One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2021/02/16/peak-motifs.2021-02-16.144431_2021-02-16.144431_tXA9Xd/results/discovered_motifs/positions_6nt_m5/peak-motifs_positions_6nt_m5.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2021/02/16/peak-motifs.2021-02-16.144431_2021-02-16.144431_tXA9Xd/results/discovered_motifs/positions_6nt_m5/peak-motifs_positions_6nt_m5_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: positions_6nt_m5_shift7 ; 19 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
positions_6nt_m5_shift7 (positions_6nt_m5)
; positions_6nt_m5; m=0 (reference); ncol1=11; shift=7; ncol=18; -------waACAAAGgam ; Alignment reference a 0 0 0 0 0 0 0 295 332 1009 3 971 932 943 25 174 304 327 c 0 0 0 0 0 0 0 132 233 7 969 13 43 15 13 158 252 272 g 0 0 0 0 0 0 0 217 220 5 16 14 26 6 950 625 230 221 t 0 0 0 0 0 0 0 387 246 10 43 33 30 67 43 74 245 211

MA0867.2_shift7 (SOX4)
; positions_6nt_m5 versus MA0867.2 (SOX4); m=1/18; ncol2=10; w=10; offset=0; strand=D; shift=7; score=0.855367; -------gaACAAwGrv- ; cor=; Ncor= a 0 0 0 0 0 0 0 3190.0 5582.0 5582.0 0.0 5582.0 5582.0 5582.0 1018.0 2093.0 1775.0 0 c 0 0 0 0 0 0 0 1771.0 951.0 0.0 5582.0 1.0 6.0 120.0 64.0 1422.0 1438.0 0 g 0 0 0 0 0 0 0 5582.0 2047.0 0.0 37.0 6.0 11.0 50.0 5582.0 3489.0 1889.0 0 t 0 0 0 0 0 0 0 2286.0 431.0 9.0 33.0 0.0 0.0 2719.0 83.0 174.0 480.0 0

MA0442.2_shift6 (SOX10)
; positions_6nt_m5 versus MA0442.2 (SOX10); m=2/18; ncol2=11; w=10; offset=-1; strand=D; shift=6; score=0.809048; ------rraACAAAGvm- ; cor=; Ncor= a 0 0 0 0 0 0 683.0 723.0 1118.0 2023.0 3.0 2029.0 1968.0 1959.0 10.0 666.0 638.0 0 c 0 0 0 0 0 0 397.0 283.0 372.0 4.0 1989.0 7.0 28.0 23.0 13.0 552.0 555.0 0 g 0 0 0 0 0 0 527.0 571.0 317.0 3.0 11.0 7.0 20.0 12.0 2012.0 619.0 505.0 0 t 0 0 0 0 0 0 448.0 478.0 248.0 25.0 52.0 12.0 39.0 61.0 20.0 218.0 357.0 0

MA0143.4_shift7 (SOX2)
; positions_6nt_m5 versus MA0143.4 (SOX2); m=3/18; ncol2=11; w=11; offset=0; strand=D; shift=7; score=0.806603; -------wwACAATGgww ; cor=; Ncor= a 0 0 0 0 0 0 0 29105.0 30279.0 83515.0 1307.0 81587.0 80825.0 4815.0 9926.0 14772.0 28860.0 28960.0 c 0 0 0 0 0 0 0 11041.0 15154.0 436.0 78356.0 1205.0 1742.0 732.0 800.0 6264.0 17158.0 17475.0 g 0 0 0 0 0 0 0 21434.0 17157.0 418.0 1243.0 550.0 2002.0 930.0 73372.0 54414.0 17765.0 15998.0 t 0 0 0 0 0 0 0 24174.0 23164.0 1385.0 4848.0 2412.0 1185.0 79277.0 1656.0 10304.0 21971.0 23321.0

MA1120.1_shift7 (SOX13)
; positions_6nt_m5 versus MA1120.1 (SOX13); m=4/18; ncol2=11; w=11; offset=0; strand=D; shift=7; score=0.795842; -------raACAATGgmw ; cor=; Ncor= a 0 0 0 0 0 0 0 1539.0 1795.0 4451.0 55.0 4329.0 4390.0 156.0 585.0 778.0 1228.0 1228.0 c 0 0 0 0 0 0 0 663.0 958.0 22.0 4276.0 55.0 48.0 77.0 57.0 647.0 1257.0 1126.0 g 0 0 0 0 0 0 0 1395.0 1049.0 40.0 60.0 50.0 63.0 28.0 3837.0 2666.0 1074.0 1046.0 t 0 0 0 0 0 0 0 955.0 750.0 39.0 161.0 118.0 51.0 4291.0 73.0 461.0 993.0 1152.0

MA0514.1_rc_shift6 (Sox3_rc)
; positions_6nt_m5 versus MA0514.1_rc (Sox3_rc); m=5/18; ncol2=10; w=9; offset=-1; strand=R; shift=6; score=0.70454; ------rrrACAAAGG-- ; cor=; Ncor= a 0 0 0 0 0 0 989.0 1173.0 1115.0 2067.0 0.0 2067.0 2067.0 1805.0 515.0 250.0 0 0 c 0 0 0 0 0 0 382.0 22.0 254.0 0.0 1923.0 0.0 0.0 0.0 0.0 330.0 0 0 g 0 0 0 0 0 0 654.0 853.0 698.0 0.0 144.0 0.0 0.0 0.0 1552.0 1487.0 0 0 t 0 0 0 0 0 0 42.0 19.0 0.0 0.0 0.0 0.0 0.0 262.0 0.0 0.0 0 0

MA1603.1_shift6 (Dmrt1)
; positions_6nt_m5 versus MA1603.1 (Dmrt1); m=6/18; ncol2=13; w=11; offset=-1; strand=D; shift=6; score=0.674378; ------gwtACAAWGTaw ; cor=; Ncor= a 0 0 0 0 0 0 2593.0 7473.0 3915.0 17933.0 211.0 17489.0 15568.0 12433.0 727.0 547.0 10367.0 5909.0 c 0 0 0 0 0 0 1113.0 4222.0 1228.0 69.0 17633.0 110.0 482.0 205.0 185.0 161.0 1233.0 1333.0 g 0 0 0 0 0 0 12329.0 1246.0 918.0 82.0 139.0 104.0 456.0 322.0 17032.0 200.0 2521.0 4132.0 t 0 0 0 0 0 0 2260.0 5354.0 12234.0 211.0 312.0 592.0 1789.0 5335.0 351.0 17387.0 4174.0 6921.0

MA0515.1_rc_shift6 (Sox6_rc)
; positions_6nt_m5 versus MA0515.1_rc (Sox6_rc); m=7/18; ncol2=10; w=9; offset=-1; strand=R; shift=6; score=0.647712; ------rrrACAAwGg-- ; cor=; Ncor= a 0 0 0 0 0 0 128.0 133.0 129.0 249.0 0.0 249.0 249.0 88.0 28.0 56.0 0 0 c 0 0 0 0 0 0 31.0 0.0 5.0 0.0 249.0 0.0 0.0 0.0 0.0 50.0 0 0 g 0 0 0 0 0 0 76.0 112.0 115.0 0.0 0.0 0.0 0.0 0.0 221.0 139.0 0 0 t 0 0 0 0 0 0 14.0 4.0 0.0 0.0 0.0 0.0 0.0 161.0 0.0 4.0 0 0

MA1152.1_rc_shift6 (SOX15_rc)
; positions_6nt_m5 versus MA1152.1_rc (SOX15_rc); m=8/18; ncol2=10; w=9; offset=-1; strand=R; shift=6; score=0.626166; ------araACAAwrr-- ; cor=; Ncor= a 0 0 0 0 0 0 407.0 418.0 506.0 971.0 5.0 994.0 988.0 362.0 501.0 267.0 0 0 c 0 0 0 0 0 0 165.0 114.0 125.0 3.0 890.0 2.0 6.0 5.0 26.0 147.0 0 0 g 0 0 0 0 0 0 188.0 253.0 188.0 2.0 21.0 2.0 3.0 3.0 412.0 554.0 0 0 t 0 0 0 0 0 0 241.0 215.0 180.0 24.0 83.0 3.0 3.0 631.0 62.0 32.0 0 0

MA0769.2_rc_shift6 (TCF7_rc)
; positions_6nt_m5 versus MA0769.2_rc (TCF7_rc); m=9/18; ncol2=11; w=10; offset=-1; strand=R; shift=6; score=0.60771; ------aswTCAAAGrm- ; cor=; Ncor= a 0 0 0 0 0 0 7070.0 1982.0 8498.0 239.0 478.0 14489.0 14178.0 14556.0 157.0 4082.0 4335.0 0 c 0 0 0 0 0 0 1688.0 5325.0 1220.0 115.0 13972.0 83.0 266.0 67.0 206.0 3198.0 3981.0 0 g 0 0 0 0 0 0 2740.0 4774.0 855.0 63.0 278.0 62.0 248.0 125.0 14379.0 4604.0 3657.0 0 t 0 0 0 0 0 0 3496.0 2913.0 4421.0 14577.0 266.0 360.0 302.0 246.0 252.0 3110.0 3021.0 0

MA0078.1_rc_shift8 (Sox17_rc)
; positions_6nt_m5 versus MA0078.1_rc (Sox17_rc); m=10/18; ncol2=9; w=9; offset=1; strand=R; shift=8; score=0.585843; --------sACAATrdr- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 4.0 29.0 0.0 31.0 30.0 1.0 9.0 11.0 9.0 0 c 0 0 0 0 0 0 0 0 10.0 2.0 31.0 0.0 0.0 0.0 1.0 4.0 6.0 0 g 0 0 0 0 0 0 0 0 17.0 0.0 0.0 0.0 1.0 0.0 18.0 8.0 9.0 0 t 0 0 0 0 0 0 0 0 0.0 0.0 0.0 0.0 0.0 30.0 3.0 8.0 7.0 0

MA0077.1_rc_shift7 (SOX9_rc)
; positions_6nt_m5 versus MA0077.1_rc (SOX9_rc); m=11/18; ncol2=9; w=9; offset=0; strand=R; shift=7; score=0.584339; -------rAACAATrG-- ; cor=; Ncor= a 0 0 0 0 0 0 0 24.0 54.0 59.0 0.0 65.0 71.0 4.0 24.0 9.0 0 0 c 0 0 0 0 0 0 0 7.0 6.0 4.0 72.0 4.0 2.0 0.0 6.0 9.0 0 0 g 0 0 0 0 0 0 0 31.0 7.0 0.0 2.0 0.0 1.0 1.0 38.0 55.0 0 0 t 0 0 0 0 0 0 0 14.0 9.0 13.0 2.0 7.0 2.0 71.0 8.0 3.0 0 0

MA0868.2_shift6 (SOX8)
; positions_6nt_m5 versus MA0868.2 (SOX8); m=12/18; ncol2=10; w=9; offset=-1; strand=D; shift=6; score=0.564306; ------agAACAATrg-- ; cor=; Ncor= a 0 0 0 0 0 0 1827.0 740.0 1827.0 1827.0 3.0 1827.0 1827.0 273.0 1356.0 300.0 0 0 c 0 0 0 0 0 0 1124.0 414.0 151.0 0.0 1827.0 0.0 43.0 36.0 208.0 421.0 0 0 g 0 0 0 0 0 0 854.0 1827.0 263.0 0.0 35.0 0.0 0.0 20.0 1827.0 912.0 0 0 t 0 0 0 0 0 0 724.0 571.0 222.0 45.0 70.0 16.0 36.0 1827.0 287.0 193.0 0 0

MA0523.1_shift4 (TCF7L2)
; positions_6nt_m5 versus MA0523.1 (TCF7L2); m=13/18; ncol2=14; w=11; offset=-3; strand=D; shift=4; score=0.552001; ----rrAswTCAAAGgva ; cor=; Ncor= a 0 0 0 0 1525.0 1808.0 3070.0 85.0 2795.0 138.0 155.0 4188.0 4103.0 4169.0 303.0 1035.0 1398.0 1782.0 c 0 0 0 0 756.0 840.0 136.0 1947.0 26.0 0.0 3304.0 0.0 15.0 0.0 37.0 849.0 1123.0 826.0 g 0 0 0 0 1140.0 1153.0 559.0 2008.0 0.0 0.0 729.0 0.0 70.0 19.0 3848.0 2008.0 1210.0 757.0 t 0 0 0 0 767.0 387.0 423.0 148.0 1367.0 4050.0 0.0 0.0 0.0 0.0 0.0 296.0 457.0 823.0

MA1563.1_shift8 (SOX18)
; positions_6nt_m5 versus MA1563.1 (SOX18); m=14/18; ncol2=8; w=8; offset=1; strand=D; shift=8; score=0.520403; --------vACaAyGs-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 153.0 589.0 0.0 589.0 589.0 0.0 188.0 116.0 0 0 c 0 0 0 0 0 0 0 0 216.0 33.0 589.0 139.0 104.0 374.0 0.0 287.0 0 0 g 0 0 0 0 0 0 0 0 168.0 140.0 0.0 216.0 67.0 0.0 589.0 190.0 0 0 t 0 0 0 0 0 0 0 0 52.0 94.0 0.0 27.0 14.0 589.0 0.0 0.0 0 0

MA1421.1_shift4 (TCF7L1)
; positions_6nt_m5 versus MA1421.1 (TCF7L1); m=15/18; ncol2=12; w=9; offset=-3; strand=D; shift=4; score=0.460051; ----AAAGATCAAAGG-- ; cor=; Ncor= a 0 0 0 0 109.0 159.0 159.0 0.0 159.0 0.0 5.0 159.0 159.0 159.0 0.0 28.0 0 0 c 0 0 0 0 20.0 7.0 0.0 33.0 9.0 6.0 159.0 2.0 0.0 0.0 9.0 9.0 0 0 g 0 0 0 0 6.0 30.0 0.0 126.0 13.0 9.0 0.0 1.0 0.0 2.0 159.0 113.0 0 0 t 0 0 0 0 24.0 7.0 5.0 6.0 18.0 159.0 0.0 0.0 0.0 0.0 5.0 9.0 0 0

MA0084.1_shift5 (SRY)
; positions_6nt_m5 versus MA0084.1 (SRY); m=16/18; ncol2=9; w=7; offset=-2; strand=D; shift=5; score=0.448424; -----kwwaACAAw---- ; cor=; Ncor= a 0 0 0 0 0 5.0 8.0 15.0 18.0 25.0 0.0 28.0 27.0 7.0 0 0 0 0 c 0 0 0 0 0 5.0 3.0 0.0 3.0 0.0 26.0 0.0 0.0 0.0 0 0 0 0 g 0 0 0 0 0 10.0 4.0 3.0 3.0 0.0 0.0 0.0 1.0 2.0 0 0 0 0 t 0 0 0 0 0 8.0 13.0 10.0 4.0 3.0 2.0 0.0 0.0 19.0 0 0 0 0

MA0087.1_rc_shift7 (Sox5_rc)
; positions_6nt_m5 versus MA0087.1_rc (Sox5_rc); m=17/18; ncol2=7; w=7; offset=0; strand=R; shift=7; score=0.448344; -------wAACAAT---- ; cor=; Ncor= a 0 0 0 0 0 0 0 8.0 21.0 22.0 0.0 23.0 22.0 0.0 0 0 0 0 c 0 0 0 0 0 0 0 4.0 0.0 0.0 22.0 0.0 1.0 0.0 0 0 0 0 g 0 0 0 0 0 0 0 3.0 1.0 1.0 0.0 0.0 0.0 0.0 0 0 0 0 t 0 0 0 0 0 0 0 8.0 1.0 0.0 1.0 0.0 0.0 23.0 0 0 0 0

MA0851.1_shift0 (Foxj3)
; positions_6nt_m5 versus MA0851.1 (Foxj3); m=18/18; ncol2=17; w=10; offset=-7; strand=D; shift=0; score= 0.4005; hraarRTAAACAAwsmc- ; cor=; Ncor= a 27.0 34.0 48.0 51.0 35.0 30.0 1.0 91.0 96.0 99.0 0.0 99.0 79.0 57.0 22.0 27.0 24.0 0 c 26.0 13.0 19.0 13.0 13.0 1.0 2.0 8.0 2.0 0.0 81.0 0.0 7.0 9.0 34.0 27.0 39.0 0 g 21.0 31.0 16.0 17.0 33.0 68.0 0.0 0.0 0.0 0.0 0.0 0.0 6.0 7.0 26.0 24.0 17.0 0 t 26.0 22.0 17.0 19.0 20.0 0.0 97.0 0.0 3.0 1.0 18.0 1.0 9.0 27.0 18.0 22.0 19.0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
positions_6nt_m5_shift7 (positions_6nt_m5)				; positions_6nt_m5; m=0 (reference); ncol1=11; shift=7; ncol=18; -------waACAAAGgam ; Alignment reference a 0 0 0 0 0 0 0 295 332 1009 3 971 932 943 25 174 304 327 c 0 0 0 0 0 0 0 132 233 7 969 13 43 15 13 158 252 272 g 0 0 0 0 0 0 0 217 220 5 16 14 26 6 950 625 230 221 t 0 0 0 0 0 0 0 387 246 10 43 33 30 67 43 74 245 211
MA0867.2_shift7 (SOX4)				; positions_6nt_m5 versus MA0867.2 (SOX4); m=1/18; ncol2=10; w=10; offset=0; strand=D; shift=7; score=0.855367; -------gaACAAwGrv- ; cor=; Ncor= a 0 0 0 0 0 0 0 3190.0 5582.0 5582.0 0.0 5582.0 5582.0 5582.0 1018.0 2093.0 1775.0 0 c 0 0 0 0 0 0 0 1771.0 951.0 0.0 5582.0 1.0 6.0 120.0 64.0 1422.0 1438.0 0 g 0 0 0 0 0 0 0 5582.0 2047.0 0.0 37.0 6.0 11.0 50.0 5582.0 3489.0 1889.0 0 t 0 0 0 0 0 0 0 2286.0 431.0 9.0 33.0 0.0 0.0 2719.0 83.0 174.0 480.0 0
MA0442.2_shift6 (SOX10)				; positions_6nt_m5 versus MA0442.2 (SOX10); m=2/18; ncol2=11; w=10; offset=-1; strand=D; shift=6; score=0.809048; ------rraACAAAGvm- ; cor=; Ncor= a 0 0 0 0 0 0 683.0 723.0 1118.0 2023.0 3.0 2029.0 1968.0 1959.0 10.0 666.0 638.0 0 c 0 0 0 0 0 0 397.0 283.0 372.0 4.0 1989.0 7.0 28.0 23.0 13.0 552.0 555.0 0 g 0 0 0 0 0 0 527.0 571.0 317.0 3.0 11.0 7.0 20.0 12.0 2012.0 619.0 505.0 0 t 0 0 0 0 0 0 448.0 478.0 248.0 25.0 52.0 12.0 39.0 61.0 20.0 218.0 357.0 0
MA0143.4_shift7 (SOX2)				; positions_6nt_m5 versus MA0143.4 (SOX2); m=3/18; ncol2=11; w=11; offset=0; strand=D; shift=7; score=0.806603; -------wwACAATGgww ; cor=; Ncor= a 0 0 0 0 0 0 0 29105.0 30279.0 83515.0 1307.0 81587.0 80825.0 4815.0 9926.0 14772.0 28860.0 28960.0 c 0 0 0 0 0 0 0 11041.0 15154.0 436.0 78356.0 1205.0 1742.0 732.0 800.0 6264.0 17158.0 17475.0 g 0 0 0 0 0 0 0 21434.0 17157.0 418.0 1243.0 550.0 2002.0 930.0 73372.0 54414.0 17765.0 15998.0 t 0 0 0 0 0 0 0 24174.0 23164.0 1385.0 4848.0 2412.0 1185.0 79277.0 1656.0 10304.0 21971.0 23321.0
MA1120.1_shift7 (SOX13)				; positions_6nt_m5 versus MA1120.1 (SOX13); m=4/18; ncol2=11; w=11; offset=0; strand=D; shift=7; score=0.795842; -------raACAATGgmw ; cor=; Ncor= a 0 0 0 0 0 0 0 1539.0 1795.0 4451.0 55.0 4329.0 4390.0 156.0 585.0 778.0 1228.0 1228.0 c 0 0 0 0 0 0 0 663.0 958.0 22.0 4276.0 55.0 48.0 77.0 57.0 647.0 1257.0 1126.0 g 0 0 0 0 0 0 0 1395.0 1049.0 40.0 60.0 50.0 63.0 28.0 3837.0 2666.0 1074.0 1046.0 t 0 0 0 0 0 0 0 955.0 750.0 39.0 161.0 118.0 51.0 4291.0 73.0 461.0 993.0 1152.0
MA0514.1_rc_shift6 (Sox3_rc)				; positions_6nt_m5 versus MA0514.1_rc (Sox3_rc); m=5/18; ncol2=10; w=9; offset=-1; strand=R; shift=6; score=0.70454; ------rrrACAAAGG-- ; cor=; Ncor= a 0 0 0 0 0 0 989.0 1173.0 1115.0 2067.0 0.0 2067.0 2067.0 1805.0 515.0 250.0 0 0 c 0 0 0 0 0 0 382.0 22.0 254.0 0.0 1923.0 0.0 0.0 0.0 0.0 330.0 0 0 g 0 0 0 0 0 0 654.0 853.0 698.0 0.0 144.0 0.0 0.0 0.0 1552.0 1487.0 0 0 t 0 0 0 0 0 0 42.0 19.0 0.0 0.0 0.0 0.0 0.0 262.0 0.0 0.0 0 0
MA1603.1_shift6 (Dmrt1)				; positions_6nt_m5 versus MA1603.1 (Dmrt1); m=6/18; ncol2=13; w=11; offset=-1; strand=D; shift=6; score=0.674378; ------gwtACAAWGTaw ; cor=; Ncor= a 0 0 0 0 0 0 2593.0 7473.0 3915.0 17933.0 211.0 17489.0 15568.0 12433.0 727.0 547.0 10367.0 5909.0 c 0 0 0 0 0 0 1113.0 4222.0 1228.0 69.0 17633.0 110.0 482.0 205.0 185.0 161.0 1233.0 1333.0 g 0 0 0 0 0 0 12329.0 1246.0 918.0 82.0 139.0 104.0 456.0 322.0 17032.0 200.0 2521.0 4132.0 t 0 0 0 0 0 0 2260.0 5354.0 12234.0 211.0 312.0 592.0 1789.0 5335.0 351.0 17387.0 4174.0 6921.0
MA0515.1_rc_shift6 (Sox6_rc)				; positions_6nt_m5 versus MA0515.1_rc (Sox6_rc); m=7/18; ncol2=10; w=9; offset=-1; strand=R; shift=6; score=0.647712; ------rrrACAAwGg-- ; cor=; Ncor= a 0 0 0 0 0 0 128.0 133.0 129.0 249.0 0.0 249.0 249.0 88.0 28.0 56.0 0 0 c 0 0 0 0 0 0 31.0 0.0 5.0 0.0 249.0 0.0 0.0 0.0 0.0 50.0 0 0 g 0 0 0 0 0 0 76.0 112.0 115.0 0.0 0.0 0.0 0.0 0.0 221.0 139.0 0 0 t 0 0 0 0 0 0 14.0 4.0 0.0 0.0 0.0 0.0 0.0 161.0 0.0 4.0 0 0
MA1152.1_rc_shift6 (SOX15_rc)				; positions_6nt_m5 versus MA1152.1_rc (SOX15_rc); m=8/18; ncol2=10; w=9; offset=-1; strand=R; shift=6; score=0.626166; ------araACAAwrr-- ; cor=; Ncor= a 0 0 0 0 0 0 407.0 418.0 506.0 971.0 5.0 994.0 988.0 362.0 501.0 267.0 0 0 c 0 0 0 0 0 0 165.0 114.0 125.0 3.0 890.0 2.0 6.0 5.0 26.0 147.0 0 0 g 0 0 0 0 0 0 188.0 253.0 188.0 2.0 21.0 2.0 3.0 3.0 412.0 554.0 0 0 t 0 0 0 0 0 0 241.0 215.0 180.0 24.0 83.0 3.0 3.0 631.0 62.0 32.0 0 0
MA0769.2_rc_shift6 (TCF7_rc)				; positions_6nt_m5 versus MA0769.2_rc (TCF7_rc); m=9/18; ncol2=11; w=10; offset=-1; strand=R; shift=6; score=0.60771; ------aswTCAAAGrm- ; cor=; Ncor= a 0 0 0 0 0 0 7070.0 1982.0 8498.0 239.0 478.0 14489.0 14178.0 14556.0 157.0 4082.0 4335.0 0 c 0 0 0 0 0 0 1688.0 5325.0 1220.0 115.0 13972.0 83.0 266.0 67.0 206.0 3198.0 3981.0 0 g 0 0 0 0 0 0 2740.0 4774.0 855.0 63.0 278.0 62.0 248.0 125.0 14379.0 4604.0 3657.0 0 t 0 0 0 0 0 0 3496.0 2913.0 4421.0 14577.0 266.0 360.0 302.0 246.0 252.0 3110.0 3021.0 0
MA0078.1_rc_shift8 (Sox17_rc)				; positions_6nt_m5 versus MA0078.1_rc (Sox17_rc); m=10/18; ncol2=9; w=9; offset=1; strand=R; shift=8; score=0.585843; --------sACAATrdr- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 4.0 29.0 0.0 31.0 30.0 1.0 9.0 11.0 9.0 0 c 0 0 0 0 0 0 0 0 10.0 2.0 31.0 0.0 0.0 0.0 1.0 4.0 6.0 0 g 0 0 0 0 0 0 0 0 17.0 0.0 0.0 0.0 1.0 0.0 18.0 8.0 9.0 0 t 0 0 0 0 0 0 0 0 0.0 0.0 0.0 0.0 0.0 30.0 3.0 8.0 7.0 0
MA0077.1_rc_shift7 (SOX9_rc)				; positions_6nt_m5 versus MA0077.1_rc (SOX9_rc); m=11/18; ncol2=9; w=9; offset=0; strand=R; shift=7; score=0.584339; -------rAACAATrG-- ; cor=; Ncor= a 0 0 0 0 0 0 0 24.0 54.0 59.0 0.0 65.0 71.0 4.0 24.0 9.0 0 0 c 0 0 0 0 0 0 0 7.0 6.0 4.0 72.0 4.0 2.0 0.0 6.0 9.0 0 0 g 0 0 0 0 0 0 0 31.0 7.0 0.0 2.0 0.0 1.0 1.0 38.0 55.0 0 0 t 0 0 0 0 0 0 0 14.0 9.0 13.0 2.0 7.0 2.0 71.0 8.0 3.0 0 0
MA0868.2_shift6 (SOX8)				; positions_6nt_m5 versus MA0868.2 (SOX8); m=12/18; ncol2=10; w=9; offset=-1; strand=D; shift=6; score=0.564306; ------agAACAATrg-- ; cor=; Ncor= a 0 0 0 0 0 0 1827.0 740.0 1827.0 1827.0 3.0 1827.0 1827.0 273.0 1356.0 300.0 0 0 c 0 0 0 0 0 0 1124.0 414.0 151.0 0.0 1827.0 0.0 43.0 36.0 208.0 421.0 0 0 g 0 0 0 0 0 0 854.0 1827.0 263.0 0.0 35.0 0.0 0.0 20.0 1827.0 912.0 0 0 t 0 0 0 0 0 0 724.0 571.0 222.0 45.0 70.0 16.0 36.0 1827.0 287.0 193.0 0 0
MA0523.1_shift4 (TCF7L2)				; positions_6nt_m5 versus MA0523.1 (TCF7L2); m=13/18; ncol2=14; w=11; offset=-3; strand=D; shift=4; score=0.552001; ----rrAswTCAAAGgva ; cor=; Ncor= a 0 0 0 0 1525.0 1808.0 3070.0 85.0 2795.0 138.0 155.0 4188.0 4103.0 4169.0 303.0 1035.0 1398.0 1782.0 c 0 0 0 0 756.0 840.0 136.0 1947.0 26.0 0.0 3304.0 0.0 15.0 0.0 37.0 849.0 1123.0 826.0 g 0 0 0 0 1140.0 1153.0 559.0 2008.0 0.0 0.0 729.0 0.0 70.0 19.0 3848.0 2008.0 1210.0 757.0 t 0 0 0 0 767.0 387.0 423.0 148.0 1367.0 4050.0 0.0 0.0 0.0 0.0 0.0 296.0 457.0 823.0
MA1563.1_shift8 (SOX18)				; positions_6nt_m5 versus MA1563.1 (SOX18); m=14/18; ncol2=8; w=8; offset=1; strand=D; shift=8; score=0.520403; --------vACaAyGs-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 153.0 589.0 0.0 589.0 589.0 0.0 188.0 116.0 0 0 c 0 0 0 0 0 0 0 0 216.0 33.0 589.0 139.0 104.0 374.0 0.0 287.0 0 0 g 0 0 0 0 0 0 0 0 168.0 140.0 0.0 216.0 67.0 0.0 589.0 190.0 0 0 t 0 0 0 0 0 0 0 0 52.0 94.0 0.0 27.0 14.0 589.0 0.0 0.0 0 0
MA1421.1_shift4 (TCF7L1)				; positions_6nt_m5 versus MA1421.1 (TCF7L1); m=15/18; ncol2=12; w=9; offset=-3; strand=D; shift=4; score=0.460051; ----AAAGATCAAAGG-- ; cor=; Ncor= a 0 0 0 0 109.0 159.0 159.0 0.0 159.0 0.0 5.0 159.0 159.0 159.0 0.0 28.0 0 0 c 0 0 0 0 20.0 7.0 0.0 33.0 9.0 6.0 159.0 2.0 0.0 0.0 9.0 9.0 0 0 g 0 0 0 0 6.0 30.0 0.0 126.0 13.0 9.0 0.0 1.0 0.0 2.0 159.0 113.0 0 0 t 0 0 0 0 24.0 7.0 5.0 6.0 18.0 159.0 0.0 0.0 0.0 0.0 5.0 9.0 0 0
MA0084.1_shift5 (SRY)				; positions_6nt_m5 versus MA0084.1 (SRY); m=16/18; ncol2=9; w=7; offset=-2; strand=D; shift=5; score=0.448424; -----kwwaACAAw---- ; cor=; Ncor= a 0 0 0 0 0 5.0 8.0 15.0 18.0 25.0 0.0 28.0 27.0 7.0 0 0 0 0 c 0 0 0 0 0 5.0 3.0 0.0 3.0 0.0 26.0 0.0 0.0 0.0 0 0 0 0 g 0 0 0 0 0 10.0 4.0 3.0 3.0 0.0 0.0 0.0 1.0 2.0 0 0 0 0 t 0 0 0 0 0 8.0 13.0 10.0 4.0 3.0 2.0 0.0 0.0 19.0 0 0 0 0
MA0087.1_rc_shift7 (Sox5_rc)				; positions_6nt_m5 versus MA0087.1_rc (Sox5_rc); m=17/18; ncol2=7; w=7; offset=0; strand=R; shift=7; score=0.448344; -------wAACAAT---- ; cor=; Ncor= a 0 0 0 0 0 0 0 8.0 21.0 22.0 0.0 23.0 22.0 0.0 0 0 0 0 c 0 0 0 0 0 0 0 4.0 0.0 0.0 22.0 0.0 1.0 0.0 0 0 0 0 g 0 0 0 0 0 0 0 3.0 1.0 1.0 0.0 0.0 0.0 0.0 0 0 0 0 t 0 0 0 0 0 0 0 8.0 1.0 0.0 1.0 0.0 0.0 23.0 0 0 0 0
MA0851.1_shift0 (Foxj3)				; positions_6nt_m5 versus MA0851.1 (Foxj3); m=18/18; ncol2=17; w=10; offset=-7; strand=D; shift=0; score= 0.4005; hraarRTAAACAAwsmc- ; cor=; Ncor= a 27.0 34.0 48.0 51.0 35.0 30.0 1.0 91.0 96.0 99.0 0.0 99.0 79.0 57.0 22.0 27.0 24.0 0 c 26.0 13.0 19.0 13.0 13.0 1.0 2.0 8.0 2.0 0.0 81.0 0.0 7.0 9.0 34.0 27.0 39.0 0 g 21.0 31.0 16.0 17.0 33.0 68.0 0.0 0.0 0.0 0.0 0.0 0.0 6.0 7.0 26.0 24.0 17.0 0 t 26.0 22.0 17.0 19.0 20.0 0.0 97.0 0.0 3.0 1.0 18.0 1.0 9.0 27.0 18.0 22.0 19.0 0