compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2021/02/16/peak-motifs.2021-02-16.144431_2021-02-16.144431_tXA9Xd/results/discovered_motifs/positions_6nt_m5/peak-motifs_positions_6nt_m5.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2021/02/16/peak-motifs.2021-02-16.144431_2021-02-16.144431_tXA9Xd/results/discovered_motifs/positions_6nt_m5/peak-motifs_positions_6nt_m5_vs_db_jaspar_core_nonredundant_vertebrates Program version 1.118 Quick mode Input files file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf file1 $RSAT/public_html/tmp/www-data/2021/02/16/peak-motifs.2021-02-16.144431_2021-02-16.144431_tXA9Xd/results/discovered_motifs/positions_6nt_m5/peak-motifs_positions_6nt_m5.tf Output files alignments_1ton $RSAT/public_html/tmp/www-data/2021/02/16/peak-motifs.2021-02-16.144431_2021-02-16.144431_tXA9Xd/results/discovered_motifs/positions_6nt_m5/peak-motifs_positions_6nt_m5_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab match_table_txt $RSAT/public_html/tmp/www-data/2021/02/16/peak-motifs.2021-02-16.144431_2021-02-16.144431_tXA9Xd/results/discovered_motifs/positions_6nt_m5/peak-motifs_positions_6nt_m5_vs_db_jaspar_core_nonredundant_vertebrates.tab html_index $RSAT/public_html/tmp/www-data/2021/02/16/peak-motifs.2021-02-16.144431_2021-02-16.144431_tXA9Xd/results/discovered_motifs/positions_6nt_m5/peak-motifs_positions_6nt_m5_vs_db_jaspar_core_nonredundant_vertebrates_index.html alignments_1ton_html $RSAT/public_html/tmp/www-data/2021/02/16/peak-motifs.2021-02-16.144431_2021-02-16.144431_tXA9Xd/results/discovered_motifs/positions_6nt_m5/peak-motifs_positions_6nt_m5_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html match_table_html $RSAT/public_html/tmp/www-data/2021/02/16/peak-motifs.2021-02-16.144431_2021-02-16.144431_tXA9Xd/results/discovered_motifs/positions_6nt_m5/peak-motifs_positions_6nt_m5_vs_db_jaspar_core_nonredundant_vertebrates.html prefix $RSAT/public_html/tmp/www-data/2021/02/16/peak-motifs.2021-02-16.144431_2021-02-16.144431_tXA9Xd/results/discovered_motifs/positions_6nt_m5/peak-motifs_positions_6nt_m5_vs_db_jaspar_core_nonredundant_vertebrates Matrices file1 1 matrices $RSAT/public_html/tmp/www-data/2021/02/16/peak-motifs.2021-02-16.144431_2021-02-16.144431_tXA9Xd/results/discovered_motifs/positions_6nt_m5/peak-motifs_positions_6nt_m5.tf file1 1 11 1031 file2 746 matrices $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf file2 1 6 24 file2 2 17 100 file2 3 10 9897 file2 4 17 101 file2 5 17 3851 file2 6 10 25318 file2 7 6 27 file2 8 11 1001 file2 9 14 101 file2 10 6 20 file2 11 8 104 ... 736 more matrices Column content 1 id1 Identifier of the first matrix 2 id2 Identifier of the second matrix 3 name1 Name of the first matrix 4 name2 Name of the second matrix 5 cor Pearson coefficient of correlation between frequency matrices 6 Ncor Normalized correlation. Ncor = cor * Wr 7 w1 Width of the first matrix 8 w2 Width of the second matrix 9 w Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset) 10 W Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w 11 Wr Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W 12 wr1 Alignment length relative to the width of the first matrix. wr1 = w/w1 13 wr2 Alignment length relative to the width of the second matrix. wr2 = w/w2 14 strand "strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct; R=reverse) 15 offset shift of the second matrix relative to the first matrix (negative:left; positive: right)
| id1 | id2 | name1 | name2 | cor | Ncor | w1 | w2 | w | W | Wr | wr1 | wr2 | strand | offset |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| positions_6nt_m5 | MA0867.2 | positions_6nt_m5 | SOX4 | 0.941 | 0.855 | 11 | 10 | 10 | 11 | 0.9091 | 0.9091 | 1.0000 | D | 0 |
| positions_6nt_m5 | MA0442.2 | positions_6nt_m5 | SOX10 | 0.971 | 0.809 | 11 | 11 | 10 | 12 | 0.8333 | 0.9091 | 0.9091 | D | -1 |
| positions_6nt_m5 | MA0143.4 | positions_6nt_m5 | SOX2 | 0.807 | 0.807 | 11 | 11 | 11 | 11 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| positions_6nt_m5 | MA1120.1 | positions_6nt_m5 | SOX13 | 0.796 | 0.796 | 11 | 11 | 11 | 11 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| positions_6nt_m5 | MA0514.1 | positions_6nt_m5 | Sox3 | 0.939 | 0.705 | 11 | 10 | 9 | 12 | 0.7500 | 0.8182 | 0.9000 | R | -1 |
| positions_6nt_m5 | MA1603.1 | positions_6nt_m5 | Dmrt1 | 0.797 | 0.674 | 11 | 13 | 11 | 13 | 0.8462 | 1.0000 | 0.8462 | D | -1 |
| positions_6nt_m5 | MA0515.1 | positions_6nt_m5 | Sox6 | 0.864 | 0.648 | 11 | 10 | 9 | 12 | 0.7500 | 0.8182 | 0.9000 | R | -1 |
| positions_6nt_m5 | MA1152.1 | positions_6nt_m5 | SOX15 | 0.835 | 0.626 | 11 | 10 | 9 | 12 | 0.7500 | 0.8182 | 0.9000 | R | -1 |
| positions_6nt_m5 | MA0769.2 | positions_6nt_m5 | TCF7 | 0.729 | 0.608 | 11 | 11 | 10 | 12 | 0.8333 | 0.9091 | 0.9091 | R | -1 |
| positions_6nt_m5 | MA0078.1 | positions_6nt_m5 | Sox17 | 0.716 | 0.586 | 11 | 9 | 9 | 11 | 0.8182 | 0.8182 | 1.0000 | R | 1 |
| positions_6nt_m5 | MA0077.1 | positions_6nt_m5 | SOX9 | 0.714 | 0.584 | 11 | 9 | 9 | 11 | 0.8182 | 0.8182 | 1.0000 | R | 0 |
| positions_6nt_m5 | MA0868.2 | positions_6nt_m5 | SOX8 | 0.752 | 0.564 | 11 | 10 | 9 | 12 | 0.7500 | 0.8182 | 0.9000 | D | -1 |
| positions_6nt_m5 | MA0523.1 | positions_6nt_m5 | TCF7L2 | 0.703 | 0.552 | 11 | 14 | 11 | 14 | 0.7857 | 1.0000 | 0.7857 | D | -3 |
| positions_6nt_m5 | MA1563.1 | positions_6nt_m5 | SOX18 | 0.716 | 0.520 | 11 | 8 | 8 | 11 | 0.7273 | 0.7273 | 1.0000 | D | 1 |
| positions_6nt_m5 | MA1421.1 | positions_6nt_m5 | TCF7L1 | 0.716 | 0.460 | 11 | 12 | 9 | 14 | 0.6429 | 0.8182 | 0.7500 | D | -3 |
| positions_6nt_m5 | MA0084.1 | positions_6nt_m5 | SRY | 0.833 | 0.448 | 11 | 9 | 7 | 13 | 0.5385 | 0.6364 | 0.7778 | D | -2 |
| positions_6nt_m5 | MA0087.1 | positions_6nt_m5 | Sox5 | 0.705 | 0.448 | 11 | 7 | 7 | 11 | 0.6364 | 0.6364 | 1.0000 | R | 0 |
| positions_6nt_m5 | MA0851.1 | positions_6nt_m5 | Foxj3 | 0.721 | 0.401 | 11 | 17 | 10 | 18 | 0.5556 | 0.9091 | 0.5882 | D | -7 |
Host name pedagogix Job started 2021-02-16.145443 Job done 2021-02-16.145506 Seconds 3.69 user 3.69 system 0.49 cuser 18.27 ; csystem 1.1