<blockquote class='timewarn'>
<font color='#00BB00'><b>TimeWarn: </b>2012_03_11.083039	Reading sequences	/home/rsat/rsa-tools/public_html/tmp/peak-motifs.2012_03_11.082424/data/sequences/peak-motifs_test_maxlen2000_purged_ml30_mis0.fasta</font>
</blockquote><br><hr size=3>
<blockquote class='timewarn'>
<font color='#00BB00'><b>TimeWarn: </b>2012_03_11.083054		Reading sequence	500	id=dm3_chr2L_8587654_8588750_+	length_sum=705637	last_pos=1091	ref_pos=548</font>
</blockquote><br><hr size=3>
<blockquote class='timewarn'>
<font color='#00BB00'><b>TimeWarn: </b>2012_03_11.083108		Reading sequence	1000	id=dm3_chr2L_18838483_18839915_+	length_sum=1371582	last_pos=1427	ref_pos=716</font>
</blockquote><br><hr size=3>
<blockquote class='timewarn'>
<font color='#00BB00'><b>TimeWarn: </b>2012_03_11.083122		Reading sequence	1500	id=dm3_chr2R_6693670_6694659_+	length_sum=2031842	last_pos=984	ref_pos=495</font>
</blockquote><br><hr size=3>
<blockquote class='timewarn'>
<font color='#00BB00'><b>TimeWarn: </b>2012_03_11.083136		Reading sequence	2000	id=dm3_chr2R_15298201_15299319_+	length_sum=2712500	last_pos=1113	ref_pos=560</font>
</blockquote><br><hr size=3>
<blockquote class='timewarn'>
<font color='#00BB00'><b>TimeWarn: </b>2012_03_11.083151		Reading sequence	2500	id=dm3_chr3L_2774162_2775275_+	length_sum=3433211	last_pos=1108	ref_pos=557</font>
</blockquote><br><hr size=3>
<blockquote class='timewarn'>
<font color='#00BB00'><b>TimeWarn: </b>2012_03_11.083204		Reading sequence	3000	id=dm3_chr3L_12580405_12581165_+	length_sum=4092659	last_pos=755	ref_pos=380</font>
</blockquote><br><hr size=3>
<blockquote class='timewarn'>
<font color='#00BB00'><b>TimeWarn: </b>2012_03_11.083218		Reading sequence	3500	id=dm3_chr3L_22844133_22845411_+	length_sum=4755948	last_pos=1273	ref_pos=640</font>
</blockquote><br><hr size=3>
<blockquote class='timewarn'>
<font color='#00BB00'><b>TimeWarn: </b>2012_03_11.083233		Reading sequence	4000	id=dm3_chr3R_8894613_8898969_+	length_sum=5462437	last_pos=1995	ref_pos=1000</font>
</blockquote><br><hr size=3>
<blockquote class='timewarn'>
<font color='#00BB00'><b>TimeWarn: </b>2012_03_11.083247		Reading sequence	4500	id=dm3_chr3R_17967296_17969597_+	length_sum=6158626	last_pos=1995	ref_pos=1000</font>
</blockquote><br><hr size=3>
<blockquote class='timewarn'>
<font color='#00BB00'><b>TimeWarn: </b>2012_03_11.083302		Reading sequence	5000	id=dm3_chr4_1202358_1203074_+	length_sum=6853194	last_pos=711	ref_pos=358</font>
</blockquote><br><hr size=3>
<blockquote class='timewarn'>
<font color='#00BB00'><b>TimeWarn: </b>2012_03_11.083315		Reading sequence	5500	id=dm3_chrX_9049297_9050256_+	length_sum=7486953	last_pos=954	ref_pos=480</font>
</blockquote><br><hr size=3>
<blockquote class='timewarn'>
<font color='#00BB00'><b>TimeWarn: </b>2012_03_11.083327		Reading sequence	6000	id=dm3_chrX_22386213_22387188_+	length_sum=8083646	last_pos=970	ref_pos=488</font>
</blockquote><br><hr size=3>
<blockquote class='timewarn'>
<font color='#00BB00'><b>TimeWarn: </b>2012_03_11.083327	Calculating stats on sequence lengths</font>
</blockquote><br><hr size=3>
<blockquote class='timewarn'>
<font color='#00BB00'><b>TimeWarn: </b>2012_03_11.083327	Finished reading sequences. Number of patterns	6751</font>
</blockquote><br><hr size=3>
<blockquote class='timewarn'>
<font color='#00BB00'><b>TimeWarn: </b>2012_03_11.083327	Checking DNA</font>
</blockquote><br><hr size=3>
<blockquote class='timewarn'>
<font color='#00BB00'><b>TimeWarn: </b>2012_03_11.083327	Calculating classes</font>
</blockquote><br><hr size=3>
<blockquote class='timewarn'>
<font color='#00BB00'><b>TimeWarn: </b>2012_03_11.083327	Calculating sums of occurrences</font>
</blockquote><br><hr size=3>
<blockquote class='timewarn'>
<font color='#00BB00'><b>TimeWarn: </b>2012_03_11.083327	Summing occurrences of reverse complementary patterns</font>
</blockquote><br><hr size=3>
<blockquote class='timewarn'>
<font color='#00BB00'><b>TimeWarn: </b>2012_03_11.083331	Grouping patterns by pairs of reverse complements</font>
</blockquote><br><hr size=3>
<blockquote class='information'>
<font color='#00BB00'><b>Information: </b>Number of patterns before filtering	2080</font>
</blockquote><br><hr size=3>
<blockquote class='information'>
<font color='#00BB00'><b>Information: </b>Filtered by occurrences	2080	remaining patterns</font>
</blockquote><br><hr size=3>
<blockquote class='timewarn'>
<font color='#00BB00'><b>TimeWarn: </b>2012_03_11.083331	Calculating expected occurrences</font>
</blockquote><br><hr size=3>
<blockquote class='timewarn'>
<font color='#00BB00'><b>TimeWarn: </b>2012_03_11.083331	Calculating chi values</font>
</blockquote><br><hr size=3>
<blockquote class='information'>
<font color='#00BB00'><b>Information: </b>Chi and sig computed	289	remaining patterns</font>
</blockquote><br><hr size=3>
<blockquote class='timewarn'>
<font color='#00BB00'><b>TimeWarn: </b>2012_03_11.083332	Printing results	289	patterns</font>
</blockquote><br><hr size=3>
<blockquote class='timewarn'>
<font color='#00BB00'><b>TimeWarn: </b>2012_03_11.083332	Sorting results</font>
</blockquote><br><hr size=3>
<blockquote class='timewarn'>
<font color='#00BB00'><b>TimeWarn: </b>2012_03_11.083332	Sorted	289	patterns</font>
</blockquote><br><hr size=3>
<blockquote class='timewarn'>
<font color='#00BB00'><b>TimeWarn: </b>2012_03_11.083332	Retained	50	top-raking patterns</font>
</blockquote><br><hr size=3>
<blockquote class='timewarn'>
<font color='#00BB00'><b>TimeWarn: </b>2012_03_11.083332	Printing results</font>
</blockquote><br><hr size=3>
;2012_03_11.083332	generating the graphs ... 
<blockquote class='information'>
<font color='#00BB00'><b>Information: </b>Index file	/home/rsat/rsa-tools/public_html/tmp/peak-motifs.2012_03_11.082424/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50_graph_index.html</font>
</blockquote><br><hr size=3>
<blockquote class='warning'>
<font color='#FFAA00'><b>Warning: </b>Exported 21 graphs</font>
</blockquote><br><hr size=3>

real	2m56.202s
user	2m55.647s
sys	0m0.324s
