; convert-matrix  -v 1 -i /home/rsat/rsa-tools/public_html/tmp/peak-motifs.2012_03_11.082424/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50_pssm_count_matrices.txt -from tab -to tab -return counts -return logo -logo_format png,pdf -logo_file /home/rsat/rsa-tools/public_html/tmp/peak-motifs.2012_03_11.082424/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50_pssm_count_matrices_logo -o /home/rsat/rsa-tools/public_html/tmp/peak-motifs.2012_03_11.082424/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50_pssm_count_matrices_links.txt
; Input files
;	input	/home/rsat/rsa-tools/public_html/tmp/peak-motifs.2012_03_11.082424/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50_pssm_count_matrices.txt
; Input format        	tab
; Output files
;	output	/home/rsat/rsa-tools/public_html/tmp/peak-motifs.2012_03_11.082424/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50_pssm_count_matrices_links.txt
; Output format       	tab
; pseudo-weight       	1
a	|	325	287	388	918	991	801	0	0	0	1	1	821	814	317	252
c	|	201	244	235	0	1	5	0	0	0	0	0	0	49	162	228
g	|	288	256	319	72	12	200	1008	1008	1008	10	0	187	73	370	271
t	|	194	221	66	18	4	2	0	0	0	997	1007	0	72	159	257
//
; logo file:/home/rsat/rsa-tools/public_html/tmp/peak-motifs.2012_03_11.082424/results/positions_7nt//peak-motifs_positions-2str-noov_7nt_ci50_pssm_count_matrices_logo_m1.png
; logo file:/home/rsat/rsa-tools/public_html/tmp/peak-motifs.2012_03_11.082424/results/positions_7nt//peak-motifs_positions-2str-noov_7nt_ci50_pssm_count_matrices_logo_m1.pdf
; logo file:/home/rsat/rsa-tools/public_html/tmp/peak-motifs.2012_03_11.082424/results/positions_7nt//peak-motifs_positions-2str-noov_7nt_ci50_pssm_count_matrices_logo_m1_rc.png
; logo file:/home/rsat/rsa-tools/public_html/tmp/peak-motifs.2012_03_11.082424/results/positions_7nt//peak-motifs_positions-2str-noov_7nt_ci50_pssm_count_matrices_logo_m1_rc.pdf
a	|	1198	1305	2806	3297	188	1654	1534	1888	2133	1805	2054	1138	2494	149	1670	193	1340	2771	1162	1178
c	|	661	685	268	118	85	58	57	49	77	64	46	89	59	109	39	140	77	282	659	648
g	|	708	645	154	125	98	62	50	47	69	51	73	79	75	114	59	130	74	234	685	665
t	|	1192	1124	531	219	3388	1985	2118	1775	1480	1839	1586	2453	1131	3387	1991	3296	2268	472	1253	1268
//
; logo file:/home/rsat/rsa-tools/public_html/tmp/peak-motifs.2012_03_11.082424/results/positions_7nt//peak-motifs_positions-2str-noov_7nt_ci50_pssm_count_matrices_logo_m2.png
; logo file:/home/rsat/rsa-tools/public_html/tmp/peak-motifs.2012_03_11.082424/results/positions_7nt//peak-motifs_positions-2str-noov_7nt_ci50_pssm_count_matrices_logo_m2.pdf
; logo file:/home/rsat/rsa-tools/public_html/tmp/peak-motifs.2012_03_11.082424/results/positions_7nt//peak-motifs_positions-2str-noov_7nt_ci50_pssm_count_matrices_logo_m2_rc.png
; logo file:/home/rsat/rsa-tools/public_html/tmp/peak-motifs.2012_03_11.082424/results/positions_7nt//peak-motifs_positions-2str-noov_7nt_ci50_pssm_count_matrices_logo_m2_rc.pdf
a	|	576	599	23	0	0	0	0	0	0	0	798	520
c	|	1281	2822	4	5043	0	5043	0	5043	0	5043	816	2766
g	|	950	581	1788	0	0	0	1653	0	1290	0	972	752
t	|	2236	1041	3228	0	5043	0	3390	0	3753	0	2457	1005
//
; logo file:/home/rsat/rsa-tools/public_html/tmp/peak-motifs.2012_03_11.082424/results/positions_7nt//peak-motifs_positions-2str-noov_7nt_ci50_pssm_count_matrices_logo_m3.png
; logo file:/home/rsat/rsa-tools/public_html/tmp/peak-motifs.2012_03_11.082424/results/positions_7nt//peak-motifs_positions-2str-noov_7nt_ci50_pssm_count_matrices_logo_m3.pdf
; logo file:/home/rsat/rsa-tools/public_html/tmp/peak-motifs.2012_03_11.082424/results/positions_7nt//peak-motifs_positions-2str-noov_7nt_ci50_pssm_count_matrices_logo_m3_rc.png
; logo file:/home/rsat/rsa-tools/public_html/tmp/peak-motifs.2012_03_11.082424/results/positions_7nt//peak-motifs_positions-2str-noov_7nt_ci50_pssm_count_matrices_logo_m3_rc.pdf
; Host name	rsat
; Job started	2012_03_11.083804
; Job done	2012_03_11.083808
; Seconds	0.41
;	user	0.41
;	system	0.03
;	cuser	3.18
;	csystem	0.21
