$prediction
              CTL         PHO pred.class grouping
YAL038W 0.9872845 0.012715450        CTL      PHO
YAR071W 0.8439788 0.156021169        CTL      CTL
YBL005W 0.9545187 0.045481324        CTL      CTL
YBL030C 0.9293598 0.070640177        CTL      CTL
YBR006W 0.9313233 0.068676666        CTL      CTL
YBR018C 0.9424358 0.057564242        CTL      CTL
YBR020W 0.9599945 0.040005539        CTL      CTL
YBR093C 0.7811811 0.218818924        CTL      CTL
YBR115C 0.8978306 0.102169359        CTL      CTL
YBR184W 0.8450878 0.154912153        CTL      CTL
YBR213W 0.9445397 0.055460321        CTL      CTL
YBR296C 0.8384801 0.161519888        CTL      CTL
YCL018W 0.9669452 0.033054800        CTL      CTL
YDL131W 0.9446890 0.055310960        CTL      CTL
YDL182W 0.9370681 0.062931860        CTL      CTL
YDL205C 0.9917401 0.008259865        CTL      PHO
YDL210W 0.9526803 0.047319693        CTL      CTL
YDR011W 0.9616790 0.038320976        CTL      CTL
YDR044W 0.9293170 0.070682997        CTL      CTL
YDR234W 0.9470098 0.052990191        CTL      CTL
YDR285W 0.9552639 0.044736135        CTL      CTL
YDR406W 0.9232837 0.076716263        CTL      CTL
YDR481C 0.8986847 0.101315298        CTL      CTL
YDR502C 0.8799237 0.120076267        CTL      CTL
YEL021W 0.9660655 0.033934510        CTL      CTL
YEL039C 0.9647907 0.035209297        CTL      CTL
YER026C 0.9446525 0.055347519        CTL      CTL
YER086W 0.9338613 0.066138743        CTL      CTL
YER091C 0.6734347 0.326565276        CTL      CTL
YER179W 0.9382593 0.061740710        CTL      CTL
YFR030W 0.8456604 0.154339638        CTL      CTL
YGL009C 0.9630473 0.036952724        CTL      CTL
YGL073W 0.9562426 0.043757379        CTL      CTL
YGL213C 0.9465197 0.053480269        CTL      CTL
YGR019W 0.9586336 0.041366435        CTL      CTL
YGR044C 0.9481079 0.051892099        CTL      CTL
YGR088W 0.9089561 0.091043852        CTL      CTL
YGR121C 0.9483305 0.051669461        CTL      CTL
YGR157W 0.9422437 0.057756331        CTL      CTL
YGR233C 0.7958905 0.204109549        CTL      CTL
YGR281W 0.9494336 0.050566357        CTL      PHO
YHL022C 0.9662012 0.033798823        CTL      CTL
YHL036W 0.8841444 0.115855579        CTL      CTL
YHR007C 0.9777655 0.022234463        CTL      CTL
YHR008C 0.9551101 0.044889922        CTL      CTL
YHR014W 0.9539533 0.046046679        CTL      CTL
YHR037W 0.9366638 0.063336227        CTL      CTL
YHR136C 0.5823569 0.417643054        CTL      CTL
YHR153C 0.9374321 0.062567882        CTL      CTL
YIL015W 0.9587561 0.041243883        CTL      CTL
YIL046W 0.6675184 0.332481627        CTL      CTL
YIL072W 0.9415150 0.058485010        CTL      CTL
YIR017C 0.9674580 0.032542010        CTL      PHO
YIR034C 0.9191958 0.080804154        CTL      CTL
YJL106W 0.9436577 0.056342272        CTL      CTL
YJL117W 0.8881646 0.111835404        CTL      CTL
YJL153C 0.9202555 0.079744538        CTL      CTL
YJL219W 0.9497279 0.050272093        CTL      CTL
YJR010W 0.7660331 0.233966863        CTL      CTL
YJR048W 0.9236278 0.076372190        CTL      CTL
YJR073C 0.8415553 0.158444656        CTL      CTL
YJR094C 0.9506055 0.049394483        CTL      CTL
YJR137C 0.5876185 0.412381466        CTL      CTL
YJR152W 0.9249273 0.075072750        CTL      CTL
YKL001C 0.9831236 0.016876363        CTL      PHO
YKL182W 0.9476889 0.052311127        CTL      CTL
YKL216W 0.9554107 0.044589276        CTL      CTL
YKR039W 0.9464155 0.053584460        CTL      CTL
YKR069W 0.8706139 0.129386132        CTL      CTL
YLR081W 0.8704357 0.129564320        CTL      CTL
YLR142W 0.8513729 0.148627078        CTL      CTL
YLR180W 0.9650456 0.034954386        CTL      CTL
YLR263W 0.9454732 0.054526767        CTL      CTL
YLR303W 0.6775891 0.322410934        CTL      CTL
YLR329W 0.9865749 0.013425131        CTL      PHO
YLR420W 0.9621982 0.037801849        CTL      CTL
YLR438W 0.9524161 0.047583909        CTL      CTL
YML051W 0.9353141 0.064685906        CTL      CTL
YML054C 0.9063555 0.093644527        CTL      CTL
YML075C 0.9407004 0.059299624        CTL      CTL
YML123C 0.8886242 0.111375771        CTL      CTL
YMR108W 0.9856035 0.014396541        CTL      CTL
YMR133W 0.9250596 0.074940430        CTL      CTL
YNL052W 0.9488621 0.051137863        CTL      CTL
YNL104C 0.7807681 0.219231910        CTL      CTL
YNL142W 0.9106336 0.089366386        CTL      CTL
YNL210W 0.9522477 0.047752306        CTL      CTL
YNL241C 0.9528998 0.047100234        CTL      CTL
YNL277W 0.9879132 0.012086826        CTL      PHO
YNR001C 0.9830015 0.016998459        CTL      CTL
YNR050C 0.9693408 0.030659234        CTL      PHO
YOL006C 0.9586026 0.041397386        CTL      CTL
YOR065W 0.8705237 0.129476265        CTL      CTL
YOR120W 0.9381655 0.061834534        CTL      CTL
YOR153W 0.9715703 0.028429740        CTL      CTL
YOR328W 0.8992442 0.100755760        CTL      CTL
YOR351C 0.9627655 0.037234515        CTL      CTL
YOR375C 0.9464888 0.053511212        CTL      CTL
YPL111W 0.9647411 0.035258943        CTL      CTL
YPL231W 0.9640539 0.035946088        CTL      CTL
YPR065W 0.9054859 0.094514068        CTL      CTL
YPR138C 0.9738918 0.026108231        CTL      CTL
YPR145W 0.9253965 0.074603468        CTL      CTL
YPR167C 0.9151085 0.084891546        CTL      CTL

$confusion
      true
object CTL PHO
   CTL  96   8
attr(,"error")
[1] 0
attr(,"mismatch")
[1] 0.07692308

