; convert-matrix  -v 1 -i /home/rsat/rsa-tools/public_html/tmp/peak-motifs.2012_03_11.082424/results/oligos_6nt_mkv4/peak-motifs_oligos-2str-noov_6nt_mkv4_pssm_count_matrices.txt -from tab -to tab -return counts -return logo -logo_format png,pdf -logo_file /home/rsat/rsa-tools/public_html/tmp/peak-motifs.2012_03_11.082424/results/oligos_6nt_mkv4/peak-motifs_oligos-2str-noov_6nt_mkv4_pssm_count_matrices_logo -o /home/rsat/rsa-tools/public_html/tmp/peak-motifs.2012_03_11.082424/results/oligos_6nt_mkv4/peak-motifs_oligos-2str-noov_6nt_mkv4_pssm_count_matrices_links.txt
; Input files
;	input	/home/rsat/rsa-tools/public_html/tmp/peak-motifs.2012_03_11.082424/results/oligos_6nt_mkv4/peak-motifs_oligos-2str-noov_6nt_mkv4_pssm_count_matrices.txt
; Input format        	tab
; Output files
;	output	/home/rsat/rsa-tools/public_html/tmp/peak-motifs.2012_03_11.082424/results/oligos_6nt_mkv4/peak-motifs_oligos-2str-noov_6nt_mkv4_pssm_count_matrices_links.txt
; Output format       	tab
; pseudo-weight       	1
a	|	474	394	0	0	0	1796	0	0	1796	611	473
c	|	435	355	1796	0	0	0	0	1203	0	347	443
g	|	342	496	0	0	0	0	0	593	0	458	295
t	|	545	551	0	1796	1796	0	1796	0	0	380	585
//
; logo file:/home/rsat/rsa-tools/public_html/tmp/peak-motifs.2012_03_11.082424/results/oligos_6nt_mkv4//peak-motifs_oligos-2str-noov_6nt_mkv4_pssm_count_matrices_logo_m1.png
; logo file:/home/rsat/rsa-tools/public_html/tmp/peak-motifs.2012_03_11.082424/results/oligos_6nt_mkv4//peak-motifs_oligos-2str-noov_6nt_mkv4_pssm_count_matrices_logo_m1.pdf
; logo file:/home/rsat/rsa-tools/public_html/tmp/peak-motifs.2012_03_11.082424/results/oligos_6nt_mkv4//peak-motifs_oligos-2str-noov_6nt_mkv4_pssm_count_matrices_logo_m1_rc.png
; logo file:/home/rsat/rsa-tools/public_html/tmp/peak-motifs.2012_03_11.082424/results/oligos_6nt_mkv4//peak-motifs_oligos-2str-noov_6nt_mkv4_pssm_count_matrices_logo_m1_rc.pdf
a	|	1904	1156	4754	0	4754	0	4754	0	2319	1234
c	|	841	1841	0	0	0	0	0	4754	563	1169
g	|	931	929	0	4754	0	0	0	0	724	1054
t	|	1078	828	0	0	0	4754	0	0	1148	1297
//
; logo file:/home/rsat/rsa-tools/public_html/tmp/peak-motifs.2012_03_11.082424/results/oligos_6nt_mkv4//peak-motifs_oligos-2str-noov_6nt_mkv4_pssm_count_matrices_logo_m2.png
; logo file:/home/rsat/rsa-tools/public_html/tmp/peak-motifs.2012_03_11.082424/results/oligos_6nt_mkv4//peak-motifs_oligos-2str-noov_6nt_mkv4_pssm_count_matrices_logo_m2.pdf
; logo file:/home/rsat/rsa-tools/public_html/tmp/peak-motifs.2012_03_11.082424/results/oligos_6nt_mkv4//peak-motifs_oligos-2str-noov_6nt_mkv4_pssm_count_matrices_logo_m2_rc.png
; logo file:/home/rsat/rsa-tools/public_html/tmp/peak-motifs.2012_03_11.082424/results/oligos_6nt_mkv4//peak-motifs_oligos-2str-noov_6nt_mkv4_pssm_count_matrices_logo_m2_rc.pdf
a	|	1566	3368	0	7443	0	7443	0	7443	1588	3283
c	|	1981	835	0	0	7443	0	0	0	1762	858
g	|	900	1799	0	0	0	0	0	0	757	1698
t	|	2996	1441	7443	0	0	0	7443	0	3336	1604
//
; logo file:/home/rsat/rsa-tools/public_html/tmp/peak-motifs.2012_03_11.082424/results/oligos_6nt_mkv4//peak-motifs_oligos-2str-noov_6nt_mkv4_pssm_count_matrices_logo_m3.png
; logo file:/home/rsat/rsa-tools/public_html/tmp/peak-motifs.2012_03_11.082424/results/oligos_6nt_mkv4//peak-motifs_oligos-2str-noov_6nt_mkv4_pssm_count_matrices_logo_m3.pdf
; logo file:/home/rsat/rsa-tools/public_html/tmp/peak-motifs.2012_03_11.082424/results/oligos_6nt_mkv4//peak-motifs_oligos-2str-noov_6nt_mkv4_pssm_count_matrices_logo_m3_rc.png
; logo file:/home/rsat/rsa-tools/public_html/tmp/peak-motifs.2012_03_11.082424/results/oligos_6nt_mkv4//peak-motifs_oligos-2str-noov_6nt_mkv4_pssm_count_matrices_logo_m3_rc.pdf
; Host name	rsat
; Job started	2012_03_11.082958
; Job done	2012_03_11.083002
; Seconds	0.42
;	user	0.42
;	system	0.03
;	cuser	2.99
;	csystem	0.2
