAwr-- ; cor=; Ncor= a 0 0 0 0 0 0 0 837.0 53.0 92.0 269.0 196.0 104.0 1332.0 80.0 612.0 907.0 63.0 1231.0 1270.0 701.0 389.0 0 0 c 0 0 0 0 0 0 0 207.0 75.0 315.0 30.0 129.0 1239.0 15.0 24.0 186.0 29.0 825.0 79.0 36.0 28.0 66.0 0 0 g 0 0 0 0 0 0 0 119.0 33.0 68.0 16.0 1029.0 16.0 5.0 30.0 365.0 18.0 363.0 12.0 50.0 58.0 846.0 0 0 t 0 0 0 0 0 0 0 198.0 1200.0 887.0 1050.0 14.0 10.0 17.0 1235.0 206.0 415.0 118.0 47.0 11.0 579.0 63.0 0 0
MA0507.1_shift4 (POU2F2)				; positions_6nt_m2 versus MA0507.1 (POU2F2); m=2/8; ncol2=13; w=13; offset=4; strand=D; shift=4; score=0.470023; ----ykmATTTGCATrw------- ; cor=; Ncor= a 0 0 0 0 415.0 530.0 605.0 2016.0 0.0 256.0 0.0 158.0 0.0 2257.0 0.0 1159.0 594.0 0 0 0 0 0 0 0 c 0 0 0 0 635.0 266.0 825.0 19.0 0.0 2.0 0.0 0.0 2271.0 30.0 2.0 39.0 361.0 0 0 0 0 0 0 0 g 0 0 0 0 402.0 593.0 415.0 1.0 0.0 0.0 0.0 1997.0 0.0 0.0 0.0 613.0 107.0 0 0 0 0 0 0 0 t 0 0 0 0 835.0 898.0 442.0 251.0 2287.0 2029.0 2287.0 132.0 16.0 0.0 2285.0 476.0 1225.0 0 0 0 0 0 0 0
MA0627.2_rc_shift5 (POU2F3_rc)				; positions_6nt_m2 versus MA0627.2_rc (POU2F3_rc); m=3/8; ncol2=13; w=13; offset=5; strand=R; shift=5; score=0.466654; -----wwATTTGCATatw------ ; cor=; Ncor= a 0 0 0 0 0 17245.0 15909.0 43338.0 330.0 3276.0 896.0 3716.0 2827.0 53366.0 931.0 37593.0 13775.0 16525.0 0 0 0 0 0 0 c 0 0 0 0 0 7941.0 13237.0 4098.0 233.0 804.0 138.0 1079.0 51971.0 1251.0 354.0 3029.0 8770.0 10722.0 0 0 0 0 0 0 g 0 0 0 0 0 11936.0 10595.0 3478.0 164.0 567.0 80.0 50288.0 251.0 322.0 194.0 6885.0 6824.0 11383.0 0 0 0 0 0 0 t 0 0 0 0 0 18907.0 16288.0 5115.0 55302.0 51382.0 54915.0 946.0 980.0 1090.0 54550.0 8522.0 26660.0 17399.0 0 0 0 0 0 0
MA0785.1_rc_shift6 (POU2F1_rc)				; positions_6nt_m2 versus MA0785.1_rc (POU2F1_rc); m=4/8; ncol2=12; w=12; offset=6; strand=R; shift=6; score=0.431729; ------aATTwgCATAwt------ ; cor=; Ncor= a 0 0 0 0 0 0 4262.0 10582.0 158.0 787.0 3651.0 3375.0 1326.0 10582.0 43.0 10582.0 5231.0 2075.0 0 0 0 0 0 0 c 0 0 0 0 0 0 2504.0 755.0 51.0 879.0 46.0 1351.0 10582.0 213.0 29.0 474.0 2142.0 1494.0 0 0 0 0 0 0 g 0 0 0 0 0 0 1840.0 457.0 37.0 108.0 33.0 10582.0 82.0 501.0 12.0 1347.0 1046.0 1938.0 0 0 0 0 0 0 t 0 0 0 0 0 0 1976.0 1422.0 10582.0 10582.0 6932.0 300.0 186.0 153.0 10582.0 756.0 5351.0 5076.0 0 0 0 0 0 0
MA0784.1_rc_shift4 (POU1F1_rc)				; positions_6nt_m2 versus MA0784.1_rc (POU1F1_rc); m=5/8; ncol2=14; w=14; offset=4; strand=R; shift=4; score=0.431338; ----cTmATTwGCATAwt------ ; cor=; Ncor= a 0 0 0 0 547.0 273.0 1287.0 2128.0 3.0 85.0 861.0 536.0 176.0 2128.0 19.0 2128.0 1000.0 397.0 0 0 0 0 0 0 c 0 0 0 0 2128.0 194.0 840.0 40.0 0.0 82.0 7.0 164.0 2128.0 26.0 32.0 108.0 187.0 273.0 0 0 0 0 0 0 g 0 0 0 0 479.0 174.0 241.0 37.0 10.0 11.0 12.0 2128.0 11.0 74.0 14.0 83.0 123.0 247.0 0 0 0 0 0 0 t 0 0 0 0 736.0 2128.0 222.0 76.0 2128.0 2128.0 1267.0 98.0 28.0 45.0 2128.0 276.0 1128.0 1211.0 0 0 0 0 0 0
MA0786.1_rc_shift5 (POU3F1_rc)				; positions_6nt_m2 versus MA0786.1_rc (POU3F1_rc); m=6/8; ncol2=12; w=12; offset=5; strand=R; shift=5; score=0.413135; -----wmATTwrCATAw------- ; cor=; Ncor= a 0 0 0 0 0 961.0 1167.0 2471.0 63.0 284.0 1048.0 1119.0 232.0 2471.0 21.0 2471.0 1437.0 0 0 0 0 0 0 0 c 0 0 0 0 0 452.0 620.0 128.0 25.0 130.0 21.0 413.0 2471.0 21.0 26.0 128.0 322.0 0 0 0 0 0 0 0 g 0 0 0 0 0 478.0 302.0 95.0 20.0 103.0 1.0 2471.0 13.0 53.0 7.0 186.0 126.0 0 0 0 0 0 0 0 t 0 0 0 0 0 1510.0 382.0 259.0 2471.0 2471.0 1423.0 170.0 37.0 44.0 2471.0 505.0 1034.0 0 0 0 0 0 0 0
MA0788.1_rc_shift5 (POU3F3_rc)				; positions_6nt_m2 versus MA0788.1_rc (POU3F3_rc); m=7/8; ncol2=13; w=13; offset=5; strand=R; shift=5; score=0.406651; -----waATTwGCATAww------ ; cor=; Ncor= a 0 0 0 0 0 542.0 1078.0 1078.0 14.0 79.0 572.0 343.0 86.0 1078.0 30.0 1078.0 637.0 290.0 0 0 0 0 0 0 c 0 0 0 0 0 115.0 237.0 12.0 15.0 77.0 1.0 118.0 1078.0 49.0 12.0 64.0 131.0 137.0 0 0 0 0 0 0 g 0 0 0 0 0 85.0 141.0 20.0 6.0 11.0 4.0 1078.0 10.0 33.0 11.0 57.0 41.0 75.0 0 0 0 0 0 0 t 0 0 0 0 0 536.0 240.0 53.0 1078.0 1078.0 506.0 28.0 22.0 25.0 1078.0 129.0 440.0 576.0 0 0 0 0 0 0
MA0787.1_rc_shift5 (POU3F2_rc)				; positions_6nt_m2 versus MA0787.1_rc (POU3F2_rc); m=8/8; ncol2=12; w=12; offset=5; strand=R; shift=5; score=0.406512; -----tmATTwGCATAw------- ; cor=; Ncor= a 0 0 0 0 0 562.0 840.0 1292.0 13.0 45.0 604.0 372.0 60.0 1292.0 0.0 1292.0 700.0 0 0 0 0 0 0 0 c 0 0 0 0 0 261.0 452.0 28.0 0.0 32.0 1.0 153.0 1292.0 12.0 25.0 40.0 171.0 0 0 0 0 0 0 0 g 0 0 0 0 0 262.0 165.0 19.0 6.0 16.0 4.0 1292.0 9.0 30.0 16.0 65.0 61.0 0 0 0 0 0 0 0 t 0 0 0 0 0 1292.0 137.0 63.0 1292.0 1292.0 688.0 68.0 19.0 28.0 1292.0 163.0 591.0 0 0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv3_m1_shift0 (oligos_6nt_mkv3_m1)				; oligos_6nt_mkv3_m1; m=0 (reference); ncol1=22; shift=0; ncol=22; yryaTwTGCATATGCAwAtryr ; Alignment reference a 86 142 55 241 36 111 17 47 27 397 25 375 20 20 76 370 226 296 59 148 97 131 c 118 78 162 80 88 35 40 16 362 5 21 13 12 25 295 7 62 14 54 69 117 99 g 99 117 69 54 14 62 7 295 25 12 13 21 5 362 16 40 35 88 80 162 78 118 t 131 97 148 59 296 226 370 76 20 20 375 25 397 27 47 17 111 36 241 55 142 86
MA0507.1_shift0 (POU2F2)				; oligos_6nt_mkv3_m1 versus MA0507.1 (POU2F2); m=1/9; ncol2=13; w=13; offset=0; strand=D; shift=0; score=0.52948; ykmATTTGCATrw--------- ; cor=; Ncor= a 415.0 530.0 605.0 2016.0 0.0 256.0 0.0 158.0 0.0 2257.0 0.0 1159.0 594.0 0 0 0 0 0 0 0 0 0 c 635.0 266.0 825.0 19.0 0.0 2.0 0.0 0.0 2271.0 30.0 2.0 39.0 361.0 0 0 0 0 0 0 0 0 0 g 402.0 593.0 415.0 1.0 0.0 0.0 0.0 1997.0 0.0 0.0 0.0 613.0 107.0 0 0 0 0 0 0 0 0 0 t 835.0 898.0 442.0 251.0 2287.0 2029.0 2287.0 132.0 16.0 0.0 2285.0 476.0 1225.0 0 0 0 0 0 0 0 0 0
MA0627.2_shift8 (POU2F3)				; oligos_6nt_mkv3_m1 versus MA0627.2 (POU2F3); m=2/9; ncol2=13; w=13; offset=8; strand=D; shift=8; score=0.503198; --------watATGCAAATww- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 17399.0 26660.0 8522.0 54550.0 1090.0 980.0 946.0 54915.0 51382.0 55302.0 5115.0 16288.0 18907.0 0 c 0 0 0 0 0 0 0 0 11383.0 6824.0 6885.0 194.0 322.0 251.0 50288.0 80.0 567.0 164.0 3478.0 10595.0 11936.0 0 g 0 0 0 0 0 0 0 0 10722.0 8770.0 3029.0 354.0 1251.0 51971.0 1079.0 138.0 804.0 233.0 4098.0 13237.0 7941.0 0 t 0 0 0 0 0 0 0 0 16525.0 13775.0 37593.0 931.0 53366.0 2827.0 3716.0 896.0 3276.0 330.0 43338.0 15909.0 17245.0 0
MA0142.1_rc_shift3 (Pou5f1::Sox2_rc)				; oligos_6nt_mkv3_m1 versus MA0142.1_rc (Pou5f1::Sox2_rc); m=3/9; ncol2=15; w=15; offset=3; strand=R; shift=3; score=0.487543; ---aTtTGCATrwsAAwr---- ; cor=; Ncor= a 0 0 0 837.0 53.0 92.0 269.0 196.0 104.0 1332.0 80.0 612.0 907.0 63.0 1231.0 1270.0 701.0 389.0 0 0 0 0 c 0 0 0 207.0 75.0 315.0 30.0 129.0 1239.0 15.0 24.0 186.0 29.0 825.0 79.0 36.0 28.0 66.0 0 0 0 0 g 0 0 0 119.0 33.0 68.0 16.0 1029.0 16.0 5.0 30.0 365.0 18.0 363.0 12.0 50.0 58.0 846.0 0 0 0 0 t 0 0 0 198.0 1200.0 887.0 1050.0 14.0 10.0 17.0 1235.0 206.0 415.0 118.0 47.0 11.0 579.0 63.0 0 0 0 0
MA0784.1_rc_shift0 (POU1F1_rc)				; oligos_6nt_mkv3_m1 versus MA0784.1_rc (POU1F1_rc); m=4/9; ncol2=14; w=14; offset=0; strand=R; shift=0; score=0.472069; cTmATTwGCATAwt-------- ; cor=; Ncor= a 547.0 273.0 1287.0 2128.0 3.0 85.0 861.0 536.0 176.0 2128.0 19.0 2128.0 1000.0 397.0 0 0 0 0 0 0 0 0 c 2128.0 194.0 840.0 40.0 0.0 82.0 7.0 164.0 2128.0 26.0 32.0 108.0 187.0 273.0 0 0 0 0 0 0 0 0 g 479.0 174.0 241.0 37.0 10.0 11.0 12.0 2128.0 11.0 74.0 14.0 83.0 123.0 247.0 0 0 0 0 0 0 0 0 t 736.0 2128.0 222.0 76.0 2128.0 2128.0 1267.0 98.0 28.0 45.0 2128.0 276.0 1128.0 1211.0 0 0 0 0 0 0 0 0
MA0786.1_shift9 (POU3F1)				; oligos_6nt_mkv3_m1 versus MA0786.1 (POU3F1); m=5/9; ncol2=12; w=12; offset=9; strand=D; shift=9; score=0.45305; ---------wTATGywAATkw- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 1034.0 505.0 2471.0 44.0 37.0 170.0 1423.0 2471.0 2471.0 259.0 382.0 1510.0 0 c 0 0 0 0 0 0 0 0 0 126.0 186.0 7.0 53.0 13.0 2471.0 1.0 103.0 20.0 95.0 302.0 478.0 0 g 0 0 0 0 0 0 0 0 0 322.0 128.0 26.0 21.0 2471.0 413.0 21.0 130.0 25.0 128.0 620.0 452.0 0 t 0 0 0 0 0 0 0 0 0 1437.0 2471.0 21.0 2471.0 232.0 1119.0 1048.0 284.0 63.0 2471.0 1167.0 961.0 0
MA0787.1_shift9 (POU3F2)				; oligos_6nt_mkv3_m1 versus MA0787.1 (POU3F2); m=6/9; ncol2=12; w=12; offset=9; strand=D; shift=9; score=0.446048; ---------wTATGCwAATka- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 591.0 163.0 1292.0 28.0 19.0 68.0 688.0 1292.0 1292.0 63.0 137.0 1292.0 0 c 0 0 0 0 0 0 0 0 0 61.0 65.0 16.0 30.0 9.0 1292.0 4.0 16.0 6.0 19.0 165.0 262.0 0 g 0 0 0 0 0 0 0 0 0 171.0 40.0 25.0 12.0 1292.0 153.0 1.0 32.0 0.0 28.0 452.0 261.0 0 t 0 0 0 0 0 0 0 0 0 700.0 1292.0 0.0 1292.0 60.0 372.0 604.0 45.0 13.0 1292.0 840.0 562.0 0
MA0785.1_shift8 (POU2F1)				; oligos_6nt_mkv3_m1 versus MA0785.1 (POU2F1); m=7/9; ncol2=12; w=12; offset=8; strand=D; shift=8; score=0.43914; --------awTATGcwAATt-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 5076.0 5351.0 756.0 10582.0 153.0 186.0 300.0 6932.0 10582.0 10582.0 1422.0 1976.0 0 0 c 0 0 0 0 0 0 0 0 1938.0 1046.0 1347.0 12.0 501.0 82.0 10582.0 33.0 108.0 37.0 457.0 1840.0 0 0 g 0 0 0 0 0 0 0 0 1494.0 2142.0 474.0 29.0 213.0 10582.0 1351.0 46.0 879.0 51.0 755.0 2504.0 0 0 t 0 0 0 0 0 0 0 0 2075.0 5231.0 10582.0 43.0 10582.0 1326.0 3375.0 3651.0 787.0 158.0 10582.0 4262.0 0 0
MA1115.1_shift9 (POU5F1)				; oligos_6nt_mkv3_m1 versus MA1115.1 (POU5F1); m=8/9; ncol2=11; w=11; offset=9; strand=D; shift=9; score=0.432052; ---------wwATGCAAAtd-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 4982.0 3603.0 12693.0 83.0 717.0 533.0 11756.0 10560.0 12280.0 2556.0 3476.0 0 0 c 0 0 0 0 0 0 0 0 0 1290.0 2785.0 122.0 130.0 192.0 10310.0 132.0 690.0 270.0 2104.0 2450.0 0 0 g 0 0 0 0 0 0 0 0 0 1996.0 1908.0 229.0 67.0 11571.0 548.0 118.0 1026.0 257.0 2071.0 3551.0 0 0 t 0 0 0 0 0 0 0 0 0 4846.0 4818.0 70.0 12834.0 634.0 1723.0 1108.0 838.0 307.0 6383.0 3637.0 0 0
MA0788.1_shift8 (POU3F3)				; oligos_6nt_mkv3_m1 versus MA0788.1 (POU3F3); m=9/9; ncol2=13; w=13; offset=8; strand=D; shift=8; score=0.419029; --------wwTATGCwAATtw- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 576.0 440.0 129.0 1078.0 25.0 22.0 28.0 506.0 1078.0 1078.0 53.0 240.0 536.0 0 c 0 0 0 0 0 0 0 0 75.0 41.0 57.0 11.0 33.0 10.0 1078.0 4.0 11.0 6.0 20.0 141.0 85.0 0 g 0 0 0 0 0 0 0 0 137.0 131.0 64.0 12.0 49.0 1078.0 118.0 1.0 77.0 15.0 12.0 237.0 115.0 0 t 0 0 0 0 0 0 0 0 290.0 637.0 1078.0 30.0 1078.0 86.0 343.0 572.0 79.0 14.0 1078.0 1078.0 542.0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
positions_7nt_m2_shift0 (positions_7nt_m2)				; positions_7nt_m2; m=0 (reference); ncol1=24; shift=0; ncol=24; ydyaTtTgCATATGcAaAtryayr ; Alignment reference a 40 70 21 155 10 55 10 27 16 218 11 204 15 18 47 212 134 186 26 63 55 103 34 78 c 70 38 126 39 38 20 21 5 200 4 18 6 10 12 160 3 33 6 20 31 91 44 77 48 g 47 72 29 19 9 31 4 163 11 7 7 18 2 202 5 20 16 38 43 129 31 58 58 63 t 85 62 66 29 185 136 207 47 15 13 206 14 215 10 30 7 59 12 153 19 65 37 73 53
MA0507.1_shift0 (POU2F2)				; positions_7nt_m2 versus MA0507.1 (POU2F2); m=1/8; ncol2=13; w=13; offset=0; strand=D; shift=0; score=0.496439; ykmATTTGCATrw----------- ; cor=; Ncor= a 415.0 530.0 605.0 2016.0 0.0 256.0 0.0 158.0 0.0 2257.0 0.0 1159.0 594.0 0 0 0 0 0 0 0 0 0 0 0 c 635.0 266.0 825.0 19.0 0.0 2.0 0.0 0.0 2271.0 30.0 2.0 39.0 361.0 0 0 0 0 0 0 0 0 0 0 0 g 402.0 593.0 415.0 1.0 0.0 0.0 0.0 1997.0 0.0 0.0 0.0 613.0 107.0 0 0 0 0 0 0 0 0 0 0 0 t 835.0 898.0 442.0 251.0 2287.0 2029.0 2287.0 132.0 16.0 0.0 2285.0 476.0 1225.0 0 0 0 0 0 0 0 0 0 0 0
MA0627.2_rc_shift1 (POU2F3_rc)				; positions_7nt_m2 versus MA0627.2_rc (POU2F3_rc); m=2/8; ncol2=13; w=13; offset=1; strand=R; shift=1; score=0.467354; -wwATTTGCATatw---------- ; cor=; Ncor= a 0 17245.0 15909.0 43338.0 330.0 3276.0 896.0 3716.0 2827.0 53366.0 931.0 37593.0 13775.0 16525.0 0 0 0 0 0 0 0 0 0 0 c 0 7941.0 13237.0 4098.0 233.0 804.0 138.0 1079.0 51971.0 1251.0 354.0 3029.0 8770.0 10722.0 0 0 0 0 0 0 0 0 0 0 g 0 11936.0 10595.0 3478.0 164.0 567.0 80.0 50288.0 251.0 322.0 194.0 6885.0 6824.0 11383.0 0 0 0 0 0 0 0 0 0 0 t 0 18907.0 16288.0 5115.0 55302.0 51382.0 54915.0 946.0 980.0 1090.0 54550.0 8522.0 26660.0 17399.0 0 0 0 0 0 0 0 0 0 0
MA0142.1_rc_shift3 (Pou5f1::Sox2_rc)				; positions_7nt_m2 versus MA0142.1_rc (Pou5f1::Sox2_rc); m=3/8; ncol2=15; w=15; offset=3; strand=R; shift=3; score=0.453157; ---aTtTGCATrwsAAwr------ ; cor=; Ncor= a 0 0 0 837.0 53.0 92.0 269.0 196.0 104.0 1332.0 80.0 612.0 907.0 63.0 1231.0 1270.0 701.0 389.0 0 0 0 0 0 0 c 0 0 0 207.0 75.0 315.0 30.0 129.0 1239.0 15.0 24.0 186.0 29.0 825.0 79.0 36.0 28.0 66.0 0 0 0 0 0 0 g 0 0 0 119.0 33.0 68.0 16.0 1029.0 16.0 5.0 30.0 365.0 18.0 363.0 12.0 50.0 58.0 846.0 0 0 0 0 0 0 t 0 0 0 198.0 1200.0 887.0 1050.0 14.0 10.0 17.0 1235.0 206.0 415.0 118.0 47.0 11.0 579.0 63.0 0 0 0 0 0 0
MA0784.1_rc_shift0 (POU1F1_rc)				; positions_7nt_m2 versus MA0784.1_rc (POU1F1_rc); m=4/8; ncol2=14; w=14; offset=0; strand=R; shift=0; score=0.445991; cTmATTwGCATAwt---------- ; cor=; Ncor= a 547.0 273.0 1287.0 2128.0 3.0 85.0 861.0 536.0 176.0 2128.0 19.0 2128.0 1000.0 397.0 0 0 0 0 0 0 0 0 0 0 c 2128.0 194.0 840.0 40.0 0.0 82.0 7.0 164.0 2128.0 26.0 32.0 108.0 187.0 273.0 0 0 0 0 0 0 0 0 0 0 g 479.0 174.0 241.0 37.0 10.0 11.0 12.0 2128.0 11.0 74.0 14.0 83.0 123.0 247.0 0 0 0 0 0 0 0 0 0 0 t 736.0 2128.0 222.0 76.0 2128.0 2128.0 1267.0 98.0 28.0 45.0 2128.0 276.0 1128.0 1211.0 0 0 0 0 0 0 0 0 0 0
MA0786.1_rc_shift1 (POU3F1_rc)				; positions_7nt_m2 versus MA0786.1_rc (POU3F1_rc); m=5/8; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.423591; -wmATTwrCATAw----------- ; cor=; Ncor= a 0 961.0 1167.0 2471.0 63.0 284.0 1048.0 1119.0 232.0 2471.0 21.0 2471.0 1437.0 0 0 0 0 0 0 0 0 0 0 0 c 0 452.0 620.0 128.0 25.0 130.0 21.0 413.0 2471.0 21.0 26.0 128.0 322.0 0 0 0 0 0 0 0 0 0 0 0 g 0 478.0 302.0 95.0 20.0 103.0 1.0 2471.0 13.0 53.0 7.0 186.0 126.0 0 0 0 0 0 0 0 0 0 0 0 t 0 1510.0 382.0 259.0 2471.0 2471.0 1423.0 170.0 37.0 44.0 2471.0 505.0 1034.0 0 0 0 0 0 0 0 0 0 0 0
MA0787.1_rc_shift1 (POU3F2_rc)				; positions_7nt_m2 versus MA0787.1_rc (POU3F2_rc); m=6/8; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.419217; -tmATTwGCATAw----------- ; cor=; Ncor= a 0 562.0 840.0 1292.0 13.0 45.0 604.0 372.0 60.0 1292.0 0.0 1292.0 700.0 0 0 0 0 0 0 0 0 0 0 0 c 0 261.0 452.0 28.0 0.0 32.0 1.0 153.0 1292.0 12.0 25.0 40.0 171.0 0 0 0 0 0 0 0 0 0 0 0 g 0 262.0 165.0 19.0 6.0 16.0 4.0 1292.0 9.0 30.0 16.0 65.0 61.0 0 0 0 0 0 0 0 0 0 0 0 t 0 1292.0 137.0 63.0 1292.0 1292.0 688.0 68.0 19.0 28.0 1292.0 163.0 591.0 0 0 0 0 0 0 0 0 0 0 0
MA0785.1_rc_shift2 (POU2F1_rc)				; positions_7nt_m2 versus MA0785.1_rc (POU2F1_rc); m=7/8; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.409191; --aATTwgCATAwt---------- ; cor=; Ncor= a 0 0 4262.0 10582.0 158.0 787.0 3651.0 3375.0 1326.0 10582.0 43.0 10582.0 5231.0 2075.0 0 0 0 0 0 0 0 0 0 0 c 0 0 2504.0 755.0 51.0 879.0 46.0 1351.0 10582.0 213.0 29.0 474.0 2142.0 1494.0 0 0 0 0 0 0 0 0 0 0 g 0 0 1840.0 457.0 37.0 108.0 33.0 10582.0 82.0 501.0 12.0 1347.0 1046.0 1938.0 0 0 0 0 0 0 0 0 0 0 t 0 0 1976.0 1422.0 10582.0 10582.0 6932.0 300.0 186.0 153.0 10582.0 756.0 5351.0 5076.0 0 0 0 0 0 0 0 0 0 0
MA1115.1_rc_shift2 (POU5F1_rc)				; positions_7nt_m2 versus MA1115.1_rc (POU5F1_rc); m=8/8; ncol2=11; w=11; offset=2; strand=R; shift=2; score=0.40003; --haTTTGCATww----------- ; cor=; Ncor= a 0 0 3637.0 6383.0 307.0 838.0 1108.0 1723.0 634.0 12834.0 70.0 4818.0 4846.0 0 0 0 0 0 0 0 0 0 0 0 c 0 0 3551.0 2071.0 257.0 1026.0 118.0 548.0 11571.0 67.0 229.0 1908.0 1996.0 0 0 0 0 0 0 0 0 0 0 0 g 0 0 2450.0 2104.0 270.0 690.0 132.0 10310.0 192.0 130.0 122.0 2785.0 1290.0 0 0 0 0 0 0 0 0 0 0 0 t 0 0 3476.0 2556.0 12280.0 10560.0 11756.0 533.0 717.0 83.0 12693.0 3603.0 4982.0 0 0 0 0 0 0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
positions_7nt_m5_shift0 (positions_7nt_m5)				; positions_7nt_m5; m=0 (reference); ncol1=24; shift=0; ncol=24; gyrtatgygCATATGCAaATryry ; Alignment reference a 76 47 141 24 194 34 68 21 60 29 273 10 272 11 16 19 247 156 248 27 89 74 117 62 c 60 105 43 67 36 50 30 152 19 225 7 29 8 15 14 261 14 64 11 34 26 83 49 110 g 124 78 79 34 49 19 166 18 191 37 17 8 23 7 264 7 45 26 40 31 174 54 98 56 t 55 85 52 190 36 212 51 124 45 24 18 268 12 282 21 28 9 69 16 223 26 104 51 87
MA0507.1_rc_shift10 (POU2F2_rc)				; positions_7nt_m5 versus MA0507.1_rc (POU2F2_rc); m=1/7; ncol2=13; w=13; offset=10; strand=R; shift=10; score=0.495057; ----------wyATGCAAATkmr- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 1225.0 476.0 2285.0 0.0 16.0 132.0 2287.0 2029.0 2287.0 251.0 442.0 898.0 835.0 0 c 0 0 0 0 0 0 0 0 0 0 107.0 613.0 0.0 0.0 0.0 1997.0 0.0 0.0 0.0 1.0 415.0 593.0 402.0 0 g 0 0 0 0 0 0 0 0 0 0 361.0 39.0 2.0 30.0 2271.0 0.0 0.0 2.0 0.0 19.0 825.0 266.0 635.0 0 t 0 0 0 0 0 0 0 0 0 0 594.0 1159.0 0.0 2257.0 0.0 158.0 0.0 256.0 0.0 2016.0 605.0 530.0 415.0 0
MA0627.2_shift9 (POU2F3)				; positions_7nt_m5 versus MA0627.2 (POU2F3); m=2/7; ncol2=13; w=13; offset=9; strand=D; shift=9; score=0.477061; ---------watATGCAAATww-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 17399.0 26660.0 8522.0 54550.0 1090.0 980.0 946.0 54915.0 51382.0 55302.0 5115.0 16288.0 18907.0 0 0 c 0 0 0 0 0 0 0 0 0 11383.0 6824.0 6885.0 194.0 322.0 251.0 50288.0 80.0 567.0 164.0 3478.0 10595.0 11936.0 0 0 g 0 0 0 0 0 0 0 0 0 10722.0 8770.0 3029.0 354.0 1251.0 51971.0 1079.0 138.0 804.0 233.0 4098.0 13237.0 7941.0 0 0 t 0 0 0 0 0 0 0 0 0 16525.0 13775.0 37593.0 931.0 53366.0 2827.0 3716.0 896.0 3276.0 330.0 43338.0 15909.0 17245.0 0 0
MA0784.1_shift9 (POU1F1)				; positions_7nt_m5 versus MA0784.1 (POU1F1); m=3/7; ncol2=14; w=14; offset=9; strand=D; shift=9; score=0.45815; ---------awTATGCwAATkAg- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 1211.0 1128.0 276.0 2128.0 45.0 28.0 98.0 1267.0 2128.0 2128.0 76.0 222.0 2128.0 736.0 0 c 0 0 0 0 0 0 0 0 0 247.0 123.0 83.0 14.0 74.0 11.0 2128.0 12.0 11.0 10.0 37.0 241.0 174.0 479.0 0 g 0 0 0 0 0 0 0 0 0 273.0 187.0 108.0 32.0 26.0 2128.0 164.0 7.0 82.0 0.0 40.0 840.0 194.0 2128.0 0 t 0 0 0 0 0 0 0 0 0 397.0 1000.0 2128.0 19.0 2128.0 176.0 536.0 861.0 85.0 3.0 2128.0 1287.0 273.0 547.0 0
MA0786.1_shift10 (POU3F1)				; positions_7nt_m5 versus MA0786.1 (POU3F1); m=4/7; ncol2=12; w=12; offset=10; strand=D; shift=10; score=0.422426; ----------wTATGywAATkw-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 1034.0 505.0 2471.0 44.0 37.0 170.0 1423.0 2471.0 2471.0 259.0 382.0 1510.0 0 0 c 0 0 0 0 0 0 0 0 0 0 126.0 186.0 7.0 53.0 13.0 2471.0 1.0 103.0 20.0 95.0 302.0 478.0 0 0 g 0 0 0 0 0 0 0 0 0 0 322.0 128.0 26.0 21.0 2471.0 413.0 21.0 130.0 25.0 128.0 620.0 452.0 0 0 t 0 0 0 0 0 0 0 0 0 0 1437.0 2471.0 21.0 2471.0 232.0 1119.0 1048.0 284.0 63.0 2471.0 1167.0 961.0 0 0
MA0787.1_shift10 (POU3F2)				; positions_7nt_m5 versus MA0787.1 (POU3F2); m=5/7; ncol2=12; w=12; offset=10; strand=D; shift=10; score=0.419515; ----------wTATGCwAATka-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 591.0 163.0 1292.0 28.0 19.0 68.0 688.0 1292.0 1292.0 63.0 137.0 1292.0 0 0 c 0 0 0 0 0 0 0 0 0 0 61.0 65.0 16.0 30.0 9.0 1292.0 4.0 16.0 6.0 19.0 165.0 262.0 0 0 g 0 0 0 0 0 0 0 0 0 0 171.0 40.0 25.0 12.0 1292.0 153.0 1.0 32.0 0.0 28.0 452.0 261.0 0 0 t 0 0 0 0 0 0 0 0 0 0 700.0 1292.0 0.0 1292.0 60.0 372.0 604.0 45.0 13.0 1292.0 840.0 562.0 0 0
MA0785.1_shift9 (POU2F1)				; positions_7nt_m5 versus MA0785.1 (POU2F1); m=6/7; ncol2=12; w=12; offset=9; strand=D; shift=9; score=0.418638; ---------awTATGcwAATt--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 5076.0 5351.0 756.0 10582.0 153.0 186.0 300.0 6932.0 10582.0 10582.0 1422.0 1976.0 0 0 0 c 0 0 0 0 0 0 0 0 0 1938.0 1046.0 1347.0 12.0 501.0 82.0 10582.0 33.0 108.0 37.0 457.0 1840.0 0 0 0 g 0 0 0 0 0 0 0 0 0 1494.0 2142.0 474.0 29.0 213.0 10582.0 1351.0 46.0 879.0 51.0 755.0 2504.0 0 0 0 t 0 0 0 0 0 0 0 0 0 2075.0 5231.0 10582.0 43.0 10582.0 1326.0 3375.0 3651.0 787.0 158.0 10582.0 4262.0 0 0 0
MA0788.1_shift9 (POU3F3)				; positions_7nt_m5 versus MA0788.1 (POU3F3); m=7/7; ncol2=13; w=13; offset=9; strand=D; shift=9; score=0.405263; ---------wwTATGCwAATtw-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 576.0 440.0 129.0 1078.0 25.0 22.0 28.0 506.0 1078.0 1078.0 53.0 240.0 536.0 0 0 c 0 0 0 0 0 0 0 0 0 75.0 41.0 57.0 11.0 33.0 10.0 1078.0 4.0 11.0 6.0 20.0 141.0 85.0 0 0 g 0 0 0 0 0 0 0 0 0 137.0 131.0 64.0 12.0 49.0 1078.0 118.0 1.0 77.0 15.0 12.0 237.0 115.0 0 0 t 0 0 0 0 0 0 0 0 0 290.0 637.0 1078.0 30.0 1078.0 86.0 343.0 572.0 79.0 14.0 1078.0 1078.0 542.0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
positions_6nt_m1_shift0 (positions_6nt_m1)				; positions_6nt_m1; m=0 (reference); ncol1=24; shift=0; ncol=24; ydyatwTGCATATGCAwatryayr ; Alignment reference a 139 199 105 312 70 227 37 64 50 644 45 604 39 42 122 617 299 438 132 222 173 278 144 209 c 189 144 244 151 173 69 58 18 586 10 45 22 21 41 504 13 113 34 113 124 229 143 200 160 g 168 182 127 115 35 119 14 508 34 21 20 45 8 578 19 57 73 172 151 274 127 166 167 190 t 218 189 238 136 436 299 605 124 44 39 604 43 646 53 69 27 229 70 318 94 185 127 203 155
MA0507.1_rc_shift9 (POU2F2_rc)				; positions_6nt_m1 versus MA0507.1_rc (POU2F2_rc); m=1/5; ncol2=13; w=13; offset=9; strand=R; shift=9; score=0.472555; ---------wyATGCAAATkmr-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 1225.0 476.0 2285.0 0.0 16.0 132.0 2287.0 2029.0 2287.0 251.0 442.0 898.0 835.0 0 0 c 0 0 0 0 0 0 0 0 0 107.0 613.0 0.0 0.0 0.0 1997.0 0.0 0.0 0.0 1.0 415.0 593.0 402.0 0 0 g 0 0 0 0 0 0 0 0 0 361.0 39.0 2.0 30.0 2271.0 0.0 0.0 2.0 0.0 19.0 825.0 266.0 635.0 0 0 t 0 0 0 0 0 0 0 0 0 594.0 1159.0 0.0 2257.0 0.0 158.0 0.0 256.0 0.0 2016.0 605.0 530.0 415.0 0 0
MA0627.2_rc_shift1 (POU2F3_rc)				; positions_6nt_m1 versus MA0627.2_rc (POU2F3_rc); m=2/5; ncol2=13; w=13; offset=1; strand=R; shift=1; score=0.448842; -wwATTTGCATatw---------- ; cor=; Ncor= a 0 17245.0 15909.0 43338.0 330.0 3276.0 896.0 3716.0 2827.0 53366.0 931.0 37593.0 13775.0 16525.0 0 0 0 0 0 0 0 0 0 0 c 0 7941.0 13237.0 4098.0 233.0 804.0 138.0 1079.0 51971.0 1251.0 354.0 3029.0 8770.0 10722.0 0 0 0 0 0 0 0 0 0 0 g 0 11936.0 10595.0 3478.0 164.0 567.0 80.0 50288.0 251.0 322.0 194.0 6885.0 6824.0 11383.0 0 0 0 0 0 0 0 0 0 0 t 0 18907.0 16288.0 5115.0 55302.0 51382.0 54915.0 946.0 980.0 1090.0 54550.0 8522.0 26660.0 17399.0 0 0 0 0 0 0 0 0 0 0
MA0142.1_rc_shift3 (Pou5f1::Sox2_rc)				; positions_6nt_m1 versus MA0142.1_rc (Pou5f1::Sox2_rc); m=3/5; ncol2=15; w=15; offset=3; strand=R; shift=3; score=0.439087; ---aTtTGCATrwsAAwr------ ; cor=; Ncor= a 0 0 0 837.0 53.0 92.0 269.0 196.0 104.0 1332.0 80.0 612.0 907.0 63.0 1231.0 1270.0 701.0 389.0 0 0 0 0 0 0 c 0 0 0 207.0 75.0 315.0 30.0 129.0 1239.0 15.0 24.0 186.0 29.0 825.0 79.0 36.0 28.0 66.0 0 0 0 0 0 0 g 0 0 0 119.0 33.0 68.0 16.0 1029.0 16.0 5.0 30.0 365.0 18.0 363.0 12.0 50.0 58.0 846.0 0 0 0 0 0 0 t 0 0 0 198.0 1200.0 887.0 1050.0 14.0 10.0 17.0 1235.0 206.0 415.0 118.0 47.0 11.0 579.0 63.0 0 0 0 0 0 0
MA0784.1_rc_shift0 (POU1F1_rc)				; positions_6nt_m1 versus MA0784.1_rc (POU1F1_rc); m=4/5; ncol2=14; w=14; offset=0; strand=R; shift=0; score=0.418074; cTmATTwGCATAwt---------- ; cor=; Ncor= a 547.0 273.0 1287.0 2128.0 3.0 85.0 861.0 536.0 176.0 2128.0 19.0 2128.0 1000.0 397.0 0 0 0 0 0 0 0 0 0 0 c 2128.0 194.0 840.0 40.0 0.0 82.0 7.0 164.0 2128.0 26.0 32.0 108.0 187.0 273.0 0 0 0 0 0 0 0 0 0 0 g 479.0 174.0 241.0 37.0 10.0 11.0 12.0 2128.0 11.0 74.0 14.0 83.0 123.0 247.0 0 0 0 0 0 0 0 0 0 0 t 736.0 2128.0 222.0 76.0 2128.0 2128.0 1267.0 98.0 28.0 45.0 2128.0 276.0 1128.0 1211.0 0 0 0 0 0 0 0 0 0 0
MA0786.1_rc_shift1 (POU3F1_rc)				; positions_6nt_m1 versus MA0786.1_rc (POU3F1_rc); m=5/5; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.400107; -wmATTwrCATAw----------- ; cor=; Ncor= a 0 961.0 1167.0 2471.0 63.0 284.0 1048.0 1119.0 232.0 2471.0 21.0 2471.0 1437.0 0 0 0 0 0 0 0 0 0 0 0 c 0 452.0 620.0 128.0 25.0 130.0 21.0 413.0 2471.0 21.0 26.0 128.0 322.0 0 0 0 0 0 0 0 0 0 0 0 g 0 478.0 302.0 95.0 20.0 103.0 1.0 2471.0 13.0 53.0 7.0 186.0 126.0 0 0 0 0 0 0 0 0 0 0 0 t 0 1510.0 382.0 259.0 2471.0 2471.0 1423.0 170.0 37.0 44.0 2471.0 505.0 1034.0 0 0 0 0 0 0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
positions_6nt_m4_shift0 (positions_6nt_m4)				; positions_6nt_m4; m=0 (reference); ncol1=24; shift=0; ncol=24; rywywyaTgcAwATGCATATgcay ; Alignment reference a 218 144 208 145 193 105 459 61 122 88 542 245 539 11 41 42 682 117 597 88 137 149 349 159 c 165 208 158 209 141 349 85 107 56 440 50 132 57 49 9 646 13 70 24 90 80 370 105 197 g 208 160 183 168 187 99 110 58 390 86 72 50 79 13 669 24 41 51 89 60 419 74 181 140 t 163 242 205 232 233 201 100 528 186 140 90 327 79 681 35 42 18 516 44 516 118 161 119 258
MA0507.1_rc_shift10 (POU2F2_rc)				; positions_6nt_m4 versus MA0507.1_rc (POU2F2_rc); m=1/3; ncol2=13; w=13; offset=10; strand=R; shift=10; score=0.470354; ----------wyATGCAAATkmr- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 1225.0 476.0 2285.0 0.0 16.0 132.0 2287.0 2029.0 2287.0 251.0 442.0 898.0 835.0 0 c 0 0 0 0 0 0 0 0 0 0 107.0 613.0 0.0 0.0 0.0 1997.0 0.0 0.0 0.0 1.0 415.0 593.0 402.0 0 g 0 0 0 0 0 0 0 0 0 0 361.0 39.0 2.0 30.0 2271.0 0.0 0.0 2.0 0.0 19.0 825.0 266.0 635.0 0 t 0 0 0 0 0 0 0 0 0 0 594.0 1159.0 0.0 2257.0 0.0 158.0 0.0 256.0 0.0 2016.0 605.0 530.0 415.0 0
MA0142.1_shift5 (Pou5f1::Sox2)				; positions_6nt_m4 versus MA0142.1 (Pou5f1::Sox2); m=2/3; ncol2=15; w=15; offset=5; strand=D; shift=5; score=0.464113; -----ywTTswyATGCAaAt---- ; cor=; Ncor= a 0 0 0 0 0 63.0 579.0 11.0 47.0 118.0 415.0 206.0 1235.0 17.0 10.0 14.0 1050.0 887.0 1200.0 198.0 0 0 0 0 c 0 0 0 0 0 846.0 58.0 50.0 12.0 363.0 18.0 365.0 30.0 5.0 16.0 1029.0 16.0 68.0 33.0 119.0 0 0 0 0 g 0 0 0 0 0 66.0 28.0 36.0 79.0 825.0 29.0 186.0 24.0 15.0 1239.0 129.0 30.0 315.0 75.0 207.0 0 0 0 0 t 0 0 0 0 0 389.0 701.0 1270.0 1231.0 63.0 907.0 612.0 80.0 1332.0 104.0 196.0 269.0 92.0 53.0 837.0 0 0 0 0
MA0627.2_shift9 (POU2F3)				; positions_6nt_m4 versus MA0627.2 (POU2F3); m=3/3; ncol2=13; w=13; offset=9; strand=D; shift=9; score=0.442804; ---------watATGCAAATww-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 17399.0 26660.0 8522.0 54550.0 1090.0 980.0 946.0 54915.0 51382.0 55302.0 5115.0 16288.0 18907.0 0 0 c 0 0 0 0 0 0 0 0 0 11383.0 6824.0 6885.0 194.0 322.0 251.0 50288.0 80.0 567.0 164.0 3478.0 10595.0 11936.0 0 0 g 0 0 0 0 0 0 0 0 0 10722.0 8770.0 3029.0 354.0 1251.0 51971.0 1079.0 138.0 804.0 233.0 4098.0 13237.0 7941.0 0 0 t 0 0 0 0 0 0 0 0 0 16525.0 13775.0 37593.0 931.0 53366.0 2827.0 3716.0 896.0 3276.0 330.0 43338.0 15909.0 17245.0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
positions_6nt_m3_shift0 (positions_6nt_m3)				; positions_6nt_m3; m=0 (reference); ncol1=24; shift=0; ncol=24; rywtaTGCATwTGCATAtgyryat ; Alignment reference a 91 59 83 26 192 14 26 21 261 18 149 13 25 23 261 28 214 55 62 55 114 53 104 57 c 61 81 39 60 24 21 18 236 9 36 22 16 7 239 5 31 12 31 35 124 41 118 46 64 g 77 51 61 20 44 13 209 8 15 16 36 3 242 9 16 17 44 30 162 35 97 43 70 58 t 63 101 109 186 32 244 39 27 7 222 85 260 18 21 10 216 22 176 33 78 40 78 72 113
MA0507.1_shift5 (POU2F2)				; positions_6nt_m3 versus MA0507.1 (POU2F2); m=1/4; ncol2=13; w=13; offset=5; strand=D; shift=5; score=0.453038; -----ykmATTTGCATrw------ ; cor=; Ncor= a 0 0 0 0 0 415.0 530.0 605.0 2016.0 0.0 256.0 0.0 158.0 0.0 2257.0 0.0 1159.0 594.0 0 0 0 0 0 0 c 0 0 0 0 0 635.0 266.0 825.0 19.0 0.0 2.0 0.0 0.0 2271.0 30.0 2.0 39.0 361.0 0 0 0 0 0 0 g 0 0 0 0 0 402.0 593.0 415.0 1.0 0.0 0.0 0.0 1997.0 0.0 0.0 0.0 613.0 107.0 0 0 0 0 0 0 t 0 0 0 0 0 835.0 898.0 442.0 251.0 2287.0 2029.0 2287.0 132.0 16.0 0.0 2285.0 476.0 1225.0 0 0 0 0 0 0
MA0627.2_rc_shift6 (POU2F3_rc)				; positions_6nt_m3 versus MA0627.2_rc (POU2F3_rc); m=2/4; ncol2=13; w=13; offset=6; strand=R; shift=6; score=0.443694; ------wwATTTGCATatw----- ; cor=; Ncor= a 0 0 0 0 0 0 17245.0 15909.0 43338.0 330.0 3276.0 896.0 3716.0 2827.0 53366.0 931.0 37593.0 13775.0 16525.0 0 0 0 0 0 c 0 0 0 0 0 0 7941.0 13237.0 4098.0 233.0 804.0 138.0 1079.0 51971.0 1251.0 354.0 3029.0 8770.0 10722.0 0 0 0 0 0 g 0 0 0 0 0 0 11936.0 10595.0 3478.0 164.0 567.0 80.0 50288.0 251.0 322.0 194.0 6885.0 6824.0 11383.0 0 0 0 0 0 t 0 0 0 0 0 0 18907.0 16288.0 5115.0 55302.0 51382.0 54915.0 946.0 980.0 1090.0 54550.0 8522.0 26660.0 17399.0 0 0 0 0 0
MA0142.1_rc_shift8 (Pou5f1::Sox2_rc)				; positions_6nt_m3 versus MA0142.1_rc (Pou5f1::Sox2_rc); m=3/4; ncol2=15; w=15; offset=8; strand=R; shift=8; score=0.438656; --------aTtTGCATrwsAAwr- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 837.0 53.0 92.0 269.0 196.0 104.0 1332.0 80.0 612.0 907.0 63.0 1231.0 1270.0 701.0 389.0 0 c 0 0 0 0 0 0 0 0 207.0 75.0 315.0 30.0 129.0 1239.0 15.0 24.0 186.0 29.0 825.0 79.0 36.0 28.0 66.0 0 g 0 0 0 0 0 0 0 0 119.0 33.0 68.0 16.0 1029.0 16.0 5.0 30.0 365.0 18.0 363.0 12.0 50.0 58.0 846.0 0 t 0 0 0 0 0 0 0 0 198.0 1200.0 887.0 1050.0 14.0 10.0 17.0 1235.0 206.0 415.0 118.0 47.0 11.0 579.0 63.0 0
MA0785.1_rc_shift7 (POU2F1_rc)				; positions_6nt_m3 versus MA0785.1_rc (POU2F1_rc); m=4/4; ncol2=12; w=12; offset=7; strand=R; shift=7; score=0.403288; -------aATTwgCATAwt----- ; cor=; Ncor= a 0 0 0 0 0 0 0 4262.0 10582.0 158.0 787.0 3651.0 3375.0 1326.0 10582.0 43.0 10582.0 5231.0 2075.0 0 0 0 0 0 c 0 0 0 0 0 0 0 2504.0 755.0 51.0 879.0 46.0 1351.0 10582.0 213.0 29.0 474.0 2142.0 1494.0 0 0 0 0 0 g 0 0 0 0 0 0 0 1840.0 457.0 37.0 108.0 33.0 10582.0 82.0 501.0 12.0 1347.0 1046.0 1938.0 0 0 0 0 0 t 0 0 0 0 0 0 0 1976.0 1422.0 10582.0 10582.0 6932.0 300.0 186.0 153.0 10582.0 756.0 5351.0 5076.0 0 0 0 0 0