One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2021/02/16/peak-motifs.2021-02-16.144431_2021-02-16.144431_tXA9Xd/results/discovered_motifs/positions_7nt_m5/peak-motifs_positions_7nt_m5.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2021/02/16/peak-motifs.2021-02-16.144431_2021-02-16.144431_tXA9Xd/results/discovered_motifs/positions_7nt_m5/peak-motifs_positions_7nt_m5_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: positions_7nt_m5_shift0 ; 8 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
positions_7nt_m5_shift0 (positions_7nt_m5)
; positions_7nt_m5; m=0 (reference); ncol1=24; shift=0; ncol=24; gyrtatgygCATATGCAaATryry ; Alignment reference a 76 47 141 24 194 34 68 21 60 29 273 10 272 11 16 19 247 156 248 27 89 74 117 62 c 60 105 43 67 36 50 30 152 19 225 7 29 8 15 14 261 14 64 11 34 26 83 49 110 g 124 78 79 34 49 19 166 18 191 37 17 8 23 7 264 7 45 26 40 31 174 54 98 56 t 55 85 52 190 36 212 51 124 45 24 18 268 12 282 21 28 9 69 16 223 26 104 51 87

MA0507.1_rc_shift10 (POU2F2_rc)
; positions_7nt_m5 versus MA0507.1_rc (POU2F2_rc); m=1/7; ncol2=13; w=13; offset=10; strand=R; shift=10; score=0.495057; ----------wyATGCAAATkmr- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 1225.0 476.0 2285.0 0.0 16.0 132.0 2287.0 2029.0 2287.0 251.0 442.0 898.0 835.0 0 c 0 0 0 0 0 0 0 0 0 0 107.0 613.0 0.0 0.0 0.0 1997.0 0.0 0.0 0.0 1.0 415.0 593.0 402.0 0 g 0 0 0 0 0 0 0 0 0 0 361.0 39.0 2.0 30.0 2271.0 0.0 0.0 2.0 0.0 19.0 825.0 266.0 635.0 0 t 0 0 0 0 0 0 0 0 0 0 594.0 1159.0 0.0 2257.0 0.0 158.0 0.0 256.0 0.0 2016.0 605.0 530.0 415.0 0

MA0627.2_shift9 (POU2F3)
; positions_7nt_m5 versus MA0627.2 (POU2F3); m=2/7; ncol2=13; w=13; offset=9; strand=D; shift=9; score=0.477061; ---------watATGCAAATww-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 17399.0 26660.0 8522.0 54550.0 1090.0 980.0 946.0 54915.0 51382.0 55302.0 5115.0 16288.0 18907.0 0 0 c 0 0 0 0 0 0 0 0 0 11383.0 6824.0 6885.0 194.0 322.0 251.0 50288.0 80.0 567.0 164.0 3478.0 10595.0 11936.0 0 0 g 0 0 0 0 0 0 0 0 0 10722.0 8770.0 3029.0 354.0 1251.0 51971.0 1079.0 138.0 804.0 233.0 4098.0 13237.0 7941.0 0 0 t 0 0 0 0 0 0 0 0 0 16525.0 13775.0 37593.0 931.0 53366.0 2827.0 3716.0 896.0 3276.0 330.0 43338.0 15909.0 17245.0 0 0

MA0784.1_shift9 (POU1F1)
; positions_7nt_m5 versus MA0784.1 (POU1F1); m=3/7; ncol2=14; w=14; offset=9; strand=D; shift=9; score=0.45815; ---------awTATGCwAATkAg- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 1211.0 1128.0 276.0 2128.0 45.0 28.0 98.0 1267.0 2128.0 2128.0 76.0 222.0 2128.0 736.0 0 c 0 0 0 0 0 0 0 0 0 247.0 123.0 83.0 14.0 74.0 11.0 2128.0 12.0 11.0 10.0 37.0 241.0 174.0 479.0 0 g 0 0 0 0 0 0 0 0 0 273.0 187.0 108.0 32.0 26.0 2128.0 164.0 7.0 82.0 0.0 40.0 840.0 194.0 2128.0 0 t 0 0 0 0 0 0 0 0 0 397.0 1000.0 2128.0 19.0 2128.0 176.0 536.0 861.0 85.0 3.0 2128.0 1287.0 273.0 547.0 0

MA0786.1_shift10 (POU3F1)
; positions_7nt_m5 versus MA0786.1 (POU3F1); m=4/7; ncol2=12; w=12; offset=10; strand=D; shift=10; score=0.422426; ----------wTATGywAATkw-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 1034.0 505.0 2471.0 44.0 37.0 170.0 1423.0 2471.0 2471.0 259.0 382.0 1510.0 0 0 c 0 0 0 0 0 0 0 0 0 0 126.0 186.0 7.0 53.0 13.0 2471.0 1.0 103.0 20.0 95.0 302.0 478.0 0 0 g 0 0 0 0 0 0 0 0 0 0 322.0 128.0 26.0 21.0 2471.0 413.0 21.0 130.0 25.0 128.0 620.0 452.0 0 0 t 0 0 0 0 0 0 0 0 0 0 1437.0 2471.0 21.0 2471.0 232.0 1119.0 1048.0 284.0 63.0 2471.0 1167.0 961.0 0 0

MA0787.1_shift10 (POU3F2)
; positions_7nt_m5 versus MA0787.1 (POU3F2); m=5/7; ncol2=12; w=12; offset=10; strand=D; shift=10; score=0.419515; ----------wTATGCwAATka-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 591.0 163.0 1292.0 28.0 19.0 68.0 688.0 1292.0 1292.0 63.0 137.0 1292.0 0 0 c 0 0 0 0 0 0 0 0 0 0 61.0 65.0 16.0 30.0 9.0 1292.0 4.0 16.0 6.0 19.0 165.0 262.0 0 0 g 0 0 0 0 0 0 0 0 0 0 171.0 40.0 25.0 12.0 1292.0 153.0 1.0 32.0 0.0 28.0 452.0 261.0 0 0 t 0 0 0 0 0 0 0 0 0 0 700.0 1292.0 0.0 1292.0 60.0 372.0 604.0 45.0 13.0 1292.0 840.0 562.0 0 0

MA0785.1_shift9 (POU2F1)
; positions_7nt_m5 versus MA0785.1 (POU2F1); m=6/7; ncol2=12; w=12; offset=9; strand=D; shift=9; score=0.418638; ---------awTATGcwAATt--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 5076.0 5351.0 756.0 10582.0 153.0 186.0 300.0 6932.0 10582.0 10582.0 1422.0 1976.0 0 0 0 c 0 0 0 0 0 0 0 0 0 1938.0 1046.0 1347.0 12.0 501.0 82.0 10582.0 33.0 108.0 37.0 457.0 1840.0 0 0 0 g 0 0 0 0 0 0 0 0 0 1494.0 2142.0 474.0 29.0 213.0 10582.0 1351.0 46.0 879.0 51.0 755.0 2504.0 0 0 0 t 0 0 0 0 0 0 0 0 0 2075.0 5231.0 10582.0 43.0 10582.0 1326.0 3375.0 3651.0 787.0 158.0 10582.0 4262.0 0 0 0

MA0788.1_shift9 (POU3F3)
; positions_7nt_m5 versus MA0788.1 (POU3F3); m=7/7; ncol2=13; w=13; offset=9; strand=D; shift=9; score=0.405263; ---------wwTATGCwAATtw-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 576.0 440.0 129.0 1078.0 25.0 22.0 28.0 506.0 1078.0 1078.0 53.0 240.0 536.0 0 0 c 0 0 0 0 0 0 0 0 0 75.0 41.0 57.0 11.0 33.0 10.0 1078.0 4.0 11.0 6.0 20.0 141.0 85.0 0 0 g 0 0 0 0 0 0 0 0 0 137.0 131.0 64.0 12.0 49.0 1078.0 118.0 1.0 77.0 15.0 12.0 237.0 115.0 0 0 t 0 0 0 0 0 0 0 0 0 290.0 637.0 1078.0 30.0 1078.0 86.0 343.0 572.0 79.0 14.0 1078.0 1078.0 542.0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
positions_7nt_m5_shift0 (positions_7nt_m5)				; positions_7nt_m5; m=0 (reference); ncol1=24; shift=0; ncol=24; gyrtatgygCATATGCAaATryry ; Alignment reference a 76 47 141 24 194 34 68 21 60 29 273 10 272 11 16 19 247 156 248 27 89 74 117 62 c 60 105 43 67 36 50 30 152 19 225 7 29 8 15 14 261 14 64 11 34 26 83 49 110 g 124 78 79 34 49 19 166 18 191 37 17 8 23 7 264 7 45 26 40 31 174 54 98 56 t 55 85 52 190 36 212 51 124 45 24 18 268 12 282 21 28 9 69 16 223 26 104 51 87
MA0507.1_rc_shift10 (POU2F2_rc)				; positions_7nt_m5 versus MA0507.1_rc (POU2F2_rc); m=1/7; ncol2=13; w=13; offset=10; strand=R; shift=10; score=0.495057; ----------wyATGCAAATkmr- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 1225.0 476.0 2285.0 0.0 16.0 132.0 2287.0 2029.0 2287.0 251.0 442.0 898.0 835.0 0 c 0 0 0 0 0 0 0 0 0 0 107.0 613.0 0.0 0.0 0.0 1997.0 0.0 0.0 0.0 1.0 415.0 593.0 402.0 0 g 0 0 0 0 0 0 0 0 0 0 361.0 39.0 2.0 30.0 2271.0 0.0 0.0 2.0 0.0 19.0 825.0 266.0 635.0 0 t 0 0 0 0 0 0 0 0 0 0 594.0 1159.0 0.0 2257.0 0.0 158.0 0.0 256.0 0.0 2016.0 605.0 530.0 415.0 0
MA0627.2_shift9 (POU2F3)				; positions_7nt_m5 versus MA0627.2 (POU2F3); m=2/7; ncol2=13; w=13; offset=9; strand=D; shift=9; score=0.477061; ---------watATGCAAATww-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 17399.0 26660.0 8522.0 54550.0 1090.0 980.0 946.0 54915.0 51382.0 55302.0 5115.0 16288.0 18907.0 0 0 c 0 0 0 0 0 0 0 0 0 11383.0 6824.0 6885.0 194.0 322.0 251.0 50288.0 80.0 567.0 164.0 3478.0 10595.0 11936.0 0 0 g 0 0 0 0 0 0 0 0 0 10722.0 8770.0 3029.0 354.0 1251.0 51971.0 1079.0 138.0 804.0 233.0 4098.0 13237.0 7941.0 0 0 t 0 0 0 0 0 0 0 0 0 16525.0 13775.0 37593.0 931.0 53366.0 2827.0 3716.0 896.0 3276.0 330.0 43338.0 15909.0 17245.0 0 0
MA0784.1_shift9 (POU1F1)				; positions_7nt_m5 versus MA0784.1 (POU1F1); m=3/7; ncol2=14; w=14; offset=9; strand=D; shift=9; score=0.45815; ---------awTATGCwAATkAg- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 1211.0 1128.0 276.0 2128.0 45.0 28.0 98.0 1267.0 2128.0 2128.0 76.0 222.0 2128.0 736.0 0 c 0 0 0 0 0 0 0 0 0 247.0 123.0 83.0 14.0 74.0 11.0 2128.0 12.0 11.0 10.0 37.0 241.0 174.0 479.0 0 g 0 0 0 0 0 0 0 0 0 273.0 187.0 108.0 32.0 26.0 2128.0 164.0 7.0 82.0 0.0 40.0 840.0 194.0 2128.0 0 t 0 0 0 0 0 0 0 0 0 397.0 1000.0 2128.0 19.0 2128.0 176.0 536.0 861.0 85.0 3.0 2128.0 1287.0 273.0 547.0 0
MA0786.1_shift10 (POU3F1)				; positions_7nt_m5 versus MA0786.1 (POU3F1); m=4/7; ncol2=12; w=12; offset=10; strand=D; shift=10; score=0.422426; ----------wTATGywAATkw-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 1034.0 505.0 2471.0 44.0 37.0 170.0 1423.0 2471.0 2471.0 259.0 382.0 1510.0 0 0 c 0 0 0 0 0 0 0 0 0 0 126.0 186.0 7.0 53.0 13.0 2471.0 1.0 103.0 20.0 95.0 302.0 478.0 0 0 g 0 0 0 0 0 0 0 0 0 0 322.0 128.0 26.0 21.0 2471.0 413.0 21.0 130.0 25.0 128.0 620.0 452.0 0 0 t 0 0 0 0 0 0 0 0 0 0 1437.0 2471.0 21.0 2471.0 232.0 1119.0 1048.0 284.0 63.0 2471.0 1167.0 961.0 0 0
MA0787.1_shift10 (POU3F2)				; positions_7nt_m5 versus MA0787.1 (POU3F2); m=5/7; ncol2=12; w=12; offset=10; strand=D; shift=10; score=0.419515; ----------wTATGCwAATka-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 591.0 163.0 1292.0 28.0 19.0 68.0 688.0 1292.0 1292.0 63.0 137.0 1292.0 0 0 c 0 0 0 0 0 0 0 0 0 0 61.0 65.0 16.0 30.0 9.0 1292.0 4.0 16.0 6.0 19.0 165.0 262.0 0 0 g 0 0 0 0 0 0 0 0 0 0 171.0 40.0 25.0 12.0 1292.0 153.0 1.0 32.0 0.0 28.0 452.0 261.0 0 0 t 0 0 0 0 0 0 0 0 0 0 700.0 1292.0 0.0 1292.0 60.0 372.0 604.0 45.0 13.0 1292.0 840.0 562.0 0 0
MA0785.1_shift9 (POU2F1)				; positions_7nt_m5 versus MA0785.1 (POU2F1); m=6/7; ncol2=12; w=12; offset=9; strand=D; shift=9; score=0.418638; ---------awTATGcwAATt--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 5076.0 5351.0 756.0 10582.0 153.0 186.0 300.0 6932.0 10582.0 10582.0 1422.0 1976.0 0 0 0 c 0 0 0 0 0 0 0 0 0 1938.0 1046.0 1347.0 12.0 501.0 82.0 10582.0 33.0 108.0 37.0 457.0 1840.0 0 0 0 g 0 0 0 0 0 0 0 0 0 1494.0 2142.0 474.0 29.0 213.0 10582.0 1351.0 46.0 879.0 51.0 755.0 2504.0 0 0 0 t 0 0 0 0 0 0 0 0 0 2075.0 5231.0 10582.0 43.0 10582.0 1326.0 3375.0 3651.0 787.0 158.0 10582.0 4262.0 0 0 0
MA0788.1_shift9 (POU3F3)				; positions_7nt_m5 versus MA0788.1 (POU3F3); m=7/7; ncol2=13; w=13; offset=9; strand=D; shift=9; score=0.405263; ---------wwTATGCwAATtw-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 576.0 440.0 129.0 1078.0 25.0 22.0 28.0 506.0 1078.0 1078.0 53.0 240.0 536.0 0 0 c 0 0 0 0 0 0 0 0 0 75.0 41.0 57.0 11.0 33.0 10.0 1078.0 4.0 11.0 6.0 20.0 141.0 85.0 0 0 g 0 0 0 0 0 0 0 0 0 137.0 131.0 64.0 12.0 49.0 1078.0 118.0 1.0 77.0 15.0 12.0 237.0 115.0 0 0 t 0 0 0 0 0 0 0 0 0 290.0 637.0 1078.0 30.0 1078.0 86.0 343.0 572.0 79.0 14.0 1078.0 1078.0 542.0 0 0