; oligo-analysis  -type dna -l 3 -return occ,freq -v -format wc -1str -sort -i /users/sista/sbrohee/no_backup/rsa-tools/data/genomes/Candida_albicans/genome/Candida_albicans_start_codons.wc -o /users/sista/sbrohee/no_backup/rsa-tools/data/genomes/Candida_albicans/genome/Candida_albicans_start_codon_frequencies
; Citation: van Helden et al. (1998). J Mol Biol 281(5), 827-42. 
; Program version              	1.136
; Oligomer length              	3
; Input file                   	/users/sista/sbrohee/no_backup/rsa-tools/data/genomes/Candida_albicans/genome/Candida_albicans_start_codons.wc
; Input format                 	wc
; Output file                  	/users/sista/sbrohee/no_backup/rsa-tools/data/genomes/Candida_albicans/genome/Candida_albicans_start_codon_frequencies
; Count overlapping matches
; Counted on a single strand
; Background model             	bernoulli
; Method                       	
; Sequence type                	DNA
; Nb of sequences              	6206
; Sum of sequence lengths      	18618
; discarded residues           	0	 (other letters than ACGT)
; discarded occurrences        	0	 (contain discarded residues)
; nb possible positions        	6206
; total oligo occurrences      	6206
; alphabet size                	4
; nb possible oligomers        	64
; oligomers tested for significance	0
; Threshold values
;	Parameter      	Lower	Upper
;	occ_P          	none	1
;
; column headers
;	1	seq            	oligomer sequence
;	2	id             	oligomer identifier
;	3	observed_freq  	observed relative frequency
;	4	occ            	observed occurrences
#seq	id	observed_freq	occ
atg	atg	0.9980663873671	6194
tgt	tgt	0.0004834031582	3
agt	agt	0.0003222687722	2
aat	aat	0.0001611343861	1
gat	gat	0.0001611343861	1
tca	tca	0.0001611343861	1
tga	tga	0.0001611343861	1
gtt	gtt	0.0001611343861	1
aac	aac	0.0001611343861	1
ctc	ctc	0.0001611343861	1
; Job started 2009_05_29.131935
; Job done    2009_05_29.131935
