# RSA-tools - peak-motifs result

### Analysis: _Kr_D.mel_1-3h_Markov_m=k-2_ (11/03/2012 08:46)

    Command:  peak-motifs  -v 1 -title _Kr_D.mel_1-3h_Markov_m=k-2_ -i $RSAT/public_html/tmp/peak-motifs.2012_03_11.082424/peak-motifspeak_seq.masked -max_seq_len 2000 -min_markov -2 -max_markov -2 -disco oligos,positions -nmotifs 3 -minol 6 -maxol 7 -2str -motif_db jaspar_core_insects tf $RSAT/public_html/data/motif_databases/JASPAR/jaspar_core_insects_2009_10.tf -motif_db FlyFactorSurvey tf $RSAT/public_html/data/motif_databases/FlyFactorSurvey/PWM_FlyFactorSurvey.tf -motif_db DMMPMM_drosophila tf $RSAT/public_html/data/motif_databases/DMMPMM_drosophila/dmmpmm_PCM.tf -motif_db IDMMPMM_drosophila tf $RSAT/public_html/data/motif_databases/DMMPMM_drosophila/idmmpmm_PCM.tf -ref_motifs $RSAT/public_html/tmp/peak-motifs.2012_03_11.082424/peak-motifs_ref_motifs.tf -source galaxy -task purge,seqlen,composition,disco,merge_words,collect_motifs,motifs_vs_motifs,timelog,archive,synthesis,motifs_vs_db,ref_motifs,motifs_vs_ref,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/peak-motifs.2012_03_11.082424