<blockquote class='timewarn'>
<font color='#00BB00'><b>TimeWarn: </b>2012_03_11.083407	Reading sequences	/home/rsat/rsa-tools/public_html/tmp/peak-motifs.2012_03_11.082424/data/sequences/peak-motifs_test_maxlen2000_purged_ml30_mis0.fasta</font>
</blockquote><br><hr size=3>
<blockquote class='timewarn'>
<font color='#00BB00'><b>TimeWarn: </b>2012_03_11.083423		Reading sequence	500	id=dm3_chr2L_8587654_8588750_+	length_sum=705637	last_pos=1090	ref_pos=548</font>
</blockquote><br><hr size=3>
<blockquote class='timewarn'>
<font color='#00BB00'><b>TimeWarn: </b>2012_03_11.083438		Reading sequence	1000	id=dm3_chr2L_18838483_18839915_+	length_sum=1371582	last_pos=1426	ref_pos=716</font>
</blockquote><br><hr size=3>
<blockquote class='timewarn'>
<font color='#00BB00'><b>TimeWarn: </b>2012_03_11.083452		Reading sequence	1500	id=dm3_chr2R_6693670_6694659_+	length_sum=2031842	last_pos=983	ref_pos=495</font>
</blockquote><br><hr size=3>
<blockquote class='timewarn'>
<font color='#00BB00'><b>TimeWarn: </b>2012_03_11.083508		Reading sequence	2000	id=dm3_chr2R_15298201_15299319_+	length_sum=2712500	last_pos=1112	ref_pos=560</font>
</blockquote><br><hr size=3>
<blockquote class='timewarn'>
<font color='#00BB00'><b>TimeWarn: </b>2012_03_11.083524		Reading sequence	2500	id=dm3_chr3L_2774162_2775275_+	length_sum=3433211	last_pos=1107	ref_pos=557</font>
</blockquote><br><hr size=3>
<blockquote class='timewarn'>
<font color='#00BB00'><b>TimeWarn: </b>2012_03_11.083538		Reading sequence	3000	id=dm3_chr3L_12580405_12581165_+	length_sum=4092659	last_pos=754	ref_pos=380</font>
</blockquote><br><hr size=3>
<blockquote class='timewarn'>
<font color='#00BB00'><b>TimeWarn: </b>2012_03_11.083553		Reading sequence	3500	id=dm3_chr3L_22844133_22845411_+	length_sum=4755948	last_pos=1272	ref_pos=640</font>
</blockquote><br><hr size=3>
<blockquote class='timewarn'>
<font color='#00BB00'><b>TimeWarn: </b>2012_03_11.083609		Reading sequence	4000	id=dm3_chr3R_8894613_8898969_+	length_sum=5462437	last_pos=1994	ref_pos=1000</font>
</blockquote><br><hr size=3>
<blockquote class='timewarn'>
<font color='#00BB00'><b>TimeWarn: </b>2012_03_11.083624		Reading sequence	4500	id=dm3_chr3R_17967296_17969597_+	length_sum=6158626	last_pos=1994	ref_pos=1000</font>
</blockquote><br><hr size=3>
<blockquote class='timewarn'>
<font color='#00BB00'><b>TimeWarn: </b>2012_03_11.083640		Reading sequence	5000	id=dm3_chr4_1202358_1203074_+	length_sum=6853194	last_pos=710	ref_pos=358</font>
</blockquote><br><hr size=3>
<blockquote class='timewarn'>
<font color='#00BB00'><b>TimeWarn: </b>2012_03_11.083654		Reading sequence	5500	id=dm3_chrX_9049297_9050256_+	length_sum=7486953	last_pos=953	ref_pos=480</font>
</blockquote><br><hr size=3>
<blockquote class='timewarn'>
<font color='#00BB00'><b>TimeWarn: </b>2012_03_11.083707		Reading sequence	6000	id=dm3_chrX_22386213_22387188_+	length_sum=8083646	last_pos=969	ref_pos=488</font>
</blockquote><br><hr size=3>
<blockquote class='timewarn'>
<font color='#00BB00'><b>TimeWarn: </b>2012_03_11.083707	Calculating stats on sequence lengths</font>
</blockquote><br><hr size=3>
<blockquote class='timewarn'>
<font color='#00BB00'><b>TimeWarn: </b>2012_03_11.083707	Finished reading sequences. Number of patterns	24290</font>
</blockquote><br><hr size=3>
<blockquote class='timewarn'>
<font color='#00BB00'><b>TimeWarn: </b>2012_03_11.083707	Checking DNA</font>
</blockquote><br><hr size=3>
<blockquote class='timewarn'>
<font color='#00BB00'><b>TimeWarn: </b>2012_03_11.083707	Calculating classes</font>
</blockquote><br><hr size=3>
<blockquote class='timewarn'>
<font color='#00BB00'><b>TimeWarn: </b>2012_03_11.083707	Calculating sums of occurrences</font>
</blockquote><br><hr size=3>
<blockquote class='timewarn'>
<font color='#00BB00'><b>TimeWarn: </b>2012_03_11.083707	Summing occurrences of reverse complementary patterns</font>
</blockquote><br><hr size=3>
<blockquote class='timewarn'>
<font color='#00BB00'><b>TimeWarn: </b>2012_03_11.083723	Grouping patterns by pairs of reverse complements</font>
</blockquote><br><hr size=3>
<blockquote class='information'>
<font color='#00BB00'><b>Information: </b>Number of patterns before filtering	8192</font>
</blockquote><br><hr size=3>
<blockquote class='information'>
<font color='#00BB00'><b>Information: </b>Filtered by occurrences	8192	remaining patterns</font>
</blockquote><br><hr size=3>
<blockquote class='timewarn'>
<font color='#00BB00'><b>TimeWarn: </b>2012_03_11.083723	Calculating expected occurrences</font>
</blockquote><br><hr size=3>
<blockquote class='timewarn'>
<font color='#00BB00'><b>TimeWarn: </b>2012_03_11.083726	Calculating chi values</font>
</blockquote><br><hr size=3>
<blockquote class='information'>
<font color='#00BB00'><b>Information: </b>Chi and sig computed	198	remaining patterns</font>
</blockquote><br><hr size=3>
<blockquote class='timewarn'>
<font color='#00BB00'><b>TimeWarn: </b>2012_03_11.083729	Printing results	198	patterns</font>
</blockquote><br><hr size=3>
<blockquote class='timewarn'>
<font color='#00BB00'><b>TimeWarn: </b>2012_03_11.083729	Sorting results</font>
</blockquote><br><hr size=3>
<blockquote class='timewarn'>
<font color='#00BB00'><b>TimeWarn: </b>2012_03_11.083729	Sorted	198	patterns</font>
</blockquote><br><hr size=3>
<blockquote class='timewarn'>
<font color='#00BB00'><b>TimeWarn: </b>2012_03_11.083729	Retained	50	top-raking patterns</font>
</blockquote><br><hr size=3>
<blockquote class='timewarn'>
<font color='#00BB00'><b>TimeWarn: </b>2012_03_11.083729	Printing results</font>
</blockquote><br><hr size=3>
;2012_03_11.083729	generating the graphs ... 
<blockquote class='information'>
<font color='#00BB00'><b>Information: </b>Index file	/home/rsat/rsa-tools/public_html/tmp/peak-motifs.2012_03_11.082424/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50_graph_index.html</font>
</blockquote><br><hr size=3>
<blockquote class='warning'>
<font color='#FFAA00'><b>Warning: </b>Exported 21 graphs</font>
</blockquote><br><hr size=3>

real	3m25.318s
user	3m24.516s
sys	0m0.548s
