Supplementary material for Analyzing biological data using R: methods
for graphs and networks, IN Bacterial Molecular Networks. Series:
Methods in Molecular Biology. Editors: Jacques van Helden, Ariane
Toussaint, Denis Thieffry

Authors:
Nolwenn Le Meur , Robert Gentleman
email:nlemeur@irisa.fr; rgentlem@fhcrc.org 
 

Files:
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-NLeMeur_MiMB_MBN_2009_method.Rnw
R Noweb file where test and R code are encapsulated

-NLeMeur_MiMB_MBN_2009_method.bib
Bibtex reference file

-NLeMeur_MiMB_MBN_2009_method.tex
Latex file of the manuscript

Repositories:
-----------------
-- common
contains style file for latex formating

-- data
contains:
- bES.rda expression data

- BuildDataset
  bacsu_small.xml  xml file of ppi interaction
  To build the bES.rda
     makeData.R   R code 
     bacteria.csv.gz  annotation file
     nameMatch.csv.gz annotation file 
     gds680-pData.txt phenodata file 
     gene-links.dat   ecoli genename and ecoli id reference file
  

- Rcode repository that contains the NLeMeur_MiMB_MBN_2009_method.R file, R script extracted from the Noweb file

--figure
figure created for the book chapter

--table
table created for the book chapter