One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2021/02/16/peak-motifs.2021-02-16.144431_2021-02-16.144431_tXA9Xd/results/discovered_motifs/oligos_7nt_mkv4_m4/peak-motifs_oligos_7nt_mkv4_m4.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2021/02/16/peak-motifs.2021-02-16.144431_2021-02-16.144431_tXA9Xd/results/discovered_motifs/oligos_7nt_mkv4_m4/peak-motifs_oligos_7nt_mkv4_m4_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv4_m4_shift3 ; 22 matrices ; sort_field=Ncor

Matrix nameAligned logoscor Ncor Aligned matrices
oligos_7nt_mkv4_m4_shift3 (oligos_7nt_mkv4_m4)     
; oligos_7nt_mkv4_m4; m=0 (reference); ncol1=15; shift=3; ncol=18; ---ttTGCATrACAAwrg
; Alignment reference
a	0	0	0	94	150	122	79	51	653	22	182	633	28	641	643	222	203	170
c	0	0	0	81	150	40	44	610	10	2	63	18	548	18	15	39	75	148
g	0	0	0	59	84	30	528	14	11	10	379	6	60	7	17	34	328	283
t	0	0	0	451	301	493	34	10	11	651	61	28	49	19	10	390	79	84
MA0142.1_rc_shift2 (Pou5f1::Sox2_rc) 
; oligos_7nt_mkv4_m4 versus MA0142.1_rc (Pou5f1::Sox2_rc); m=1/21; ncol2=15; w=14; offset=-1; strand=R; shift=2; score=0.829371; --aTtTGCATrwsAAwr-
; cor=; Ncor=
a	0	0	837.0	53.0	92.0	269.0	196.0	104.0	1332.0	80.0	612.0	907.0	63.0	1231.0	1270.0	701.0	389.0	0
c	0	0	207.0	75.0	315.0	30.0	129.0	1239.0	15.0	24.0	186.0	29.0	825.0	79.0	36.0	28.0	66.0	0
g	0	0	119.0	33.0	68.0	16.0	1029.0	16.0	5.0	30.0	365.0	18.0	363.0	12.0	50.0	58.0	846.0	0
t	0	0	198.0	1200.0	887.0	1050.0	14.0	10.0	17.0	1235.0	206.0	415.0	118.0	47.0	11.0	579.0	63.0	0
MA1152.1_rc_shift8 (SOX15_rc) 
; oligos_7nt_mkv4_m4 versus MA1152.1_rc (SOX15_rc); m=2/21; ncol2=10; w=10; offset=5; strand=R; shift=8; score=0.536734; --------araACAAwrr
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	407.0	418.0	506.0	971.0	5.0	994.0	988.0	362.0	501.0	267.0
c	0	0	0	0	0	0	0	0	165.0	114.0	125.0	3.0	890.0	2.0	6.0	5.0	26.0	147.0
g	0	0	0	0	0	0	0	0	188.0	253.0	188.0	2.0	21.0	2.0	3.0	3.0	412.0	554.0
t	0	0	0	0	0	0	0	0	241.0	215.0	180.0	24.0	83.0	3.0	3.0	631.0	62.0	32.0
MA0515.1_rc_shift8 (Sox6_rc) 
; oligos_7nt_mkv4_m4 versus MA0515.1_rc (Sox6_rc); m=3/21; ncol2=10; w=10; offset=5; strand=R; shift=8; score=0.510672; --------rrrACAAwGg
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	128.0	133.0	129.0	249.0	0.0	249.0	249.0	88.0	28.0	56.0
c	0	0	0	0	0	0	0	0	31.0	0.0	5.0	0.0	249.0	0.0	0.0	0.0	0.0	50.0
g	0	0	0	0	0	0	0	0	76.0	112.0	115.0	0.0	0.0	0.0	0.0	0.0	221.0	139.0
t	0	0	0	0	0	0	0	0	14.0	4.0	0.0	0.0	0.0	0.0	0.0	161.0	0.0	4.0
MA0868.2_shift8 (SOX8) 
; oligos_7nt_mkv4_m4 versus MA0868.2 (SOX8); m=4/21; ncol2=10; w=10; offset=5; strand=D; shift=8; score=0.50504; --------agAACAATrg
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	1827.0	740.0	1827.0	1827.0	3.0	1827.0	1827.0	273.0	1356.0	300.0
c	0	0	0	0	0	0	0	0	1124.0	414.0	151.0	0.0	1827.0	0.0	43.0	36.0	208.0	421.0
g	0	0	0	0	0	0	0	0	854.0	1827.0	263.0	0.0	35.0	0.0	0.0	20.0	1827.0	912.0
t	0	0	0	0	0	0	0	0	724.0	571.0	222.0	45.0	70.0	16.0	36.0	1827.0	287.0	193.0
MA0078.1_rc_shift10 (Sox17_rc) 
; oligos_7nt_mkv4_m4 versus MA0078.1_rc (Sox17_rc); m=5/21; ncol2=9; w=8; offset=7; strand=R; shift=10; score=0.471455; ----------sACAATrd
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	0	4.0	29.0	0.0	31.0	30.0	1.0	9.0	11.0
c	0	0	0	0	0	0	0	0	0	0	10.0	2.0	31.0	0.0	0.0	0.0	1.0	4.0
g	0	0	0	0	0	0	0	0	0	0	17.0	0.0	0.0	0.0	1.0	0.0	18.0	8.0
t	0	0	0	0	0	0	0	0	0	0	0.0	0.0	0.0	0.0	0.0	30.0	3.0	8.0
MA0514.1_rc_shift8 (Sox3_rc) 
; oligos_7nt_mkv4_m4 versus MA0514.1_rc (Sox3_rc); m=6/21; ncol2=10; w=10; offset=5; strand=R; shift=8; score=0.468838; --------rrrACAAAGG
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	989.0	1173.0	1115.0	2067.0	0.0	2067.0	2067.0	1805.0	515.0	250.0
c	0	0	0	0	0	0	0	0	382.0	22.0	254.0	0.0	1923.0	0.0	0.0	0.0	0.0	330.0
g	0	0	0	0	0	0	0	0	654.0	853.0	698.0	0.0	144.0	0.0	0.0	0.0	1552.0	1487.0
t	0	0	0	0	0	0	0	0	42.0	19.0	0.0	0.0	0.0	0.0	0.0	262.0	0.0	0.0
MA1115.1_rc_shift1 (POU5F1_rc) 
; oligos_7nt_mkv4_m4 versus MA1115.1_rc (POU5F1_rc); m=7/21; ncol2=11; w=9; offset=-2; strand=R; shift=1; score=0.464036; -haTTTGCATww------
; cor=; Ncor=
a	0	3637.0	6383.0	307.0	838.0	1108.0	1723.0	634.0	12834.0	70.0	4818.0	4846.0	0	0	0	0	0	0
c	0	3551.0	2071.0	257.0	1026.0	118.0	548.0	11571.0	67.0	229.0	1908.0	1996.0	0	0	0	0	0	0
g	0	2450.0	2104.0	270.0	690.0	132.0	10310.0	192.0	130.0	122.0	2785.0	1290.0	0	0	0	0	0	0
t	0	3476.0	2556.0	12280.0	10560.0	11756.0	533.0	717.0	83.0	12693.0	3603.0	4982.0	0	0	0	0	0	0
MA0025.2_rc_shift1 (NFIL3_rc) 
; oligos_7nt_mkv4_m4 versus MA0025.2_rc (NFIL3_rc); m=8/21; ncol2=13; w=11; offset=-2; strand=R; shift=1; score=0.455925; -wtaTTrCATAAyw----
; cor=; Ncor=
a	0	6893.0	5543.0	13143.0	474.0	434.0	9180.0	610.0	20334.0	433.0	20606.0	20927.0	2798.0	7109.0	0	0	0	0
c	0	4482.0	4152.0	2701.0	360.0	171.0	454.0	20459.0	492.0	990.0	1714.0	518.0	7261.0	5615.0	0	0	0	0
g	0	4929.0	5630.0	4959.0	251.0	543.0	12004.0	467.0	1511.0	220.0	208.0	681.0	3896.0	3904.0	0	0	0	0
t	0	6692.0	7671.0	2193.0	21911.0	21848.0	1358.0	1460.0	659.0	21353.0	468.0	870.0	9041.0	6368.0	0	0	0	0
MA0077.1_rc_shift9 (SOX9_rc) 
; oligos_7nt_mkv4_m4 versus MA0077.1_rc (SOX9_rc); m=9/21; ncol2=9; w=9; offset=6; strand=R; shift=9; score=0.455899; ---------rAACAATrG
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	24.0	54.0	59.0	0.0	65.0	71.0	4.0	24.0	9.0
c	0	0	0	0	0	0	0	0	0	7.0	6.0	4.0	72.0	4.0	2.0	0.0	6.0	9.0
g	0	0	0	0	0	0	0	0	0	31.0	7.0	0.0	2.0	0.0	1.0	1.0	38.0	55.0
t	0	0	0	0	0	0	0	0	0	14.0	9.0	13.0	2.0	7.0	2.0	71.0	8.0	3.0
MA0867.2_shift9 (SOX4) 
; oligos_7nt_mkv4_m4 versus MA0867.2 (SOX4); m=10/21; ncol2=10; w=9; offset=6; strand=D; shift=9; score=0.451638; ---------gaACAAwGr
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	3190.0	5582.0	5582.0	0.0	5582.0	5582.0	5582.0	1018.0	2093.0
c	0	0	0	0	0	0	0	0	0	1771.0	951.0	0.0	5582.0	1.0	6.0	120.0	64.0	1422.0
g	0	0	0	0	0	0	0	0	0	5582.0	2047.0	0.0	37.0	6.0	11.0	50.0	5582.0	3489.0
t	0	0	0	0	0	0	0	0	0	2286.0	431.0	9.0	33.0	0.0	0.0	2719.0	83.0	174.0
MA0785.1_rc_shift1 (POU2F1_rc) 
; oligos_7nt_mkv4_m4 versus MA0785.1_rc (POU2F1_rc); m=11/21; ncol2=12; w=10; offset=-2; strand=R; shift=1; score=0.443616; -aATTwgCATAwt-----
; cor=; Ncor=
a	0	4262.0	10582.0	158.0	787.0	3651.0	3375.0	1326.0	10582.0	43.0	10582.0	5231.0	2075.0	0	0	0	0	0
c	0	2504.0	755.0	51.0	879.0	46.0	1351.0	10582.0	213.0	29.0	474.0	2142.0	1494.0	0	0	0	0	0
g	0	1840.0	457.0	37.0	108.0	33.0	10582.0	82.0	501.0	12.0	1347.0	1046.0	1938.0	0	0	0	0	0
t	0	1976.0	1422.0	10582.0	10582.0	6932.0	300.0	186.0	153.0	10582.0	756.0	5351.0	5076.0	0	0	0	0	0
MA0792.1_rc_shift2 (POU5F1B_rc) 
; oligos_7nt_mkv4_m4 versus MA0792.1_rc (POU5F1B_rc); m=12/21; ncol2=9; w=8; offset=-1; strand=R; shift=2; score=0.442936; --ATTwrCATA-------
; cor=; Ncor=
a	0	0	9519.0	203.0	896.0	3220.0	3828.0	1790.0	9519.0	84.0	9519.0	0	0	0	0	0	0	0
c	0	0	750.0	97.0	856.0	65.0	1293.0	9519.0	206.0	67.0	808.0	0	0	0	0	0	0	0
g	0	0	537.0	65.0	144.0	51.0	9519.0	94.0	364.0	21.0	1778.0	0	0	0	0	0	0	0
t	0	0	1559.0	9519.0	9519.0	6299.0	398.0	322.0	171.0	9519.0	1326.0	0	0	0	0	0	0	0
MA0143.4_shift9 (SOX2) 
; oligos_7nt_mkv4_m4 versus MA0143.4 (SOX2); m=13/21; ncol2=11; w=9; offset=6; strand=D; shift=9; score=0.438138; ---------wwACAATGg
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	29105.0	30279.0	83515.0	1307.0	81587.0	80825.0	4815.0	9926.0	14772.0
c	0	0	0	0	0	0	0	0	0	11041.0	15154.0	436.0	78356.0	1205.0	1742.0	732.0	800.0	6264.0
g	0	0	0	0	0	0	0	0	0	21434.0	17157.0	418.0	1243.0	550.0	2002.0	930.0	73372.0	54414.0
t	0	0	0	0	0	0	0	0	0	24174.0	23164.0	1385.0	4848.0	2412.0	1185.0	79277.0	1656.0	10304.0
MA1563.1_shift10 (SOX18) 
; oligos_7nt_mkv4_m4 versus MA1563.1 (SOX18); m=14/21; ncol2=8; w=8; offset=7; strand=D; shift=10; score=0.437957; ----------vACaAyGs
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	0	153.0	589.0	0.0	589.0	589.0	0.0	188.0	116.0
c	0	0	0	0	0	0	0	0	0	0	216.0	33.0	589.0	139.0	104.0	374.0	0.0	287.0
g	0	0	0	0	0	0	0	0	0	0	168.0	140.0	0.0	216.0	67.0	0.0	589.0	190.0
t	0	0	0	0	0	0	0	0	0	0	52.0	94.0	0.0	27.0	14.0	589.0	0.0	0.0
MA1120.1_shift9 (SOX13) 
; oligos_7nt_mkv4_m4 versus MA1120.1 (SOX13); m=15/21; ncol2=11; w=9; offset=6; strand=D; shift=9; score=0.432771; ---------raACAATGg
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	1539.0	1795.0	4451.0	55.0	4329.0	4390.0	156.0	585.0	778.0
c	0	0	0	0	0	0	0	0	0	663.0	958.0	22.0	4276.0	55.0	48.0	77.0	57.0	647.0
g	0	0	0	0	0	0	0	0	0	1395.0	1049.0	40.0	60.0	50.0	63.0	28.0	3837.0	2666.0
t	0	0	0	0	0	0	0	0	0	955.0	750.0	39.0	161.0	118.0	51.0	4291.0	73.0	461.0
MA0789.1_rc_shift2 (POU3F4_rc) 
; oligos_7nt_mkv4_m4 versus MA0789.1_rc (POU3F4_rc); m=16/21; ncol2=9; w=8; offset=-1; strand=R; shift=2; score=0.432253; --ATTwGCATA-------
; cor=; Ncor=
a	0	0	11117.0	168.0	885.0	4670.0	2565.0	245.0	11117.0	26.0	11117.0	0	0	0	0	0	0	0
c	0	0	292.0	88.0	315.0	56.0	602.0	11117.0	24.0	68.0	136.0	0	0	0	0	0	0	0
g	0	0	247.0	47.0	332.0	10.0	11117.0	19.0	59.0	23.0	349.0	0	0	0	0	0	0	0
t	0	0	705.0	11117.0	11117.0	6447.0	136.0	53.0	59.0	11117.0	941.0	0	0	0	0	0	0	0
MA0627.2_rc_shift0 (POU2F3_rc) 
; oligos_7nt_mkv4_m4 versus MA0627.2_rc (POU2F3_rc); m=17/21; ncol2=13; w=10; offset=-3; strand=R; shift=0; score=0.425045; wwATTTGCATatw-----
; cor=; Ncor=
a	17245.0	15909.0	43338.0	330.0	3276.0	896.0	3716.0	2827.0	53366.0	931.0	37593.0	13775.0	16525.0	0	0	0	0	0
c	7941.0	13237.0	4098.0	233.0	804.0	138.0	1079.0	51971.0	1251.0	354.0	3029.0	8770.0	10722.0	0	0	0	0	0
g	11936.0	10595.0	3478.0	164.0	567.0	80.0	50288.0	251.0	322.0	194.0	6885.0	6824.0	11383.0	0	0	0	0	0
t	18907.0	16288.0	5115.0	55302.0	51382.0	54915.0	946.0	980.0	1090.0	54550.0	8522.0	26660.0	17399.0	0	0	0	0	0
MA0084.1_shift7 (SRY) 
; oligos_7nt_mkv4_m4 versus MA0084.1 (SRY); m=18/21; ncol2=9; w=9; offset=4; strand=D; shift=7; score=0.420649; -------kwwaACAAw--
; cor=; Ncor=
a	0	0	0	0	0	0	0	5.0	8.0	15.0	18.0	25.0	0.0	28.0	27.0	7.0	0	0
c	0	0	0	0	0	0	0	5.0	3.0	0.0	3.0	0.0	26.0	0.0	0.0	0.0	0	0
g	0	0	0	0	0	0	0	10.0	4.0	3.0	3.0	0.0	0.0	0.0	1.0	2.0	0	0
t	0	0	0	0	0	0	0	8.0	13.0	10.0	4.0	3.0	2.0	0.0	0.0	19.0	0	0
MA0786.1_rc_shift0 (POU3F1_rc) 
; oligos_7nt_mkv4_m4 versus MA0786.1_rc (POU3F1_rc); m=19/21; ncol2=12; w=9; offset=-3; strand=R; shift=0; score=0.417405; wmATTwrCATAw------
; cor=; Ncor=
a	961.0	1167.0	2471.0	63.0	284.0	1048.0	1119.0	232.0	2471.0	21.0	2471.0	1437.0	0	0	0	0	0	0
c	452.0	620.0	128.0	25.0	130.0	21.0	413.0	2471.0	21.0	26.0	128.0	322.0	0	0	0	0	0	0
g	478.0	302.0	95.0	20.0	103.0	1.0	2471.0	13.0	53.0	7.0	186.0	126.0	0	0	0	0	0	0
t	1510.0	382.0	259.0	2471.0	2471.0	1423.0	170.0	37.0	44.0	2471.0	505.0	1034.0	0	0	0	0	0	0
MA0788.1_rc_shift0 (POU3F3_rc) 
; oligos_7nt_mkv4_m4 versus MA0788.1_rc (POU3F3_rc); m=20/21; ncol2=13; w=10; offset=-3; strand=R; shift=0; score=0.41052; waATTwGCATAww-----
; cor=; Ncor=
a	542.0	1078.0	1078.0	14.0	79.0	572.0	343.0	86.0	1078.0	30.0	1078.0	637.0	290.0	0	0	0	0	0
c	115.0	237.0	12.0	15.0	77.0	1.0	118.0	1078.0	49.0	12.0	64.0	131.0	137.0	0	0	0	0	0
g	85.0	141.0	20.0	6.0	11.0	4.0	1078.0	10.0	33.0	11.0	57.0	41.0	75.0	0	0	0	0	0
t	536.0	240.0	53.0	1078.0	1078.0	506.0	28.0	22.0	25.0	1078.0	129.0	440.0	576.0	0	0	0	0	0
MA0787.1_rc_shift0 (POU3F2_rc) 
; oligos_7nt_mkv4_m4 versus MA0787.1_rc (POU3F2_rc); m=21/21; ncol2=12; w=9; offset=-3; strand=R; shift=0; score=0.405371; tmATTwGCATAw------
; cor=; Ncor=
a	562.0	840.0	1292.0	13.0	45.0	604.0	372.0	60.0	1292.0	0.0	1292.0	700.0	0	0	0	0	0	0
c	261.0	452.0	28.0	0.0	32.0	1.0	153.0	1292.0	12.0	25.0	40.0	171.0	0	0	0	0	0	0
g	262.0	165.0	19.0	6.0	16.0	4.0	1292.0	9.0	30.0	16.0	65.0	61.0	0	0	0	0	0	0
t	1292.0	137.0	63.0	1292.0	1292.0	688.0	68.0	19.0	28.0	1292.0	163.0	591.0	0	0	0	0	0	0