******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 3.5.4 (Release date: ) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.nbcr.net. This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme.nbcr.net. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= ../data/oreganno_data/processed_data/regulons_for_one_factor/hb_factor_binding_sites_sequences.fa ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ hb_chr3R_12599053_125990 1.0000 15 hb_chr3R_12590382_125904 1.0000 22 hb_chr3R_4524457_4524472 1.0000 16 hb_chr3L_8638532_8638542 1.0000 11 hb_chr3R_12590893_125909 1.0000 19 hb_chr3R_12527040_125270 1.0000 25 hb_chr2R_5487763_5487771 1.0000 9 hb_chr3L_8638773_8638783 1.0000 11 hb_chr3R_12590862_125908 1.0000 23 hb_chr3R_12590429_125904 1.0000 22 hb_chr2R_5487659_5487669 1.0000 11 hb_chr2R_20730424_207304 1.0000 20 hb_chr3R_4520497_4520512 1.0000 16 hb_chr3R_12526648_125266 1.0000 18 hb_chr2R_5487487_5487495 1.0000 9 hb_chr3L_20631266_206312 1.0000 16 hb_chr3L_8640960_8640979 1.0000 20 hb_chr3R_12636603_126366 1.0000 13 hb_chr3R_12590698_125907 1.0000 25 hb_chr3L_8639229_8639238 1.0000 10 hb_chr3L_8639011_8639021 1.0000 11 hb_chr3R_12590460_125904 1.0000 22 hb_chr3L_8641247_8641261 1.0000 15 hb_chr3R_12526870_125269 1.0000 33 hb_chr2R_5487610_5487618 1.0000 9 hb_chr3L_8641169_8641178 1.0000 10 hb_chr3R_12589644_125896 1.0000 21 hb_chr3L_8638597_8638607 1.0000 11 hb_chr2R_5487589_5487598 1.0000 10 hb_chr3R_12590075_125901 1.0000 30 hb_chr3R_4520981_4520996 1.0000 16 hb_chr3R_12637018_126370 1.0000 19 hb_chr3L_8638510_8638520 1.0000 11 hb_chr2L_11456122_114561 1.0000 15 hb_chr3L_8639057_8639066 1.0000 10 hb_chr2R_5487627_5487636 1.0000 10 hb_chr3L_20630377_206303 1.0000 14 hb_chr3R_12636860_126368 1.0000 18 hb_chr3L_20630962_206309 1.0000 8 hb_chr3L_8640993_8641034 1.0000 42 hb_chr3L_20630484_206305 1.0000 24 hb_chr3R_12599303_125993 1.0000 34 hb_chr3L_8638365_8638375 1.0000 11 hb_chr3L_20631099_206311 1.0000 10 hb_chr2R_5490020_5490029 1.0000 10 hb_chr3R_4524061_4524076 1.0000 16 hb_chr3L_8638935_8638945 1.0000 11 hb_chr3R_12590484_125905 1.0000 19 hb_chr3L_8638470_8638480 1.0000 11 hb_chr3L_8639903_8639912 1.0000 10 hb_chr3L_8639082_8639091 1.0000 10 hb_chr3R_12636915_126369 1.0000 18 hb_chr2R_20730829_207308 1.0000 48 hb_chr3L_20631436_206314 1.0000 13 hb_chr3L_8639755_8639764 1.0000 10 hb_chr3R_12589580_125895 1.0000 16 hb_chr3R_12589995_125900 1.0000 18 hb_chr3L_8641225_8641239 1.0000 15 hb_chr2R_5487438_5487447 1.0000 10 hb_chr3L_8639709_8639718 1.0000 10 hb_chr2R_20730468_207304 1.0000 13 hb_chr2R_20730613_207306 1.0000 19 hb_chr3R_4522755_4522770 1.0000 16 hb_chr2R_5487811_5487820 1.0000 10 hb_chr3L_8640847_8640865 1.0000 19 hb_chr3R_12590594_125906 1.0000 49 hb_chr3L_8638728_8638755 1.0000 28 hb_chr3R_12589546_125895 1.0000 18 hb_chr3L_20630441_206304 1.0000 26 hb_chr3R_12590784_125908 1.0000 25 hb_chr3L_20630794_206308 1.0000 9 hb_chr3R_12599167_125991 1.0000 18 hb_chr2R_5490102_5490111 1.0000 10 hb_chr3R_12590251_125902 1.0000 28 hb_chr3R_12527001_125270 1.0000 23 hb_chr3R_4524373_4524388 1.0000 16 hb_chr2R_5487383_5487392 1.0000 10 hb_chr3L_20630773_206307 1.0000 8 hb_chr3L_8639248_8639257 1.0000 10 hb_chr3L_20631140_206311 1.0000 11 hb_chr3R_12590519_125905 1.0000 19 hb_chr3L_20630931_206309 1.0000 8 hb_chr3R_12636643_126366 1.0000 9 hb_chr3R_12590281_125903 1.0000 24 hb_chr2R_20730351_207304 1.0000 54 hb_chr3R_12599101_125991 1.0000 16 hb_chr3L_8639038_8639048 1.0000 11 hb_chr2R_20730588_207306 1.0000 13 hb_chr2R_7044714_7044724 1.0000 11 hb_chr3R_4524272_4524287 1.0000 16 hb_chr2R_5487363_5487372 1.0000 10 hb_chr3L_8639879_8639888 1.0000 10 hb_chr3R_12599383_125993 1.0000 16 hb_chr3R_4523967_4523982 1.0000 16 hb_chr3L_8641127_8641135 1.0000 9 hb_chr2R_7044665_7044674 1.0000 10 hb_chr3L_8639105_8639115 1.0000 11 hb_chr3L_8638435_8638444 1.0000 10 hb_chr2R_5487401_5487410 1.0000 10 hb_chr2R_5490185_5490194 1.0000 10 hb_chr3L_8638880_8638906 1.0000 27 hb_chr3L_8640809_8640825 1.0000 17 hb_chr3R_12599130_125991 1.0000 13 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme ../data/oreganno_data/processed_data/regulons_for_one_factor/hb_factor_binding_sites_sequences.fa -dna -mod zoops -nmotifs 1 -revcomp -minw 6 -maxw 25 -dir /Users/jturatsi model: mod= zoops nmotifs= 1 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 25 minic= 0.00 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 103 wnsites= 0.8 theta: prob= 1 spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 1706 N= 103 strands: + - sample: seed= 0 seqfrac= 1 Letter frequencies in dataset: A 0.366 C 0.134 G 0.134 T 0.366 Background letter frequencies (from dataset with add-one prior applied): A 0.366 C 0.134 G 0.134 T 0.366 ******************************************************************************** ******************************************************************************** MOTIF 1 width = 8 sites = 103 llr = 521 E-value = 8.6e-089 ******************************************************************************** -------------------------------------------------------------------------------- Motif 1 Description -------------------------------------------------------------------------------- Simplified A :::::52: pos.-specific C ::::::12 probability G :::::215 matrix T a9aaa253 bits 2.9 2.6 2.3 2.0 Information 1.7 content 1.4 ** (7.3 bits) 1.2 * *** 0.9 ***** * 0.6 ***** * 0.3 ****** * 0.0 -------- Multilevel TTTTTATG consensus TAT sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------- hb_chr3L_8639105_8639115 + 3 4.31e-05 AA TTTTTGTG G hb_chr3L_8639879_8639888 - 1 4.31e-05 GT TTTTTGTG hb_chr2R_5487383_5487392 + 2 4.31e-05 A TTTTTGTG C hb_chr3L_8639057_8639066 + 3 4.31e-05 CT TTTTTGTG hb_chr3L_8638880_8638906 + 19 1.61e-04 TTCTAATTAT TTTTTATG A hb_chr3R_12599101_125991 - 4 1.61e-04 CACAT TTTTTATG GCG hb_chr2R_20730351_207304 - 6 1.61e-04 AGCAAATTGC TTTTTATG ATCAT hb_chr3L_20630441_206304 + 10 1.61e-04 ACTTAACTC TTTTTATG AATATTTAT hb_chr3L_8641225_8641239 + 8 1.61e-04 ATGCGAT TTTTTATG hb_chr3L_8638470_8638480 - 2 1.61e-04 CC TTTTTATG T hb_chr2R_5490020_5490029 - 1 1.61e-04 TG TTTTTATG hb_chr3R_12636860_126368 + 8 1.61e-04 CGGCAAT TTTTTATG GTT hb_chr3L_8638510_8638520 + 3 1.61e-04 TG TTTTTATG A hb_chr3R_12637018_126370 + 10 1.61e-04 CCGCTGCAT TTTTTATG AG hb_chr3R_12526870_125269 + 6 1.61e-04 TGTAC TTTTTATG ACCTCGTAAA hb_chr2R_5487487_5487495 + 1 1.61e-04 . TTTTTATG G hb_chr3R_12526648_125266 - 3 1.61e-04 TTGGCAGT TTTTTATG GG hb_chr3R_12527040_125270 - 5 1.61e-04 AGGGAACCGT TTTTTATG TGTG hb_chr3R_12590382_125904 - 6 1.61e-04 GACCAAGTT TTTTTATG AGTGC hb_chr3L_8638435_8638444 + 2 1.77e-04 A TTTTTGCG T hb_chr3R_12636643_126366 + 2 1.77e-04 T TTTTTGCG hb_chr3L_8640809_8640825 + 7 2.20e-04 CGCAGT TTTTTACG ATC hb_chr3R_12590251_125902 - 9 2.20e-04 ATAAAAATAT TTTTTACG GCCCTTTT hb_chr3R_12589546_125895 + 7 2.20e-04 ACGCTC TTTTTACG CTGC hb_chr2R_5487811_5487820 + 2 2.20e-04 G TTTTTACG A hb_chr3L_8639709_8639718 - 1 2.36e-04 AC TTTTTGGG hb_chr3R_4524061_4524076 + 6 2.36e-04 ATTGT TTTTTGGG CAA hb_chr3L_8639248_8639257 + 3 4.39e-04 TT TTTTTTTG hb_chr3R_12589995_125900 + 5 4.39e-04 TCTC TTTTTGAG TTATCG hb_chr3L_8640993_8641034 + 24 4.39e-04 AATGTTTTTT TTTTTTTG TTTTTTTTAG hb_chr3L_20631266_206312 - 5 4.39e-04 GAGT TTTTTAGG CCAA hb_chr3R_12599130_125991 - 3 5.57e-04 GAA TTTTTAAG CG hb_chr3R_12599383_125993 + 7 5.57e-04 AAATCA TTTTTAAG GG hb_chr3R_4524272_4524287 + 6 5.57e-04 CCACC TTTTTAAG CTA hb_chr3L_8640847_8640865 + 8 5.57e-04 CGTCCGT TTTTTAAG CCTT hb_chr3L_20631436_206314 + 4 5.57e-04 AAT TTTTTAAG CG hb_chr2R_20730829_207308 - 4 5.57e-04 TTTTTTGTTG TTTTTAAG AGA hb_chr3R_12590698_125907 + 10 5.57e-04 CCTGCAAGT TTTTTAAG AAATTTTC hb_chr2R_5487763_5487771 + 1 5.57e-04 . TTTTTAAG A hb_chr3L_8638728_8638755 - 2 6.00e-04 TTGTTCATCT TTTTTGTC A hb_chr3L_8641247_8641261 - 1 6.00e-04 AAACCCT TTTTTGTC hb_chr3R_12590594_125906 + 7 7.18e-04 GTTCTT TTTTTATC TTAATCTTTT hb_chr3R_12590484_125905 + 1 7.18e-04 . TTTTTATC TTGGGTTGCA hb_chr2R_20730588_207306 + 5 7.61e-04 CGCG TTTTTTCG C hb_chr2R_5487610_5487618 + 1 7.61e-04 . TTTTTTCG C hb_chr3R_12599303_125993 - 22 7.77e-04 ATAAT TTTTTGCC ATGGCTAATA hb_chr3R_4523967_4523982 + 5 8.63e-04 GCCG TTTTTTGG CATC hb_chr3R_12599053_125990 - 5 8.63e-04 GGT TTTTTACC AACA hb_chr2R_5487363_5487372 + 2 1.14e-03 T TTTTTGTT T hb_chr3L_8639755_8639764 - 1 1.14e-03 GT TTTTTCTG hb_chr2R_5487589_5487598 + 2 1.14e-03 T TTTTTGTT C hb_chr3R_12590460_125904 + 7 1.14e-03 AACAAG TTTTTGTT GAAAAAGA hb_chr3R_4520497_4520512 - 4 1.14e-03 ATAAT TTTTTGTT TCT hb_chr3R_4524457_4524472 - 4 1.14e-03 TTTTT TTTTTTAG TCC hb_chr3L_8639038_8639048 + 4 1.48e-03 TTC TTTTTGGC hb_chr3L_20631140_206311 - 2 1.48e-03 TT TTTTTATT A hb_chr3R_12636915_126369 - 6 1.48e-03 TCCCT TTTTTATT TTGTC hb_chr3L_8639903_8639912 - 1 1.48e-03 CT TTTTTATT hb_chr3L_8639011_8639021 + 3 1.48e-03 AT TTTTTATT T hb_chr3L_8639229_8639238 + 3 1.48e-03 CT TTTTTATT hb_chr3R_4524373_4524388 + 5 1.68e-03 CCAA TTTTTTTC CCAA hb_chr2R_20730613_207306 + 8 1.68e-03 ATTGTTT TTTTTTTC AGTT hb_chr3L_8639082_8639091 + 3 1.68e-03 AA TTTTTAGC hb_chr3L_8638365_8638375 - 4 1.68e-03 . TTTTTTTC TTC hb_chr2R_5487627_5487636 + 1 1.68e-03 . TTTTTTTC CC hb_chr3L_8638597_8638607 + 3 1.68e-03 CA TTTTTAGC G hb_chr3L_8640960_8640979 + 7 1.68e-03 ATAAAG TTTTTGAC CAGATT hb_chr3L_8638532_8638542 + 3 1.68e-03 AT TTTTTTTC C hb_chr3L_8638935_8638945 + 3 1.89e-03 CT TCTTTGTG G hb_chr3L_20630773_206307 - 1 2.14e-03 . TTTTTTCC hb_chr3R_12590281_125903 + 11 2.87e-03 CTTTAAGTGA TTTTTAGT GGCCTT hb_chr2R_20730468_207304 + 3 2.87e-03 AT TTTTTCAG ACA hb_chr2L_11456122_114561 + 7 2.87e-03 AAGCCG TTTTTCAG G hb_chr3R_12590075_125901 + 13 2.87e-03 TCGCACTGGG GTTTTATG GCTCATTTTC hb_chr3L_8638773_8638783 + 3 2.87e-03 GA TTTTTAGT G hb_chr2R_5487401_5487410 + 2 3.26e-03 C TCTTTACG G hb_chr3R_12527001_125270 + 9 3.26e-03 GGAACGAT TTTTTAAT GTTTCTC hb_chr3R_12599167_125991 - 4 3.26e-03 GGCACCT TTTTTAAT GGC hb_chr3L_20631099_206311 + 3 3.26e-03 AG TTTTTTGC hb_chr2R_5487659_5487669 + 2 3.26e-03 T TTTTTAAT TC hb_chr3L_20630794_206308 - 2 3.42e-03 . TTTTTTAC A hb_chr3R_4520981_4520996 - 4 3.47e-03 TTCCC GTTTTGCG TTT hb_chr3L_20630484_206305 - 1 3.84e-03 GCTCCTTCTT TCTTTTTG hb_chr3R_12590893_125909 - 1 4.14e-03 AAAAGAATTA TGTTTGTC hb_chr3L_20630962_206309 - 1 4.43e-03 . GTTTTTTG hb_chr3L_20630931_206309 - 1 4.98e-03 . TTTTTTAT hb_chr2R_20730424_207304 - 7 4.98e-03 TTACAC TTTTTCTT TTCTGA hb_chr2R_7044665_7044674 - 2 5.75e-03 T TTTTCAAG G hb_chr2R_5487438_5487447 + 2 5.75e-03 T TCTTTGTT C hb_chr3R_12589580_125895 - 1 6.28e-03 CTAACTCG TATTTTTG hb_chr3R_12590862_125908 - 1 6.28e-03 ATAAATAAAC TATTTTTG hb_chr3R_12590784_125908 - 10 6.79e-03 ATTTATGG TGTTTTTC AATATGCCG hb_chr3L_8641127_8641135 - 2 9.67e-03 . TGTTTTTT A hb_chr3R_12636603_126366 + 3 9.67e-03 GT TTCTTATT TTT hb_chr3R_4522755_4522770 - 4 1.06e-02 ATAGT TGTTTAAT TAT hb_chr2R_7044714_7044724 + 2 1.14e-02 T TATTTATT TG hb_chr3R_12589644_125896 + 3 1.27e-02 AA TTTTCACT GGGCAATTAA hb_chr3R_12590519_125905 + 7 1.40e-02 CTGATA TTTTTAAA AGTCA hb_chr2R_5490102_5490111 + 2 1.70e-02 T TATTTTTT T hb_chr3L_8641169_8641178 - 1 2.13e-02 TC TTCTTTAT hb_chr3R_12590429_125904 + 2 2.47e-02 G TTTTAAAT ATTAATTTAG hb_chr2R_5490185_5490194 + 3 2.87e-02 CG ATTTTTTT hb_chr3L_20630377_206303 + 4 5.52e-02 CCC TTTTAAAA GTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- hb_chr3L_8639105_8639115 4.3e-05 2_[+1]_1 hb_chr3L_8639879_8639888 4.3e-05 [-1]_2 hb_chr2R_5487383_5487392 4.3e-05 1_[+1]_1 hb_chr3L_8639057_8639066 4.3e-05 2_[+1] hb_chr3L_8638880_8638906 0.00016 18_[+1]_1 hb_chr3R_12599101_125991 0.00016 3_[-1]_5 hb_chr2R_20730351_207304 0.00016 5_[-1]_41 hb_chr3L_20630441_206304 0.00016 9_[+1]_9 hb_chr3L_8641225_8641239 0.00016 7_[+1] hb_chr3L_8638470_8638480 0.00016 1_[-1]_2 hb_chr2R_5490020_5490029 0.00016 [-1]_2 hb_chr3R_12636860_126368 0.00016 7_[+1]_3 hb_chr3L_8638510_8638520 0.00016 2_[+1]_1 hb_chr3R_12637018_126370 0.00016 9_[+1]_2 hb_chr3R_12526870_125269 0.00016 5_[+1]_20 hb_chr2R_5487487_5487495 0.00016 [+1]_1 hb_chr3R_12526648_125266 0.00016 2_[-1]_8 hb_chr3R_12527040_125270 0.00016 4_[-1]_13 hb_chr3R_12590382_125904 0.00016 5_[-1]_9 hb_chr3L_8638435_8638444 0.00018 1_[+1]_1 hb_chr3R_12636643_126366 0.00018 1_[+1] hb_chr3L_8640809_8640825 0.00022 6_[+1]_3 hb_chr3R_12590251_125902 0.00022 8_[-1]_12 hb_chr3R_12589546_125895 0.00022 6_[+1]_4 hb_chr2R_5487811_5487820 0.00022 1_[+1]_1 hb_chr3L_8639709_8639718 0.00024 [-1]_2 hb_chr3R_4524061_4524076 0.00024 5_[+1]_3 hb_chr3L_8639248_8639257 0.00044 2_[+1] hb_chr3R_12589995_125900 0.00044 4_[+1]_6 hb_chr3L_8640993_8641034 0.00044 23_[+1]_11 hb_chr3L_20631266_206312 0.00044 4_[-1]_4 hb_chr3R_12599130_125991 0.00056 2_[-1]_3 hb_chr3R_12599383_125993 0.00056 6_[+1]_2 hb_chr3R_4524272_4524287 0.00056 5_[+1]_3 hb_chr3L_8640847_8640865 0.00056 7_[+1]_4 hb_chr3L_20631436_206314 0.00056 3_[+1]_2 hb_chr2R_20730829_207308 0.00056 3_[-1]_37 hb_chr3R_12590698_125907 0.00056 9_[+1]_8 hb_chr2R_5487763_5487771 0.00056 [+1]_1 hb_chr3L_8638728_8638755 0.0006 1_[-1]_19 hb_chr3L_8641247_8641261 0.0006 [-1]_7 hb_chr3R_12590594_125906 0.00072 6_[+1]_35 hb_chr3R_12590484_125905 0.00072 [+1]_11 hb_chr2R_20730588_207306 0.00076 4_[+1]_1 hb_chr2R_5487610_5487618 0.00076 [+1]_1 hb_chr3R_12599303_125993 0.00078 21_[-1]_5 hb_chr3R_4523967_4523982 0.00086 4_[+1]_4 hb_chr3R_12599053_125990 0.00086 4_[-1]_3 hb_chr2R_5487363_5487372 0.0011 1_[+1]_1 hb_chr3L_8639755_8639764 0.0011 [-1]_2 hb_chr2R_5487589_5487598 0.0011 1_[+1]_1 hb_chr3R_12590460_125904 0.0011 6_[+1]_8 hb_chr3R_4520497_4520512 0.0011 3_[-1]_5 hb_chr3R_4524457_4524472 0.0011 3_[-1]_5 hb_chr3L_8639038_8639048 0.0015 3_[+1] hb_chr3L_20631140_206311 0.0015 1_[-1]_2 hb_chr3R_12636915_126369 0.0015 5_[-1]_5 hb_chr3L_8639903_8639912 0.0015 [-1]_2 hb_chr3L_8639011_8639021 0.0015 2_[+1]_1 hb_chr3L_8639229_8639238 0.0015 2_[+1] hb_chr3R_4524373_4524388 0.0017 4_[+1]_4 hb_chr2R_20730613_207306 0.0017 7_[+1]_4 hb_chr3L_8639082_8639091 0.0017 2_[+1] hb_chr3L_8638365_8638375 0.0017 3_[-1] hb_chr2R_5487627_5487636 0.0017 [+1]_2 hb_chr3L_8638597_8638607 0.0017 2_[+1]_1 hb_chr3L_8640960_8640979 0.0017 6_[+1]_6 hb_chr3L_8638532_8638542 0.0017 2_[+1]_1 hb_chr3L_8638935_8638945 0.0019 2_[+1]_1 hb_chr3L_20630773_206307 0.0021 [-1] hb_chr3R_12590281_125903 0.0029 10_[+1]_6 hb_chr2R_20730468_207304 0.0029 2_[+1]_3 hb_chr2L_11456122_114561 0.0029 6_[+1]_1 hb_chr3R_12590075_125901 0.0029 12_[+1]_10 hb_chr3L_8638773_8638783 0.0029 2_[+1]_1 hb_chr2R_5487401_5487410 0.0033 1_[+1]_1 hb_chr3R_12527001_125270 0.0033 8_[+1]_7 hb_chr3R_12599167_125991 0.0033 3_[-1]_7 hb_chr3L_20631099_206311 0.0033 2_[+1] hb_chr2R_5487659_5487669 0.0033 1_[+1]_2 hb_chr3L_20630794_206308 0.0034 1_[-1] hb_chr3R_4520981_4520996 0.0035 3_[-1]_5 hb_chr3L_20630484_206305 0.0038 [-1]_16 hb_chr3R_12590893_125909 0.0041 [-1]_11 hb_chr3L_20630962_206309 0.0044 [-1] hb_chr3L_20630931_206309 0.005 [-1] hb_chr2R_20730424_207304 0.005 6_[-1]_6 hb_chr2R_7044665_7044674 0.0058 1_[-1]_1 hb_chr2R_5487438_5487447 0.0058 1_[+1]_1 hb_chr3R_12589580_125895 0.0063 [-1]_8 hb_chr3R_12590862_125908 0.0063 [-1]_15 hb_chr3R_12590784_125908 0.0068 9_[-1]_8 hb_chr3L_8641127_8641135 0.0097 1_[-1] hb_chr3R_12636603_126366 0.0097 2_[+1]_3 hb_chr3R_4522755_4522770 0.011 3_[-1]_5 hb_chr2R_7044714_7044724 0.011 1_[+1]_2 hb_chr3R_12589644_125896 0.013 2_[+1]_11 hb_chr3R_12590519_125905 0.014 6_[+1]_5 hb_chr2R_5490102_5490111 0.017 1_[+1]_1 hb_chr3L_8641169_8641178 0.021 [-1]_2 hb_chr3R_12590429_125904 0.025 1_[+1]_13 hb_chr2R_5490185_5490194 0.029 2_[+1] hb_chr3L_20630377_206303 0.055 3_[+1]_3 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 1 width=8 seqs=103 hb_chr3L_8639105_8639115 ( 3) TTTTTGTG 1 hb_chr3L_8639879_8639888 ( 1) TTTTTGTG 1 hb_chr2R_5487383_5487392 ( 2) TTTTTGTG 1 hb_chr3L_8639057_8639066 ( 3) TTTTTGTG 1 hb_chr3L_8638880_8638906 ( 19) TTTTTATG 1 hb_chr3R_12599101_125991 ( 4) TTTTTATG 1 hb_chr2R_20730351_207304 ( 6) TTTTTATG 1 hb_chr3L_20630441_206304 ( 10) TTTTTATG 1 hb_chr3L_8641225_8641239 ( 8) TTTTTATG 1 hb_chr3L_8638470_8638480 ( 2) TTTTTATG 1 hb_chr2R_5490020_5490029 ( 1) TTTTTATG 1 hb_chr3R_12636860_126368 ( 8) TTTTTATG 1 hb_chr3L_8638510_8638520 ( 3) TTTTTATG 1 hb_chr3R_12637018_126370 ( 10) TTTTTATG 1 hb_chr3R_12526870_125269 ( 6) TTTTTATG 1 hb_chr2R_5487487_5487495 ( 1) TTTTTATG 1 hb_chr3R_12526648_125266 ( 3) TTTTTATG 1 hb_chr3R_12527040_125270 ( 5) TTTTTATG 1 hb_chr3R_12590382_125904 ( 6) TTTTTATG 1 hb_chr3L_8638435_8638444 ( 2) TTTTTGCG 1 hb_chr3R_12636643_126366 ( 2) TTTTTGCG 1 hb_chr3L_8640809_8640825 ( 7) TTTTTACG 1 hb_chr3R_12590251_125902 ( 9) TTTTTACG 1 hb_chr3R_12589546_125895 ( 7) TTTTTACG 1 hb_chr2R_5487811_5487820 ( 2) TTTTTACG 1 hb_chr3L_8639709_8639718 ( 1) TTTTTGGG 1 hb_chr3R_4524061_4524076 ( 6) TTTTTGGG 1 hb_chr3L_8639248_8639257 ( 3) TTTTTTTG 1 hb_chr3R_12589995_125900 ( 5) TTTTTGAG 1 hb_chr3L_8640993_8641034 ( 24) TTTTTTTG 1 hb_chr3L_20631266_206312 ( 5) TTTTTAGG 1 hb_chr3R_12599130_125991 ( 3) TTTTTAAG 1 hb_chr3R_12599383_125993 ( 7) TTTTTAAG 1 hb_chr3R_4524272_4524287 ( 6) TTTTTAAG 1 hb_chr3L_8640847_8640865 ( 8) TTTTTAAG 1 hb_chr3L_20631436_206314 ( 4) TTTTTAAG 1 hb_chr2R_20730829_207308 ( 4) TTTTTAAG 1 hb_chr3R_12590698_125907 ( 10) TTTTTAAG 1 hb_chr2R_5487763_5487771 ( 1) TTTTTAAG 1 hb_chr3L_8638728_8638755 ( 2) TTTTTGTC 1 hb_chr3L_8641247_8641261 ( 1) TTTTTGTC 1 hb_chr3R_12590594_125906 ( 7) TTTTTATC 1 hb_chr3R_12590484_125905 ( 1) TTTTTATC 1 hb_chr2R_20730588_207306 ( 5) TTTTTTCG 1 hb_chr2R_5487610_5487618 ( 1) TTTTTTCG 1 hb_chr3R_12599303_125993 ( 22) TTTTTGCC 1 hb_chr3R_4523967_4523982 ( 5) TTTTTTGG 1 hb_chr3R_12599053_125990 ( 5) TTTTTACC 1 hb_chr2R_5487363_5487372 ( 2) TTTTTGTT 1 hb_chr3L_8639755_8639764 ( 1) TTTTTCTG 1 hb_chr2R_5487589_5487598 ( 2) TTTTTGTT 1 hb_chr3R_12590460_125904 ( 7) TTTTTGTT 1 hb_chr3R_4520497_4520512 ( 4) TTTTTGTT 1 hb_chr3R_4524457_4524472 ( 4) TTTTTTAG 1 hb_chr3L_8639038_8639048 ( 4) TTTTTGGC 1 hb_chr3L_20631140_206311 ( 2) TTTTTATT 1 hb_chr3R_12636915_126369 ( 6) TTTTTATT 1 hb_chr3L_8639903_8639912 ( 1) TTTTTATT 1 hb_chr3L_8639011_8639021 ( 3) TTTTTATT 1 hb_chr3L_8639229_8639238 ( 3) TTTTTATT 1 hb_chr3R_4524373_4524388 ( 5) TTTTTTTC 1 hb_chr2R_20730613_207306 ( 8) TTTTTTTC 1 hb_chr3L_8639082_8639091 ( 3) TTTTTAGC 1 hb_chr3L_8638365_8638375 ( 4) TTTTTTTC 1 hb_chr2R_5487627_5487636 ( 1) TTTTTTTC 1 hb_chr3L_8638597_8638607 ( 3) TTTTTAGC 1 hb_chr3L_8640960_8640979 ( 7) TTTTTGAC 1 hb_chr3L_8638532_8638542 ( 3) TTTTTTTC 1 hb_chr3L_8638935_8638945 ( 3) TCTTTGTG 1 hb_chr3L_20630773_206307 ( 1) TTTTTTCC 1 hb_chr3R_12590281_125903 ( 11) TTTTTAGT 1 hb_chr2R_20730468_207304 ( 3) TTTTTCAG 1 hb_chr2L_11456122_114561 ( 7) TTTTTCAG 1 hb_chr3R_12590075_125901 ( 13) GTTTTATG 1 hb_chr3L_8638773_8638783 ( 3) TTTTTAGT 1 hb_chr2R_5487401_5487410 ( 2) TCTTTACG 1 hb_chr3R_12527001_125270 ( 9) TTTTTAAT 1 hb_chr3R_12599167_125991 ( 4) TTTTTAAT 1 hb_chr3L_20631099_206311 ( 3) TTTTTTGC 1 hb_chr2R_5487659_5487669 ( 2) TTTTTAAT 1 hb_chr3L_20630794_206308 ( 2) TTTTTTAC 1 hb_chr3R_4520981_4520996 ( 4) GTTTTGCG 1 hb_chr3L_20630484_206305 ( 1) TCTTTTTG 1 hb_chr3R_12590893_125909 ( 1) TGTTTGTC 1 hb_chr3L_20630962_206309 ( 1) GTTTTTTG 1 hb_chr3L_20630931_206309 ( 1) TTTTTTAT 1 hb_chr2R_20730424_207304 ( 7) TTTTTCTT 1 hb_chr2R_7044665_7044674 ( 2) TTTTCAAG 1 hb_chr2R_5487438_5487447 ( 2) TCTTTGTT 1 hb_chr3R_12589580_125895 ( 1) TATTTTTG 1 hb_chr3R_12590862_125908 ( 1) TATTTTTG 1 hb_chr3R_12590784_125908 ( 10) TGTTTTTC 1 hb_chr3L_8641127_8641135 ( 2) TGTTTTTT 1 hb_chr3R_12636603_126366 ( 3) TTCTTATT 1 hb_chr3R_4522755_4522770 ( 4) TGTTTAAT 1 hb_chr2R_7044714_7044724 ( 2) TATTTATT 1 hb_chr3R_12589644_125896 ( 3) TTTTCACT 1 hb_chr3R_12590519_125905 ( 7) TTTTTAAA 1 hb_chr2R_5490102_5490111 ( 2) TATTTTTT 1 hb_chr3L_8641169_8641178 ( 1) TTCTTTAT 1 hb_chr3R_12590429_125904 ( 2) TTTTAAAT 1 hb_chr2R_5490185_5490194 ( 3) ATTTTTTT 1 hb_chr3L_20630377_206303 ( 4) TTTTAAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 985 bayes= 3.09813 E= 8.6e-089 -523 -1333 -220 139 -323 -179 -179 127 -1333 -279 -1333 142 -1333 -1333 -1333 145 -423 -279 -1333 139 49 -179 67 -65 -65 2 -47 55 -423 53 199 -54 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 103 E= 8.6e-089 0.009709 0.000000 0.029126 0.961165 0.038835 0.038835 0.038835 0.883495 0.000000 0.019417 0.000000 0.980583 0.000000 0.000000 0.000000 1.000000 0.019417 0.019417 0.000000 0.961165 0.514563 0.038835 0.213592 0.233010 0.233010 0.135922 0.097087 0.533981 0.019417 0.194175 0.533981 0.252427 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 regular expression -------------------------------------------------------------------------------- TTTTT[ATG][TA][GT] -------------------------------------------------------------------------------- Time 1.53 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- hb_chr3R_12599053_125990 1.37e-02 15 hb_chr3R_12590382_125904 4.81e-03 22 hb_chr3R_4524457_4524472 2.03e-02 16 hb_chr3L_8638532_8638542 1.34e-02 11 hb_chr3R_12590893_125909 9.48e-02 19 hb_chr3R_12527040_125270 5.77e-03 25 hb_chr2R_5487763_5487771 2.23e-03 9 hb_chr3L_8638773_8638783 2.27e-02 11 hb_chr3R_12590862_125908 1.83e-01 23 hb_chr3R_12590429_125904 5.28e-01 22 hb_chr2R_5487659_5487669 2.58e-02 11 hb_chr2R_20730424_207304 1.22e-01 20 hb_chr3R_4520497_4520512 2.03e-02 16 hb_chr3R_12526648_125266 3.53e-03 18 hb_chr2R_5487487_5487495 6.43e-04 9 hb_chr3L_20631266_206312 7.88e-03 16 hb_chr3L_8640960_8640979 4.28e-02 20 hb_chr3R_12636603_126366 1.10e-01 13 hb_chr3R_12590698_125907 1.99e-02 25 hb_chr3L_8639229_8639238 8.83e-03 10 hb_chr3L_8639011_8639021 1.18e-02 11 hb_chr3R_12590460_125904 3.37e-02 22 hb_chr3L_8641247_8641261 9.56e-03 15 hb_chr3R_12526870_125269 8.32e-03 33 hb_chr2R_5487610_5487618 3.04e-03 9 hb_chr3L_8641169_8641178 1.21e-01 10 hb_chr3R_12589644_125896 3.00e-01 21 hb_chr3L_8638597_8638607 1.34e-02 11 hb_chr2R_5487589_5487598 6.83e-03 10 hb_chr3R_12590075_125901 1.24e-01 30 hb_chr3R_4520981_4520996 6.07e-02 16 hb_chr3R_12637018_126370 3.85e-03 19 hb_chr3L_8638510_8638520 1.29e-03 11 hb_chr2L_11456122_114561 4.49e-02 15 hb_chr3L_8639057_8639066 2.59e-04 2_[+1(4.31e-05)] hb_chr2R_5487627_5487636 1.00e-02 10 hb_chr3L_20630377_206303 5.48e-01 14 hb_chr3R_12636860_126368 3.53e-03 18 hb_chr3L_20630962_206309 8.84e-03 8 hb_chr3L_8640993_8641034 3.03e-02 42 hb_chr3L_20630484_206305 1.23e-01 24 hb_chr3R_12599303_125993 4.11e-02 34 hb_chr3L_8638365_8638375 1.34e-02 11 hb_chr3L_20631099_206311 1.94e-02 10 hb_chr2R_5490020_5490029 9.64e-04 10 hb_chr3R_4524061_4524076 4.23e-03 16 hb_chr3L_8638935_8638945 1.50e-02 11 hb_chr3R_12590484_125905 1.71e-02 19 hb_chr3L_8638470_8638480 1.29e-03 11 hb_chr3L_8639903_8639912 8.83e-03 10 hb_chr3L_8639082_8639091 1.00e-02 10 hb_chr3R_12636915_126369 3.20e-02 18 hb_chr2R_20730829_207308 4.47e-02 48 hb_chr3L_20631436_206314 6.66e-03 13 hb_chr3L_8639755_8639764 6.83e-03 10 hb_chr3R_12589580_125895 1.07e-01 16 hb_chr3R_12589995_125900 9.62e-03 18 hb_chr3L_8641225_8641239 2.57e-03 15 hb_chr2R_5487438_5487447 3.40e-02 10 hb_chr3L_8639709_8639718 1.41e-03 10 hb_chr2R_20730468_207304 3.38e-02 13 hb_chr2R_20730613_207306 3.96e-02 19 hb_chr3R_4522755_4522770 1.75e-01 16 hb_chr2R_5487811_5487820 1.32e-03 10 hb_chr3L_8640847_8640865 1.33e-02 19 hb_chr3R_12590594_125906 5.85e-02 49 hb_chr3L_8638728_8638755 2.49e-02 28 hb_chr3R_12589546_125895 4.82e-03 18 hb_chr3L_20630441_206304 6.09e-03 26 hb_chr3R_12590784_125908 2.17e-01 25 hb_chr3L_20630794_206308 1.36e-02 9 hb_chr3R_12599167_125991 6.93e-02 18 hb_chr2R_5490102_5490111 9.79e-02 10 hb_chr3R_12590251_125902 9.19e-03 28 hb_chr3R_12527001_125270 9.92e-02 23 hb_chr3R_4524373_4524388 2.98e-02 16 hb_chr2R_5487383_5487392 2.59e-04 1_[+1(4.31e-05)]_1 hb_chr3L_20630773_206307 4.27e-03 8 hb_chr3L_8639248_8639257 2.63e-03 10 hb_chr3L_20631140_206311 1.18e-02 11 hb_chr3R_12590519_125905 2.86e-01 19 hb_chr3L_20630931_206309 9.93e-03 8 hb_chr3R_12636643_126366 7.06e-04 9 hb_chr3R_12590281_125903 9.30e-02 24 hb_chr2R_20730351_207304 1.50e-02 54 hb_chr3R_12599101_125991 2.89e-03 16 hb_chr3L_8639038_8639048 1.18e-02 11 hb_chr2R_20730588_207306 9.09e-03 13 hb_chr2R_7044714_7044724 8.78e-02 11 hb_chr3R_4524272_4524287 9.98e-03 16 hb_chr2R_5487363_5487372 6.83e-03 10 hb_chr3L_8639879_8639888 2.59e-04 [-1(4.31e-05)]_2 hb_chr3R_12599383_125993 9.98e-03 16 hb_chr3R_4523967_4523982 1.54e-02 16 hb_chr3L_8641127_8641135 3.81e-02 9 hb_chr2R_7044665_7044674 3.40e-02 10 hb_chr3L_8639105_8639115 3.45e-04 2_[+1(4.31e-05)]_1 hb_chr3L_8638435_8638444 1.06e-03 10 hb_chr2R_5487401_5487410 1.94e-02 10 hb_chr2R_5490185_5490194 1.60e-01 10 hb_chr3L_8638880_8638906 6.41e-03 27 hb_chr3L_8640809_8640825 4.39e-03 17 hb_chr3R_12599130_125991 6.66e-03 13 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because nmotifs = 1 reached. ******************************************************************************** CPU: jturatsi.scmbb.ulb.ac.be ********************************************************************************