; convert-matrix  -v 1 -i /home/rsat/rsa-tools/public_html/tmp/peak-motifs.2012_03_11.082424/results/oligos_7nt_mkv5/peak-motifs_oligos-2str-noov_7nt_mkv5_pssm_count_matrices.txt -from tab -to tab -return counts -return logo -logo_format png,pdf -logo_file /home/rsat/rsa-tools/public_html/tmp/peak-motifs.2012_03_11.082424/results/oligos_7nt_mkv5/peak-motifs_oligos-2str-noov_7nt_mkv5_pssm_count_matrices_logo -o /home/rsat/rsa-tools/public_html/tmp/peak-motifs.2012_03_11.082424/results/oligos_7nt_mkv5/peak-motifs_oligos-2str-noov_7nt_mkv5_pssm_count_matrices_links.txt
; Input files
;	input	/home/rsat/rsa-tools/public_html/tmp/peak-motifs.2012_03_11.082424/results/oligos_7nt_mkv5/peak-motifs_oligos-2str-noov_7nt_mkv5_pssm_count_matrices.txt
; Input format        	tab
; Output files
;	output	/home/rsat/rsa-tools/public_html/tmp/peak-motifs.2012_03_11.082424/results/oligos_7nt_mkv5/peak-motifs_oligos-2str-noov_7nt_mkv5_pssm_count_matrices_links.txt
; Output format       	tab
; pseudo-weight       	1
a	|	1274	1387	0	4484	0	0	0	0	0	4484	1227	1330
c	|	685	584	0	0	0	1204	0	0	0	0	707	1019
g	|	685	1071	0	0	0	0	0	1682	1241	0	715	758
t	|	1840	1442	4484	0	4484	3280	4484	2802	3243	0	1835	1377
//
; logo file:/home/rsat/rsa-tools/public_html/tmp/peak-motifs.2012_03_11.082424/results/oligos_7nt_mkv5//peak-motifs_oligos-2str-noov_7nt_mkv5_pssm_count_matrices_logo_m1.png
; logo file:/home/rsat/rsa-tools/public_html/tmp/peak-motifs.2012_03_11.082424/results/oligos_7nt_mkv5//peak-motifs_oligos-2str-noov_7nt_mkv5_pssm_count_matrices_logo_m1.pdf
; logo file:/home/rsat/rsa-tools/public_html/tmp/peak-motifs.2012_03_11.082424/results/oligos_7nt_mkv5//peak-motifs_oligos-2str-noov_7nt_mkv5_pssm_count_matrices_logo_m1_rc.png
; logo file:/home/rsat/rsa-tools/public_html/tmp/peak-motifs.2012_03_11.082424/results/oligos_7nt_mkv5//peak-motifs_oligos-2str-noov_7nt_mkv5_pssm_count_matrices_logo_m1_rc.pdf
a	|	2194	2297	6636	6636	0	6636	0	6636	6636	2283	2203
c	|	1355	1342	0	0	5129	0	3468	0	0	1367	1387
g	|	1234	1358	0	0	0	0	1211	0	0	1096	1135
t	|	1853	1639	0	0	1507	0	1957	0	0	1890	1911
//
; logo file:/home/rsat/rsa-tools/public_html/tmp/peak-motifs.2012_03_11.082424/results/oligos_7nt_mkv5//peak-motifs_oligos-2str-noov_7nt_mkv5_pssm_count_matrices_logo_m2.png
; logo file:/home/rsat/rsa-tools/public_html/tmp/peak-motifs.2012_03_11.082424/results/oligos_7nt_mkv5//peak-motifs_oligos-2str-noov_7nt_mkv5_pssm_count_matrices_logo_m2.pdf
; logo file:/home/rsat/rsa-tools/public_html/tmp/peak-motifs.2012_03_11.082424/results/oligos_7nt_mkv5//peak-motifs_oligos-2str-noov_7nt_mkv5_pssm_count_matrices_logo_m2_rc.png
; logo file:/home/rsat/rsa-tools/public_html/tmp/peak-motifs.2012_03_11.082424/results/oligos_7nt_mkv5//peak-motifs_oligos-2str-noov_7nt_mkv5_pssm_count_matrices_logo_m2_rc.pdf
a	|	700	493	0	0	2679	0	1110	0	1408	0	1227	463
c	|	641	905	2679	2679	0	2679	0	2679	1271	2679	662	1262
g	|	571	804	0	0	0	0	862	0	0	0	311	365
t	|	767	477	0	0	0	0	707	0	0	0	479	589
//
; logo file:/home/rsat/rsa-tools/public_html/tmp/peak-motifs.2012_03_11.082424/results/oligos_7nt_mkv5//peak-motifs_oligos-2str-noov_7nt_mkv5_pssm_count_matrices_logo_m3.png
; logo file:/home/rsat/rsa-tools/public_html/tmp/peak-motifs.2012_03_11.082424/results/oligos_7nt_mkv5//peak-motifs_oligos-2str-noov_7nt_mkv5_pssm_count_matrices_logo_m3.pdf
; logo file:/home/rsat/rsa-tools/public_html/tmp/peak-motifs.2012_03_11.082424/results/oligos_7nt_mkv5//peak-motifs_oligos-2str-noov_7nt_mkv5_pssm_count_matrices_logo_m3_rc.png
; logo file:/home/rsat/rsa-tools/public_html/tmp/peak-motifs.2012_03_11.082424/results/oligos_7nt_mkv5//peak-motifs_oligos-2str-noov_7nt_mkv5_pssm_count_matrices_logo_m3_rc.pdf
; Host name	rsat
; Job started	2012_03_11.083035
; Job done	2012_03_11.083039
; Seconds	0.43
;	user	0.43
;	system	0.04
;	cuser	3.2
;	csystem	0.22
