; convert-matrix  -v 1 -i /home/rsat/rsa-tools/public_html/tmp/peak-motifs.2012_03_11.082424/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50_pssm_count_matrices.txt -from tab -to tab -return counts -return logo -logo_format png,pdf -logo_file /home/rsat/rsa-tools/public_html/tmp/peak-motifs.2012_03_11.082424/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50_pssm_count_matrices_logo -o /home/rsat/rsa-tools/public_html/tmp/peak-motifs.2012_03_11.082424/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50_pssm_count_matrices_links.txt
; Input files
;	input	/home/rsat/rsa-tools/public_html/tmp/peak-motifs.2012_03_11.082424/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50_pssm_count_matrices.txt
; Input format        	tab
; Output files
;	output	/home/rsat/rsa-tools/public_html/tmp/peak-motifs.2012_03_11.082424/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50_pssm_count_matrices_links.txt
; Output format       	tab
; pseudo-weight       	1
a	|	338	299	421	1039	1054	828	0	0	0	3	8	840	779	305	274
c	|	216	265	122	1	2	15	1	0	0	0	4	1	89	195	240
g	|	316	275	453	11	13	223	1073	1071	1074	27	1	232	103	393	287
t	|	204	235	78	23	5	8	0	3	0	1044	1061	1	103	181	273
//
; logo file:/home/rsat/rsa-tools/public_html/tmp/peak-motifs.2012_03_11.082424/results/positions_6nt//peak-motifs_positions-2str-noov_6nt_ci50_pssm_count_matrices_logo_m1.png
; logo file:/home/rsat/rsa-tools/public_html/tmp/peak-motifs.2012_03_11.082424/results/positions_6nt//peak-motifs_positions-2str-noov_6nt_ci50_pssm_count_matrices_logo_m1.pdf
; logo file:/home/rsat/rsa-tools/public_html/tmp/peak-motifs.2012_03_11.082424/results/positions_6nt//peak-motifs_positions-2str-noov_6nt_ci50_pssm_count_matrices_logo_m1_rc.png
; logo file:/home/rsat/rsa-tools/public_html/tmp/peak-motifs.2012_03_11.082424/results/positions_6nt//peak-motifs_positions-2str-noov_6nt_ci50_pssm_count_matrices_logo_m1_rc.pdf
a	|	555	493	1330	783	752	758	860	683	194	82	994	548	955	484	858	663	1038	718	981	20	1546	473	558	469
c	|	291	340	111	53	54	47	59	41	73	81	35	40	29	41	28	44	41	31	27	43	50	36	269	321
g	|	321	330	74	47	58	46	65	49	122	78	50	33	25	36	55	34	44	41	34	42	48	27	354	275
t	|	501	505	153	785	804	817	684	895	1279	1427	589	1047	659	1107	727	927	545	878	626	1563	24	1132	487	603
//
; logo file:/home/rsat/rsa-tools/public_html/tmp/peak-motifs.2012_03_11.082424/results/positions_6nt//peak-motifs_positions-2str-noov_6nt_ci50_pssm_count_matrices_logo_m2.png
; logo file:/home/rsat/rsa-tools/public_html/tmp/peak-motifs.2012_03_11.082424/results/positions_6nt//peak-motifs_positions-2str-noov_6nt_ci50_pssm_count_matrices_logo_m2.pdf
; logo file:/home/rsat/rsa-tools/public_html/tmp/peak-motifs.2012_03_11.082424/results/positions_6nt//peak-motifs_positions-2str-noov_6nt_ci50_pssm_count_matrices_logo_m2_rc.png
; logo file:/home/rsat/rsa-tools/public_html/tmp/peak-motifs.2012_03_11.082424/results/positions_6nt//peak-motifs_positions-2str-noov_6nt_ci50_pssm_count_matrices_logo_m2_rc.pdf
a	|	1036	986	0	3557	0	0	0	3557	1228	1214
c	|	764	745	3557	0	0	0	0	0	538	770
g	|	860	1059	0	0	3557	3557	0	0	1249	762
t	|	897	767	0	0	0	0	3557	0	542	811
//
; logo file:/home/rsat/rsa-tools/public_html/tmp/peak-motifs.2012_03_11.082424/results/positions_6nt//peak-motifs_positions-2str-noov_6nt_ci50_pssm_count_matrices_logo_m3.png
; logo file:/home/rsat/rsa-tools/public_html/tmp/peak-motifs.2012_03_11.082424/results/positions_6nt//peak-motifs_positions-2str-noov_6nt_ci50_pssm_count_matrices_logo_m3.pdf
; logo file:/home/rsat/rsa-tools/public_html/tmp/peak-motifs.2012_03_11.082424/results/positions_6nt//peak-motifs_positions-2str-noov_6nt_ci50_pssm_count_matrices_logo_m3_rc.png
; logo file:/home/rsat/rsa-tools/public_html/tmp/peak-motifs.2012_03_11.082424/results/positions_6nt//peak-motifs_positions-2str-noov_6nt_ci50_pssm_count_matrices_logo_m3_rc.pdf
; Host name	rsat
; Job started	2012_03_11.083404
; Job done	2012_03_11.083407
; Seconds	0.3
;	user	0.3
;	system	0.03
;	cuser	2.4
;	csystem	0.18
