compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2021/02/16/peak-motifs.2021-02-16.144431_2021-02-16.144431_tXA9Xd/results/discovered_motifs/oligos_7nt_mkv4_m2/peak-motifs_oligos_7nt_mkv4_m2.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2021/02/16/peak-motifs.2021-02-16.144431_2021-02-16.144431_tXA9Xd/results/discovered_motifs/oligos_7nt_mkv4_m2/peak-motifs_oligos_7nt_mkv4_m2_vs_db_jaspar_core_nonredundant_vertebrates Program version 1.118 Quick mode Input files file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf file1 $RSAT/public_html/tmp/www-data/2021/02/16/peak-motifs.2021-02-16.144431_2021-02-16.144431_tXA9Xd/results/discovered_motifs/oligos_7nt_mkv4_m2/peak-motifs_oligos_7nt_mkv4_m2.tf Output files alignments_1ton $RSAT/public_html/tmp/www-data/2021/02/16/peak-motifs.2021-02-16.144431_2021-02-16.144431_tXA9Xd/results/discovered_motifs/oligos_7nt_mkv4_m2/peak-motifs_oligos_7nt_mkv4_m2_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab match_table_txt $RSAT/public_html/tmp/www-data/2021/02/16/peak-motifs.2021-02-16.144431_2021-02-16.144431_tXA9Xd/results/discovered_motifs/oligos_7nt_mkv4_m2/peak-motifs_oligos_7nt_mkv4_m2_vs_db_jaspar_core_nonredundant_vertebrates.tab html_index $RSAT/public_html/tmp/www-data/2021/02/16/peak-motifs.2021-02-16.144431_2021-02-16.144431_tXA9Xd/results/discovered_motifs/oligos_7nt_mkv4_m2/peak-motifs_oligos_7nt_mkv4_m2_vs_db_jaspar_core_nonredundant_vertebrates_index.html alignments_1ton_html $RSAT/public_html/tmp/www-data/2021/02/16/peak-motifs.2021-02-16.144431_2021-02-16.144431_tXA9Xd/results/discovered_motifs/oligos_7nt_mkv4_m2/peak-motifs_oligos_7nt_mkv4_m2_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html match_table_html $RSAT/public_html/tmp/www-data/2021/02/16/peak-motifs.2021-02-16.144431_2021-02-16.144431_tXA9Xd/results/discovered_motifs/oligos_7nt_mkv4_m2/peak-motifs_oligos_7nt_mkv4_m2_vs_db_jaspar_core_nonredundant_vertebrates.html prefix $RSAT/public_html/tmp/www-data/2021/02/16/peak-motifs.2021-02-16.144431_2021-02-16.144431_tXA9Xd/results/discovered_motifs/oligos_7nt_mkv4_m2/peak-motifs_oligos_7nt_mkv4_m2_vs_db_jaspar_core_nonredundant_vertebrates Matrices file1 1 matrices $RSAT/public_html/tmp/www-data/2021/02/16/peak-motifs.2021-02-16.144431_2021-02-16.144431_tXA9Xd/results/discovered_motifs/oligos_7nt_mkv4_m2/peak-motifs_oligos_7nt_mkv4_m2.tf file1 1 20 757 file2 746 matrices $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf file2 1 6 24 file2 2 17 100 file2 3 10 9897 file2 4 17 101 file2 5 17 3851 file2 6 10 25318 file2 7 6 27 file2 8 11 1001 file2 9 14 101 file2 10 6 20 file2 11 8 104 ... 736 more matrices Column content 1 id1 Identifier of the first matrix 2 id2 Identifier of the second matrix 3 name1 Name of the first matrix 4 name2 Name of the second matrix 5 cor Pearson coefficient of correlation between frequency matrices 6 Ncor Normalized correlation. Ncor = cor * Wr 7 w1 Width of the first matrix 8 w2 Width of the second matrix 9 w Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset) 10 W Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w 11 Wr Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W 12 wr1 Alignment length relative to the width of the first matrix. wr1 = w/w1 13 wr2 Alignment length relative to the width of the second matrix. wr2 = w/w2 14 strand "strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct; R=reverse) 15 offset shift of the second matrix relative to the first matrix (negative:left; positive: right)
| id1 | id2 | name1 | name2 | cor | Ncor | w1 | w2 | w | W | Wr | wr1 | wr2 | strand | offset |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| oligos_7nt_mkv4_m2 | MA0142.1 | oligos_7nt_mkv4_m2 | Pou5f1::Sox2 | 0.986 | 0.739 | 20 | 15 | 15 | 20 | 0.7500 | 0.7500 | 1.0000 | R | 4 |
| oligos_7nt_mkv4_m2 | MA0507.1 | oligos_7nt_mkv4_m2 | POU2F2 | 0.949 | 0.617 | 20 | 13 | 13 | 20 | 0.6500 | 0.6500 | 1.0000 | D | 1 |
| oligos_7nt_mkv4_m2 | MA0784.1 | oligos_7nt_mkv4_m2 | POU1F1 | 0.856 | 0.599 | 20 | 14 | 14 | 20 | 0.7000 | 0.7000 | 1.0000 | R | 1 |
| oligos_7nt_mkv4_m2 | MA0627.2 | oligos_7nt_mkv4_m2 | POU2F3 | 0.918 | 0.596 | 20 | 13 | 13 | 20 | 0.6500 | 0.6500 | 1.0000 | R | 2 |
| oligos_7nt_mkv4_m2 | MA0786.1 | oligos_7nt_mkv4_m2 | POU3F1 | 0.938 | 0.563 | 20 | 12 | 12 | 20 | 0.6000 | 0.6000 | 1.0000 | R | 2 |
| oligos_7nt_mkv4_m2 | MA0788.1 | oligos_7nt_mkv4_m2 | POU3F3 | 0.852 | 0.554 | 20 | 13 | 13 | 20 | 0.6500 | 0.6500 | 1.0000 | R | 2 |
| oligos_7nt_mkv4_m2 | MA0787.1 | oligos_7nt_mkv4_m2 | POU3F2 | 0.922 | 0.553 | 20 | 12 | 12 | 20 | 0.6000 | 0.6000 | 1.0000 | R | 2 |
| oligos_7nt_mkv4_m2 | MA0785.1 | oligos_7nt_mkv4_m2 | POU2F1 | 0.904 | 0.542 | 20 | 12 | 12 | 20 | 0.6000 | 0.6000 | 1.0000 | R | 3 |
| oligos_7nt_mkv4_m2 | MA1115.1 | oligos_7nt_mkv4_m2 | POU5F1 | 0.957 | 0.526 | 20 | 11 | 11 | 20 | 0.5500 | 0.5500 | 1.0000 | R | 3 |
| oligos_7nt_mkv4_m2 | MA0043.3 | oligos_7nt_mkv4_m2 | HLF | 0.732 | 0.512 | 20 | 14 | 14 | 20 | 0.7000 | 0.7000 | 1.0000 | R | 3 |
| oligos_7nt_mkv4_m2 | MA0025.2 | oligos_7nt_mkv4_m2 | NFIL3 | 0.748 | 0.486 | 20 | 13 | 13 | 20 | 0.6500 | 0.6500 | 1.0000 | R | 3 |
| oligos_7nt_mkv4_m2 | MA0792.1 | oligos_7nt_mkv4_m2 | POU5F1B | 0.975 | 0.439 | 20 | 9 | 9 | 20 | 0.4500 | 0.4500 | 1.0000 | R | 4 |
| oligos_7nt_mkv4_m2 | MA0789.1 | oligos_7nt_mkv4_m2 | POU3F4 | 0.964 | 0.434 | 20 | 9 | 9 | 20 | 0.4500 | 0.4500 | 1.0000 | R | 4 |
Host name pedagogix Job started 2021-02-16.145528 Job done 2021-02-16.145551 Seconds 4.63 user 4.63 system 0.45 cuser 18.4 ; csystem 0.9