One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2021/02/16/peak-motifs.2021-02-16.144431_2021-02-16.144431_tXA9Xd/results/discovered_motifs/oligos_6nt_mkv3_m5/peak-motifs_oligos_6nt_mkv3_m5.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2021/02/16/peak-motifs.2021-02-16.144431_2021-02-16.144431_tXA9Xd/results/discovered_motifs/oligos_6nt_mkv3_m5/peak-motifs_oligos_6nt_mkv3_m5_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv3_m5_shift5 ; 23 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv3_m5_shift5 (oligos_6nt_mkv3_m5)
; oligos_6nt_mkv3_m5; m=0 (reference); ncol1=14; shift=5; ncol=19; -----amaAAACAAAGcma ; Alignment reference a 0 0 0 0 0 265 218 421 586 628 671 13 688 646 649 124 171 263 273 c 0 0 0 0 0 119 225 95 25 34 9 643 10 30 16 62 335 187 152 g 0 0 0 0 0 178 148 95 24 29 28 32 8 25 24 492 127 139 151 t 0 0 0 0 0 155 126 106 82 26 9 29 11 16 28 39 84 128 141

MA0442.2_shift7 (SOX10)
; oligos_6nt_mkv3_m5 versus MA0442.2 (SOX10); m=1/22; ncol2=11; w=11; offset=2; strand=D; shift=7; score=0.719035; -------rraACAAAGvm- ; cor=; Ncor= a 0 0 0 0 0 0 0 683.0 723.0 1118.0 2023.0 3.0 2029.0 1968.0 1959.0 10.0 666.0 638.0 0 c 0 0 0 0 0 0 0 397.0 283.0 372.0 4.0 1989.0 7.0 28.0 23.0 13.0 552.0 555.0 0 g 0 0 0 0 0 0 0 527.0 571.0 317.0 3.0 11.0 7.0 20.0 12.0 2012.0 619.0 505.0 0 t 0 0 0 0 0 0 0 448.0 478.0 248.0 25.0 52.0 12.0 39.0 61.0 20.0 218.0 357.0 0

MA0514.1_rc_shift7 (Sox3_rc)
; oligos_6nt_mkv3_m5 versus MA0514.1_rc (Sox3_rc); m=2/22; ncol2=10; w=10; offset=2; strand=R; shift=7; score=0.638326; -------rrrACAAAGG-- ; cor=; Ncor= a 0 0 0 0 0 0 0 989.0 1173.0 1115.0 2067.0 0.0 2067.0 2067.0 1805.0 515.0 250.0 0 0 c 0 0 0 0 0 0 0 382.0 22.0 254.0 0.0 1923.0 0.0 0.0 0.0 0.0 330.0 0 0 g 0 0 0 0 0 0 0 654.0 853.0 698.0 0.0 144.0 0.0 0.0 0.0 1552.0 1487.0 0 0 t 0 0 0 0 0 0 0 42.0 19.0 0.0 0.0 0.0 0.0 0.0 262.0 0.0 0.0 0 0

MA0867.2_shift8 (SOX4)
; oligos_6nt_mkv3_m5 versus MA0867.2 (SOX4); m=3/22; ncol2=10; w=10; offset=3; strand=D; shift=8; score=0.628273; --------gaACAAwGrv- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 3190.0 5582.0 5582.0 0.0 5582.0 5582.0 5582.0 1018.0 2093.0 1775.0 0 c 0 0 0 0 0 0 0 0 1771.0 951.0 0.0 5582.0 1.0 6.0 120.0 64.0 1422.0 1438.0 0 g 0 0 0 0 0 0 0 0 5582.0 2047.0 0.0 37.0 6.0 11.0 50.0 5582.0 3489.0 1889.0 0 t 0 0 0 0 0 0 0 0 2286.0 431.0 9.0 33.0 0.0 0.0 2719.0 83.0 174.0 480.0 0

MA0515.1_rc_shift7 (Sox6_rc)
; oligos_6nt_mkv3_m5 versus MA0515.1_rc (Sox6_rc); m=4/22; ncol2=10; w=10; offset=2; strand=R; shift=7; score=0.587115; -------rrrACAAwGg-- ; cor=; Ncor= a 0 0 0 0 0 0 0 128.0 133.0 129.0 249.0 0.0 249.0 249.0 88.0 28.0 56.0 0 0 c 0 0 0 0 0 0 0 31.0 0.0 5.0 0.0 249.0 0.0 0.0 0.0 0.0 50.0 0 0 g 0 0 0 0 0 0 0 76.0 112.0 115.0 0.0 0.0 0.0 0.0 0.0 221.0 139.0 0 0 t 0 0 0 0 0 0 0 14.0 4.0 0.0 0.0 0.0 0.0 0.0 161.0 0.0 4.0 0 0

MA1152.1_rc_shift7 (SOX15_rc)
; oligos_6nt_mkv3_m5 versus MA1152.1_rc (SOX15_rc); m=5/22; ncol2=10; w=10; offset=2; strand=R; shift=7; score=0.578007; -------araACAAwrr-- ; cor=; Ncor= a 0 0 0 0 0 0 0 407.0 418.0 506.0 971.0 5.0 994.0 988.0 362.0 501.0 267.0 0 0 c 0 0 0 0 0 0 0 165.0 114.0 125.0 3.0 890.0 2.0 6.0 5.0 26.0 147.0 0 0 g 0 0 0 0 0 0 0 188.0 253.0 188.0 2.0 21.0 2.0 3.0 3.0 412.0 554.0 0 0 t 0 0 0 0 0 0 0 241.0 215.0 180.0 24.0 83.0 3.0 3.0 631.0 62.0 32.0 0 0

MA0851.1_shift1 (Foxj3)
; oligos_6nt_mkv3_m5 versus MA0851.1 (Foxj3); m=6/22; ncol2=17; w=13; offset=-4; strand=D; shift=1; score=0.565815; -hraarRTAAACAAwsmc- ; cor=; Ncor= a 0 27.0 34.0 48.0 51.0 35.0 30.0 1.0 91.0 96.0 99.0 0.0 99.0 79.0 57.0 22.0 27.0 24.0 0 c 0 26.0 13.0 19.0 13.0 13.0 1.0 2.0 8.0 2.0 0.0 81.0 0.0 7.0 9.0 34.0 27.0 39.0 0 g 0 21.0 31.0 16.0 17.0 33.0 68.0 0.0 0.0 0.0 0.0 0.0 0.0 6.0 7.0 26.0 24.0 17.0 0 t 0 26.0 22.0 17.0 19.0 20.0 0.0 97.0 0.0 3.0 1.0 18.0 1.0 9.0 27.0 18.0 22.0 19.0 0

MA0084.1_shift6 (SRY)
; oligos_6nt_mkv3_m5 versus MA0084.1 (SRY); m=7/22; ncol2=9; w=9; offset=1; strand=D; shift=6; score=0.530049; ------kwwaACAAw---- ; cor=; Ncor= a 0 0 0 0 0 0 5.0 8.0 15.0 18.0 25.0 0.0 28.0 27.0 7.0 0 0 0 0 c 0 0 0 0 0 0 5.0 3.0 0.0 3.0 0.0 26.0 0.0 0.0 0.0 0 0 0 0 g 0 0 0 0 0 0 10.0 4.0 3.0 3.0 0.0 0.0 0.0 1.0 2.0 0 0 0 0 t 0 0 0 0 0 0 8.0 13.0 10.0 4.0 3.0 2.0 0.0 0.0 19.0 0 0 0 0

MA1125.1_shift4 (ZNF384)
; oligos_6nt_mkv3_m5 versus MA1125.1 (ZNF384); m=8/22; ncol2=12; w=11; offset=-1; strand=D; shift=4; score=0.527177; ----wwwmAAAAAAaa--- ; cor=; Ncor= a 0 0 0 0 9460.0 9116.0 9522.0 13125.0 30354.0 30191.0 30072.0 30252.0 30202.0 30406.0 20322.0 18916.0 0 0 0 c 0 0 0 0 4945.0 7025.0 3456.0 7691.0 7.0 35.0 21.0 13.0 26.0 6.0 2908.0 3963.0 0 0 0 g 0 0 0 0 5650.0 5133.0 4678.0 4721.0 13.0 19.0 26.0 15.0 14.0 0.0 2767.0 2898.0 0 0 0 t 0 0 0 0 10378.0 9159.0 12777.0 4896.0 59.0 188.0 314.0 153.0 191.0 21.0 4436.0 4656.0 0 0 0

MA0868.2_shift7 (SOX8)
; oligos_6nt_mkv3_m5 versus MA0868.2 (SOX8); m=9/22; ncol2=10; w=10; offset=2; strand=D; shift=7; score=0.527117; -------agAACAATrg-- ; cor=; Ncor= a 0 0 0 0 0 0 0 1827.0 740.0 1827.0 1827.0 3.0 1827.0 1827.0 273.0 1356.0 300.0 0 0 c 0 0 0 0 0 0 0 1124.0 414.0 151.0 0.0 1827.0 0.0 43.0 36.0 208.0 421.0 0 0 g 0 0 0 0 0 0 0 854.0 1827.0 263.0 0.0 35.0 0.0 0.0 20.0 1827.0 912.0 0 0 t 0 0 0 0 0 0 0 724.0 571.0 222.0 45.0 70.0 16.0 36.0 1827.0 287.0 193.0 0 0

MA0593.1_shift4 (FOXP2)
; oligos_6nt_mkv3_m5 versus MA0593.1 (FOXP2); m=10/22; ncol2=11; w=10; offset=-1; strand=D; shift=4; score=0.506249; ----awGTAAACAra---- ; cor=; Ncor= a 0 0 0 0 330.0 340.0 160.0 59.0 766.0 766.0 766.0 0.0 766.0 297.0 332.0 0 0 0 0 c 0 0 0 0 113.0 7.0 0.0 0.0 0.0 0.0 0.0 757.0 0.0 154.0 124.0 0 0 0 0 g 0 0 0 0 190.0 142.0 606.0 0.0 0.0 0.0 0.0 0.0 0.0 293.0 184.0 0 0 0 0 t 0 0 0 0 133.0 277.0 0.0 707.0 0.0 0.0 0.0 9.0 0.0 22.0 126.0 0 0 0 0

MA1606.1_shift4 (Foxf1)
; oligos_6nt_mkv3_m5 versus MA1606.1 (Foxf1); m=11/22; ncol2=11; w=10; offset=-1; strand=D; shift=4; score=0.486528; ----awrTAAACAaa---- ; cor=; Ncor= a 0 0 0 0 23159.0 17275.0 18534.0 568.0 57293.0 53942.0 57167.0 437.0 56436.0 18673.0 20323.0 0 0 0 0 c 0 0 0 0 10753.0 7560.0 3754.0 446.0 899.0 2249.0 475.0 54394.0 745.0 12643.0 11715.0 0 0 0 0 g 0 0 0 0 12462.0 8287.0 33599.0 1158.0 445.0 811.0 1067.0 522.0 443.0 14294.0 12844.0 0 0 0 0 t 0 0 0 0 13166.0 26418.0 3653.0 57368.0 903.0 2538.0 831.0 4187.0 1916.0 13930.0 14658.0 0 0 0 0

MA0846.1_shift3 (FOXC2)
; oligos_6nt_mkv3_m5 versus MA0846.1 (FOXC2); m=12/22; ncol2=12; w=10; offset=-2; strand=D; shift=3; score=0.485664; ---wAwrTAAAYAww---- ; cor=; Ncor= a 0 0 0 8939.0 20456.0 11301.0 6418.0 2005.0 20456.0 20456.0 20456.0 31.0 20456.0 13296.0 10995.0 0 0 0 0 c 0 0 0 1279.0 1652.0 3476.0 440.0 3773.0 6759.0 344.0 105.0 14435.0 101.0 2087.0 3080.0 0 0 0 0 g 0 0 0 454.0 5093.0 3129.0 14038.0 321.0 87.0 81.0 279.0 68.0 328.0 1710.0 2649.0 0 0 0 0 t 0 0 0 11517.0 2080.0 9155.0 136.0 20456.0 122.0 107.0 242.0 6021.0 215.0 7160.0 9461.0 0 0 0 0

MA0614.1_shift6 (Foxj2)
; oligos_6nt_mkv3_m5 versus MA0614.1 (Foxj2); m=13/22; ncol2=8; w=8; offset=1; strand=D; shift=6; score=0.472946; ------rTAAACAa----- ; cor=; Ncor= a 0 0 0 0 0 0 461.0 50.0 795.0 977.0 999.0 0.0 999.0 593.0 0 0 0 0 0 c 0 0 0 0 0 0 0.0 25.0 205.0 0.0 0.0 954.0 0.0 125.0 0 0 0 0 0 g 0 0 0 0 0 0 538.0 0.0 0.0 0.0 0.0 0.0 0.0 125.0 0 0 0 0 0 t 0 0 0 0 0 0 0.0 924.0 0.0 22.0 0.0 46.0 0.0 156.0 0 0 0 0 0

MA1489.1_shift6 (FOXN3)
; oligos_6nt_mkv3_m5 versus MA1489.1 (FOXN3); m=14/22; ncol2=8; w=8; offset=1; strand=D; shift=6; score=0.463516; ------GTAAACAA----- ; cor=; Ncor= a 0 0 0 0 0 0 9.0 9.0 971.0 971.0 971.0 9.0 971.0 971.0 0 0 0 0 0 c 0 0 0 0 0 0 9.0 9.0 9.0 9.0 9.0 971.0 9.0 9.0 0 0 0 0 0 g 0 0 0 0 0 0 971.0 9.0 9.0 9.0 9.0 9.0 9.0 9.0 0 0 0 0 0 t 0 0 0 0 0 0 9.0 971.0 9.0 9.0 9.0 9.0 9.0 9.0 0 0 0 0 0

MA0613.1_shift6 (FOXG1)
; oligos_6nt_mkv3_m5 versus MA0613.1 (FOXG1); m=15/22; ncol2=8; w=8; offset=1; strand=D; shift=6; score=0.457121; ------rTAAACAw----- ; cor=; Ncor= a 0 0 0 0 0 0 374.0 1.0 997.0 997.0 997.0 1.0 997.0 498.0 0 0 0 0 0 c 0 0 0 0 0 0 1.0 1.0 1.0 1.0 1.0 997.0 1.0 167.0 0 0 0 0 0 g 0 0 0 0 0 0 623.0 1.0 1.0 1.0 1.0 1.0 1.0 2.0 0 0 0 0 0 t 0 0 0 0 0 0 1.0 997.0 1.0 1.0 1.0 1.0 1.0 333.0 0 0 0 0 0

MA0157.2_shift6 (FOXO3)
; oligos_6nt_mkv3_m5 versus MA0157.2 (FOXO3); m=16/22; ncol2=8; w=8; offset=1; strand=D; shift=6; score=0.436706; ------GTAAACAw----- ; cor=; Ncor= a 0 0 0 0 0 0 21.0 0.0 532.0 532.0 532.0 15.0 532.0 317.0 0 0 0 0 0 c 0 0 0 0 0 0 0.0 0.0 16.0 1.0 10.0 532.0 11.0 12.0 0 0 0 0 0 g 0 0 0 0 0 0 532.0 13.0 5.0 0.0 0.0 0.0 0.0 36.0 0 0 0 0 0 t 0 0 0 0 0 0 0.0 532.0 1.0 0.0 0.0 3.0 0.0 215.0 0 0 0 0 0

MA0031.1_shift6 (FOXD1)
; oligos_6nt_mkv3_m5 versus MA0031.1 (FOXD1); m=17/22; ncol2=8; w=8; offset=1; strand=D; shift=6; score=0.420545; ------GTAAACAw----- ; cor=; Ncor= a 0 0 0 0 0 0 1.0 0.0 19.0 20.0 18.0 1.0 20.0 7.0 0 0 0 0 0 c 0 0 0 0 0 0 1.0 0.0 1.0 0.0 1.0 18.0 0.0 2.0 0 0 0 0 0 g 0 0 0 0 0 0 17.0 0.0 0.0 0.0 1.0 0.0 0.0 3.0 0 0 0 0 0 t 0 0 0 0 0 0 1.0 20.0 0.0 0.0 0.0 1.0 0.0 8.0 0 0 0 0 0

MA1487.1_shift0 (FOXE1)
; oligos_6nt_mkv3_m5 versus MA1487.1 (FOXE1); m=18/22; ncol2=15; w=10; offset=-5; strand=D; shift=0; score=0.412536; cvyTAARyAAACAay---- ; cor=; Ncor= a 54.0 288.0 37.0 191.0 664.0 664.0 664.0 0.0 664.0 664.0 664.0 0.0 664.0 521.0 148.0 0 0 0 0 c 289.0 381.0 298.0 0.0 15.0 57.0 0.0 324.0 10.0 8.0 0.0 664.0 0.0 84.0 180.0 0 0 0 0 g 165.0 283.0 38.0 0.0 30.0 58.0 228.0 0.0 0.0 0.0 0.0 0.0 3.0 123.0 100.0 0 0 0 0 t 155.0 0.0 366.0 664.0 0.0 194.0 0.0 340.0 0.0 0.0 0.0 0.0 0.0 142.0 235.0 0 0 0 0

MA0850.1_shift6 (FOXP3)
; oligos_6nt_mkv3_m5 versus MA0850.1 (FOXP3); m=19/22; ncol2=7; w=7; offset=1; strand=D; shift=6; score=0.411593; ------rTAAACA------ ; cor=; Ncor= a 0 0 0 0 0 0 74.0 20.0 211.0 211.0 211.0 0.0 211.0 0 0 0 0 0 0 c 0 0 0 0 0 0 0.0 52.0 0.0 0.0 15.0 211.0 0.0 0 0 0 0 0 0 g 0 0 0 0 0 0 137.0 0.0 0.0 9.0 49.0 32.0 18.0 0 0 0 0 0 0 t 0 0 0 0 0 0 0.0 211.0 31.0 8.0 0.0 39.0 0.0 0 0 0 0 0 0

MA0033.2_shift6 (FOXL1)
; oligos_6nt_mkv3_m5 versus MA0033.2 (FOXL1); m=20/22; ncol2=7; w=7; offset=1; strand=D; shift=6; score=0.40967; ------rTAAACA------ ; cor=; Ncor= a 0 0 0 0 0 0 2102.0 10.0 4780.0 4780.0 4780.0 0.0 4780.0 0 0 0 0 0 0 c 0 0 0 0 0 0 13.0 416.0 628.0 38.0 82.0 3723.0 54.0 0 0 0 0 0 0 g 0 0 0 0 0 0 2678.0 0.0 57.0 0.0 50.0 0.0 0.0 0 0 0 0 0 0 t 0 0 0 0 0 0 140.0 4780.0 0.0 15.0 0.0 1057.0 17.0 0 0 0 0 0 0

MA0848.1_shift6 (FOXO4)
; oligos_6nt_mkv3_m5 versus MA0848.1 (FOXO4); m=21/22; ncol2=7; w=7; offset=1; strand=D; shift=6; score=0.404251; ------GTAAACA------ ; cor=; Ncor= a 0 0 0 0 0 0 1669.0 345.0 5378.0 5378.0 5378.0 58.0 5378.0 0 0 0 0 0 0 c 0 0 0 0 0 0 13.0 69.0 1259.0 146.0 0.0 5378.0 10.0 0 0 0 0 0 0 g 0 0 0 0 0 0 5378.0 123.0 32.0 19.0 90.0 33.0 10.0 0 0 0 0 0 0 t 0 0 0 0 0 0 0.0 5378.0 20.0 20.0 10.0 958.0 40.0 0 0 0 0 0 0

MA0030.1_shift1 (FOXF2)
; oligos_6nt_mkv3_m5 versus MA0030.1 (FOXF2); m=22/22; ncol2=14; w=10; offset=-4; strand=D; shift=1; score=0.404137; -bmaasRTAAACAaw---- ; cor=; Ncor= a 0 1.0 10.0 17.0 13.0 3.0 7.0 0.0 27.0 27.0 27.0 0.0 27.0 16.0 7.0 0 0 0 0 c 0 10.0 7.0 4.0 5.0 11.0 0.0 0.0 0.0 0.0 0.0 25.0 0.0 4.0 4.0 0 0 0 0 g 0 7.0 5.0 2.0 5.0 8.0 20.0 0.0 0.0 0.0 0.0 0.0 0.0 2.0 6.0 0 0 0 0 t 0 9.0 5.0 4.0 5.0 0.0 0.0 27.0 0.0 0.0 0.0 2.0 0.0 5.0 10.0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv3_m5_shift5 (oligos_6nt_mkv3_m5)				; oligos_6nt_mkv3_m5; m=0 (reference); ncol1=14; shift=5; ncol=19; -----amaAAACAAAGcma ; Alignment reference a 0 0 0 0 0 265 218 421 586 628 671 13 688 646 649 124 171 263 273 c 0 0 0 0 0 119 225 95 25 34 9 643 10 30 16 62 335 187 152 g 0 0 0 0 0 178 148 95 24 29 28 32 8 25 24 492 127 139 151 t 0 0 0 0 0 155 126 106 82 26 9 29 11 16 28 39 84 128 141
MA0442.2_shift7 (SOX10)				; oligos_6nt_mkv3_m5 versus MA0442.2 (SOX10); m=1/22; ncol2=11; w=11; offset=2; strand=D; shift=7; score=0.719035; -------rraACAAAGvm- ; cor=; Ncor= a 0 0 0 0 0 0 0 683.0 723.0 1118.0 2023.0 3.0 2029.0 1968.0 1959.0 10.0 666.0 638.0 0 c 0 0 0 0 0 0 0 397.0 283.0 372.0 4.0 1989.0 7.0 28.0 23.0 13.0 552.0 555.0 0 g 0 0 0 0 0 0 0 527.0 571.0 317.0 3.0 11.0 7.0 20.0 12.0 2012.0 619.0 505.0 0 t 0 0 0 0 0 0 0 448.0 478.0 248.0 25.0 52.0 12.0 39.0 61.0 20.0 218.0 357.0 0
MA0514.1_rc_shift7 (Sox3_rc)				; oligos_6nt_mkv3_m5 versus MA0514.1_rc (Sox3_rc); m=2/22; ncol2=10; w=10; offset=2; strand=R; shift=7; score=0.638326; -------rrrACAAAGG-- ; cor=; Ncor= a 0 0 0 0 0 0 0 989.0 1173.0 1115.0 2067.0 0.0 2067.0 2067.0 1805.0 515.0 250.0 0 0 c 0 0 0 0 0 0 0 382.0 22.0 254.0 0.0 1923.0 0.0 0.0 0.0 0.0 330.0 0 0 g 0 0 0 0 0 0 0 654.0 853.0 698.0 0.0 144.0 0.0 0.0 0.0 1552.0 1487.0 0 0 t 0 0 0 0 0 0 0 42.0 19.0 0.0 0.0 0.0 0.0 0.0 262.0 0.0 0.0 0 0
MA0867.2_shift8 (SOX4)				; oligos_6nt_mkv3_m5 versus MA0867.2 (SOX4); m=3/22; ncol2=10; w=10; offset=3; strand=D; shift=8; score=0.628273; --------gaACAAwGrv- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 3190.0 5582.0 5582.0 0.0 5582.0 5582.0 5582.0 1018.0 2093.0 1775.0 0 c 0 0 0 0 0 0 0 0 1771.0 951.0 0.0 5582.0 1.0 6.0 120.0 64.0 1422.0 1438.0 0 g 0 0 0 0 0 0 0 0 5582.0 2047.0 0.0 37.0 6.0 11.0 50.0 5582.0 3489.0 1889.0 0 t 0 0 0 0 0 0 0 0 2286.0 431.0 9.0 33.0 0.0 0.0 2719.0 83.0 174.0 480.0 0
MA0515.1_rc_shift7 (Sox6_rc)				; oligos_6nt_mkv3_m5 versus MA0515.1_rc (Sox6_rc); m=4/22; ncol2=10; w=10; offset=2; strand=R; shift=7; score=0.587115; -------rrrACAAwGg-- ; cor=; Ncor= a 0 0 0 0 0 0 0 128.0 133.0 129.0 249.0 0.0 249.0 249.0 88.0 28.0 56.0 0 0 c 0 0 0 0 0 0 0 31.0 0.0 5.0 0.0 249.0 0.0 0.0 0.0 0.0 50.0 0 0 g 0 0 0 0 0 0 0 76.0 112.0 115.0 0.0 0.0 0.0 0.0 0.0 221.0 139.0 0 0 t 0 0 0 0 0 0 0 14.0 4.0 0.0 0.0 0.0 0.0 0.0 161.0 0.0 4.0 0 0
MA1152.1_rc_shift7 (SOX15_rc)				; oligos_6nt_mkv3_m5 versus MA1152.1_rc (SOX15_rc); m=5/22; ncol2=10; w=10; offset=2; strand=R; shift=7; score=0.578007; -------araACAAwrr-- ; cor=; Ncor= a 0 0 0 0 0 0 0 407.0 418.0 506.0 971.0 5.0 994.0 988.0 362.0 501.0 267.0 0 0 c 0 0 0 0 0 0 0 165.0 114.0 125.0 3.0 890.0 2.0 6.0 5.0 26.0 147.0 0 0 g 0 0 0 0 0 0 0 188.0 253.0 188.0 2.0 21.0 2.0 3.0 3.0 412.0 554.0 0 0 t 0 0 0 0 0 0 0 241.0 215.0 180.0 24.0 83.0 3.0 3.0 631.0 62.0 32.0 0 0
MA0851.1_shift1 (Foxj3)				; oligos_6nt_mkv3_m5 versus MA0851.1 (Foxj3); m=6/22; ncol2=17; w=13; offset=-4; strand=D; shift=1; score=0.565815; -hraarRTAAACAAwsmc- ; cor=; Ncor= a 0 27.0 34.0 48.0 51.0 35.0 30.0 1.0 91.0 96.0 99.0 0.0 99.0 79.0 57.0 22.0 27.0 24.0 0 c 0 26.0 13.0 19.0 13.0 13.0 1.0 2.0 8.0 2.0 0.0 81.0 0.0 7.0 9.0 34.0 27.0 39.0 0 g 0 21.0 31.0 16.0 17.0 33.0 68.0 0.0 0.0 0.0 0.0 0.0 0.0 6.0 7.0 26.0 24.0 17.0 0 t 0 26.0 22.0 17.0 19.0 20.0 0.0 97.0 0.0 3.0 1.0 18.0 1.0 9.0 27.0 18.0 22.0 19.0 0
MA0084.1_shift6 (SRY)				; oligos_6nt_mkv3_m5 versus MA0084.1 (SRY); m=7/22; ncol2=9; w=9; offset=1; strand=D; shift=6; score=0.530049; ------kwwaACAAw---- ; cor=; Ncor= a 0 0 0 0 0 0 5.0 8.0 15.0 18.0 25.0 0.0 28.0 27.0 7.0 0 0 0 0 c 0 0 0 0 0 0 5.0 3.0 0.0 3.0 0.0 26.0 0.0 0.0 0.0 0 0 0 0 g 0 0 0 0 0 0 10.0 4.0 3.0 3.0 0.0 0.0 0.0 1.0 2.0 0 0 0 0 t 0 0 0 0 0 0 8.0 13.0 10.0 4.0 3.0 2.0 0.0 0.0 19.0 0 0 0 0
MA1125.1_shift4 (ZNF384)				; oligos_6nt_mkv3_m5 versus MA1125.1 (ZNF384); m=8/22; ncol2=12; w=11; offset=-1; strand=D; shift=4; score=0.527177; ----wwwmAAAAAAaa--- ; cor=; Ncor= a 0 0 0 0 9460.0 9116.0 9522.0 13125.0 30354.0 30191.0 30072.0 30252.0 30202.0 30406.0 20322.0 18916.0 0 0 0 c 0 0 0 0 4945.0 7025.0 3456.0 7691.0 7.0 35.0 21.0 13.0 26.0 6.0 2908.0 3963.0 0 0 0 g 0 0 0 0 5650.0 5133.0 4678.0 4721.0 13.0 19.0 26.0 15.0 14.0 0.0 2767.0 2898.0 0 0 0 t 0 0 0 0 10378.0 9159.0 12777.0 4896.0 59.0 188.0 314.0 153.0 191.0 21.0 4436.0 4656.0 0 0 0
MA0868.2_shift7 (SOX8)				; oligos_6nt_mkv3_m5 versus MA0868.2 (SOX8); m=9/22; ncol2=10; w=10; offset=2; strand=D; shift=7; score=0.527117; -------agAACAATrg-- ; cor=; Ncor= a 0 0 0 0 0 0 0 1827.0 740.0 1827.0 1827.0 3.0 1827.0 1827.0 273.0 1356.0 300.0 0 0 c 0 0 0 0 0 0 0 1124.0 414.0 151.0 0.0 1827.0 0.0 43.0 36.0 208.0 421.0 0 0 g 0 0 0 0 0 0 0 854.0 1827.0 263.0 0.0 35.0 0.0 0.0 20.0 1827.0 912.0 0 0 t 0 0 0 0 0 0 0 724.0 571.0 222.0 45.0 70.0 16.0 36.0 1827.0 287.0 193.0 0 0
MA0593.1_shift4 (FOXP2)				; oligos_6nt_mkv3_m5 versus MA0593.1 (FOXP2); m=10/22; ncol2=11; w=10; offset=-1; strand=D; shift=4; score=0.506249; ----awGTAAACAra---- ; cor=; Ncor= a 0 0 0 0 330.0 340.0 160.0 59.0 766.0 766.0 766.0 0.0 766.0 297.0 332.0 0 0 0 0 c 0 0 0 0 113.0 7.0 0.0 0.0 0.0 0.0 0.0 757.0 0.0 154.0 124.0 0 0 0 0 g 0 0 0 0 190.0 142.0 606.0 0.0 0.0 0.0 0.0 0.0 0.0 293.0 184.0 0 0 0 0 t 0 0 0 0 133.0 277.0 0.0 707.0 0.0 0.0 0.0 9.0 0.0 22.0 126.0 0 0 0 0
MA1606.1_shift4 (Foxf1)				; oligos_6nt_mkv3_m5 versus MA1606.1 (Foxf1); m=11/22; ncol2=11; w=10; offset=-1; strand=D; shift=4; score=0.486528; ----awrTAAACAaa---- ; cor=; Ncor= a 0 0 0 0 23159.0 17275.0 18534.0 568.0 57293.0 53942.0 57167.0 437.0 56436.0 18673.0 20323.0 0 0 0 0 c 0 0 0 0 10753.0 7560.0 3754.0 446.0 899.0 2249.0 475.0 54394.0 745.0 12643.0 11715.0 0 0 0 0 g 0 0 0 0 12462.0 8287.0 33599.0 1158.0 445.0 811.0 1067.0 522.0 443.0 14294.0 12844.0 0 0 0 0 t 0 0 0 0 13166.0 26418.0 3653.0 57368.0 903.0 2538.0 831.0 4187.0 1916.0 13930.0 14658.0 0 0 0 0
MA0846.1_shift3 (FOXC2)				; oligos_6nt_mkv3_m5 versus MA0846.1 (FOXC2); m=12/22; ncol2=12; w=10; offset=-2; strand=D; shift=3; score=0.485664; ---wAwrTAAAYAww---- ; cor=; Ncor= a 0 0 0 8939.0 20456.0 11301.0 6418.0 2005.0 20456.0 20456.0 20456.0 31.0 20456.0 13296.0 10995.0 0 0 0 0 c 0 0 0 1279.0 1652.0 3476.0 440.0 3773.0 6759.0 344.0 105.0 14435.0 101.0 2087.0 3080.0 0 0 0 0 g 0 0 0 454.0 5093.0 3129.0 14038.0 321.0 87.0 81.0 279.0 68.0 328.0 1710.0 2649.0 0 0 0 0 t 0 0 0 11517.0 2080.0 9155.0 136.0 20456.0 122.0 107.0 242.0 6021.0 215.0 7160.0 9461.0 0 0 0 0
MA0614.1_shift6 (Foxj2)				; oligos_6nt_mkv3_m5 versus MA0614.1 (Foxj2); m=13/22; ncol2=8; w=8; offset=1; strand=D; shift=6; score=0.472946; ------rTAAACAa----- ; cor=; Ncor= a 0 0 0 0 0 0 461.0 50.0 795.0 977.0 999.0 0.0 999.0 593.0 0 0 0 0 0 c 0 0 0 0 0 0 0.0 25.0 205.0 0.0 0.0 954.0 0.0 125.0 0 0 0 0 0 g 0 0 0 0 0 0 538.0 0.0 0.0 0.0 0.0 0.0 0.0 125.0 0 0 0 0 0 t 0 0 0 0 0 0 0.0 924.0 0.0 22.0 0.0 46.0 0.0 156.0 0 0 0 0 0
MA1489.1_shift6 (FOXN3)				; oligos_6nt_mkv3_m5 versus MA1489.1 (FOXN3); m=14/22; ncol2=8; w=8; offset=1; strand=D; shift=6; score=0.463516; ------GTAAACAA----- ; cor=; Ncor= a 0 0 0 0 0 0 9.0 9.0 971.0 971.0 971.0 9.0 971.0 971.0 0 0 0 0 0 c 0 0 0 0 0 0 9.0 9.0 9.0 9.0 9.0 971.0 9.0 9.0 0 0 0 0 0 g 0 0 0 0 0 0 971.0 9.0 9.0 9.0 9.0 9.0 9.0 9.0 0 0 0 0 0 t 0 0 0 0 0 0 9.0 971.0 9.0 9.0 9.0 9.0 9.0 9.0 0 0 0 0 0
MA0613.1_shift6 (FOXG1)				; oligos_6nt_mkv3_m5 versus MA0613.1 (FOXG1); m=15/22; ncol2=8; w=8; offset=1; strand=D; shift=6; score=0.457121; ------rTAAACAw----- ; cor=; Ncor= a 0 0 0 0 0 0 374.0 1.0 997.0 997.0 997.0 1.0 997.0 498.0 0 0 0 0 0 c 0 0 0 0 0 0 1.0 1.0 1.0 1.0 1.0 997.0 1.0 167.0 0 0 0 0 0 g 0 0 0 0 0 0 623.0 1.0 1.0 1.0 1.0 1.0 1.0 2.0 0 0 0 0 0 t 0 0 0 0 0 0 1.0 997.0 1.0 1.0 1.0 1.0 1.0 333.0 0 0 0 0 0
MA0157.2_shift6 (FOXO3)				; oligos_6nt_mkv3_m5 versus MA0157.2 (FOXO3); m=16/22; ncol2=8; w=8; offset=1; strand=D; shift=6; score=0.436706; ------GTAAACAw----- ; cor=; Ncor= a 0 0 0 0 0 0 21.0 0.0 532.0 532.0 532.0 15.0 532.0 317.0 0 0 0 0 0 c 0 0 0 0 0 0 0.0 0.0 16.0 1.0 10.0 532.0 11.0 12.0 0 0 0 0 0 g 0 0 0 0 0 0 532.0 13.0 5.0 0.0 0.0 0.0 0.0 36.0 0 0 0 0 0 t 0 0 0 0 0 0 0.0 532.0 1.0 0.0 0.0 3.0 0.0 215.0 0 0 0 0 0
MA0031.1_shift6 (FOXD1)				; oligos_6nt_mkv3_m5 versus MA0031.1 (FOXD1); m=17/22; ncol2=8; w=8; offset=1; strand=D; shift=6; score=0.420545; ------GTAAACAw----- ; cor=; Ncor= a 0 0 0 0 0 0 1.0 0.0 19.0 20.0 18.0 1.0 20.0 7.0 0 0 0 0 0 c 0 0 0 0 0 0 1.0 0.0 1.0 0.0 1.0 18.0 0.0 2.0 0 0 0 0 0 g 0 0 0 0 0 0 17.0 0.0 0.0 0.0 1.0 0.0 0.0 3.0 0 0 0 0 0 t 0 0 0 0 0 0 1.0 20.0 0.0 0.0 0.0 1.0 0.0 8.0 0 0 0 0 0
MA1487.1_shift0 (FOXE1)				; oligos_6nt_mkv3_m5 versus MA1487.1 (FOXE1); m=18/22; ncol2=15; w=10; offset=-5; strand=D; shift=0; score=0.412536; cvyTAARyAAACAay---- ; cor=; Ncor= a 54.0 288.0 37.0 191.0 664.0 664.0 664.0 0.0 664.0 664.0 664.0 0.0 664.0 521.0 148.0 0 0 0 0 c 289.0 381.0 298.0 0.0 15.0 57.0 0.0 324.0 10.0 8.0 0.0 664.0 0.0 84.0 180.0 0 0 0 0 g 165.0 283.0 38.0 0.0 30.0 58.0 228.0 0.0 0.0 0.0 0.0 0.0 3.0 123.0 100.0 0 0 0 0 t 155.0 0.0 366.0 664.0 0.0 194.0 0.0 340.0 0.0 0.0 0.0 0.0 0.0 142.0 235.0 0 0 0 0
MA0850.1_shift6 (FOXP3)				; oligos_6nt_mkv3_m5 versus MA0850.1 (FOXP3); m=19/22; ncol2=7; w=7; offset=1; strand=D; shift=6; score=0.411593; ------rTAAACA------ ; cor=; Ncor= a 0 0 0 0 0 0 74.0 20.0 211.0 211.0 211.0 0.0 211.0 0 0 0 0 0 0 c 0 0 0 0 0 0 0.0 52.0 0.0 0.0 15.0 211.0 0.0 0 0 0 0 0 0 g 0 0 0 0 0 0 137.0 0.0 0.0 9.0 49.0 32.0 18.0 0 0 0 0 0 0 t 0 0 0 0 0 0 0.0 211.0 31.0 8.0 0.0 39.0 0.0 0 0 0 0 0 0
MA0033.2_shift6 (FOXL1)				; oligos_6nt_mkv3_m5 versus MA0033.2 (FOXL1); m=20/22; ncol2=7; w=7; offset=1; strand=D; shift=6; score=0.40967; ------rTAAACA------ ; cor=; Ncor= a 0 0 0 0 0 0 2102.0 10.0 4780.0 4780.0 4780.0 0.0 4780.0 0 0 0 0 0 0 c 0 0 0 0 0 0 13.0 416.0 628.0 38.0 82.0 3723.0 54.0 0 0 0 0 0 0 g 0 0 0 0 0 0 2678.0 0.0 57.0 0.0 50.0 0.0 0.0 0 0 0 0 0 0 t 0 0 0 0 0 0 140.0 4780.0 0.0 15.0 0.0 1057.0 17.0 0 0 0 0 0 0
MA0848.1_shift6 (FOXO4)				; oligos_6nt_mkv3_m5 versus MA0848.1 (FOXO4); m=21/22; ncol2=7; w=7; offset=1; strand=D; shift=6; score=0.404251; ------GTAAACA------ ; cor=; Ncor= a 0 0 0 0 0 0 1669.0 345.0 5378.0 5378.0 5378.0 58.0 5378.0 0 0 0 0 0 0 c 0 0 0 0 0 0 13.0 69.0 1259.0 146.0 0.0 5378.0 10.0 0 0 0 0 0 0 g 0 0 0 0 0 0 5378.0 123.0 32.0 19.0 90.0 33.0 10.0 0 0 0 0 0 0 t 0 0 0 0 0 0 0.0 5378.0 20.0 20.0 10.0 958.0 40.0 0 0 0 0 0 0
MA0030.1_shift1 (FOXF2)				; oligos_6nt_mkv3_m5 versus MA0030.1 (FOXF2); m=22/22; ncol2=14; w=10; offset=-4; strand=D; shift=1; score=0.404137; -bmaasRTAAACAaw---- ; cor=; Ncor= a 0 1.0 10.0 17.0 13.0 3.0 7.0 0.0 27.0 27.0 27.0 0.0 27.0 16.0 7.0 0 0 0 0 c 0 10.0 7.0 4.0 5.0 11.0 0.0 0.0 0.0 0.0 0.0 25.0 0.0 4.0 4.0 0 0 0 0 g 0 7.0 5.0 2.0 5.0 8.0 20.0 0.0 0.0 0.0 0.0 0.0 0.0 2.0 6.0 0 0 0 0 t 0 9.0 5.0 4.0 5.0 0.0 0.0 27.0 0.0 0.0 0.0 2.0 0.0 5.0 10.0 0 0 0 0